BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469430.1|BJ469430 BJ469430 K. Sato unpublished cDNA li... 634 e-180
gb|BQ465731.1|BQ465731 HU04I10r HU Hordeum vulgare subsp. v... 626 e-178
gb|CV053954.1|CV053954 BNEL105a9 Barley EST endosperm libra... 626 e-178
gb|BE421433.1|BE421433 HWM009.C06 ITEC HWM Barley Leaf Libr... 597 e-169
gb|BQ470613.1|BQ470613 HX03H24r HX Hordeum vulgare subsp. v... 529 e-149
gb|BU987610.1|BU987610 HF15D24r HF Hordeum vulgare subsp. v... 511 e-143
gb|BF065146.3|BF065146 HV_CEb0023I04f Hordeum vulgare seedl... 507 e-142
gb|CV063249.1|CV063249 BNEL88c2 Barley EST endosperm librar... 494 e-138
gb|CV055842.1|CV055842 BNEL124a9 Barley EST endosperm libra... 492 e-137
gb|BQ663901.1|BQ663901 HU04I10u HU Hordeum vulgare subsp. v... 486 e-136
gb|BU980549.1|BU980549 HA20P21r HA Hordeum vulgare subsp. v... 478 e-133
gb|CA023781.1|CA023781 HZ47G06r HZ Hordeum vulgare subsp. v... 478 e-133
gb|BJ474727.1|BJ474727 BJ474727 K. Sato unpublished cDNA li... 458 e-127
gb|CV057001.1|CV057001 BNEL22h8 Barley EST endosperm librar... 440 e-122
gb|BU997980.1|BU997980 HI09J15r HI Hordeum vulgare subsp. v... 432 e-120
gb|BQ665412.1|BQ665412 HX03H24u HX Hordeum vulgare subsp. v... 426 e-118
gb|BG414736.2|BG414736 HVSMEk0003H20f Hordeum vulgare testa... 418 e-115
gb|BI779837.2|BI779837 EBem07_SQ001_C05_R embryo, 28 DPA, n... 418 e-115
gb|CA004164.1|CA004164 HS16M09r HS Hordeum vulgare subsp. v... 416 e-115
gb|BQ656875.1|BQ656875 HA01M01u HA Hordeum vulgare subsp. v... 355 2e-096
gb|BF628052.2|BF628052 HVSMEb0003A03f Hordeum vulgare seedl... 339 1e-091
gb|AV937146.1|AV937146 AV937146 K. Sato unpublished cDNA li... 329 1e-088
gb|CB859177.1|CB859177 HI09J15w HI Hordeum vulgare subsp. v... 325 2e-087
gb|BU967849.1|BU967849 HB05J05r BC Hordeum vulgare subsp. v... 266 1e-069
gb|BU999946.1|BU999946 HS16M09u HS Hordeum vulgare subsp. v... 266 1e-069
gb|CA028329.1|CA028329 HZ61K13r HZ Hordeum vulgare subsp. v... 266 1e-069
gb|AV918801.1|AV918801 AV918801 K. Sato unpublished cDNA li... 188 2e-046
gb|BQ662705.1|BQ662705 HS03L01u HS Hordeum vulgare subsp. v... 180 6e-044
gb|BQ469236.1|BQ469236 HM03M20r HM Hordeum vulgare subsp. v... 149 2e-034
gb|CV061944.1|CV061944 BNEL74f2 Barley EST endosperm librar... 125 3e-027
gb|BF627118.2|BF627118 HVSMEb0002O24f Hordeum vulgare seedl... 44 0.008
gb|BG300886.1|BG300886 HVSMEb0018M24f Hordeum vulgare seedl... 44 0.008
gb|BE215303.1|BE215303 HV_CEb0006G21f Hordeum vulgare seedl... 44 0.008
gb|AV915252.1|AV915252 AV915252 K. Sato unpublished cDNA li... 44 0.008
gb|AV921860.1|AV921860 AV921860 K. Sato unpublished cDNA li... 44 0.008
gb|BI947770.1|BI947770 HVSMEl0006N08f Hordeum vulgare spike... 40 0.13
gb|BQ764609.1|BQ764609 EBca01_SQ004_J10_R carpel, pre-anthe... 40 0.13
>gb|BJ469430.1|BJ469430 BJ469430 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20p12 5', mRNA sequence
Length = 631
Score = 634 bits (320), Expect = e-180
Identities = 523/590 (88%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 626 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 567
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 566 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 507
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || ||||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 506 cagtggagtcactctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 447
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 446 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 387
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 386 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 327
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 326 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 267
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct: 266 ctttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgt 207
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 cgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtga 147
Query: 753 ggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggt 809
|||||| |||| ||| | ||||| |||||||||||||||||||| || | ||| ||
Sbjct: 146 ggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagt 87
Query: 810 cgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 86 cccggttgcactccgtcagctccttctgcacgcgcgacacgtccaccatc 37
>gb|BQ465731.1|BQ465731 HU04I10r HU Hordeum vulgare subsp. vulgare cDNA clone HU04I10
5-PRIME, mRNA sequence
Length = 622
Score = 626 bits (316), Expect = e-178
Identities = 522/590 (88%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 622 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 563
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 562 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 503
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 502 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 443
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 442 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 383
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 382 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 323
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 322 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 263
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct: 262 ctttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgt 203
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 cgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtga 143
Query: 753 ggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggt 809
|||||| |||| ||| | ||||| |||||||||||||||||||| || | ||| ||
Sbjct: 142 ggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagt 83
Query: 810 cgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 82 cccggttgcactccgtcagctccttctgcacgcgcgacacgtccaccatc 33
>gb|CV053954.1|CV053954 BNEL105a9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105a9 5' similar to putative
ubiquitin conjugating enzyme, mRNA sequence
Length = 706
Score = 626 bits (316), Expect = e-178
Identities = 522/590 (88%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 664 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 605
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 604 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 545
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 544 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 485
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 484 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 425
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 424 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 365
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 364 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 305
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct: 304 ctttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgt 245
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 244 cgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtga 185
Query: 753 ggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggt 809
|||||| |||| ||| | ||||| |||||||||||||||||||| || | ||| ||
Sbjct: 184 ggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagt 125
Query: 810 cgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 124 cccggttgcactccgtcagctccttctgcacgcgcgacacgtccaccatc 75
>gb|BE421433.1|BE421433 HWM009.C06 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.C06, mRNA sequence
Length = 840
Score = 597 bits (301), Expect = e-169
Identities = 508/577 (88%), Gaps = 3/577 (0%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 689 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 630
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 629 ttctcaccatatcctcgngnaagcccatctccaccagcttctgcaccttttcttccatgc 570
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 569 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 510
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 509 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 450
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 449 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 390
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 389 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 330
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct: 329 ctttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgt 270
Query: 693 cgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtga 752
||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 269 cgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtga 210
Query: 753 ggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggt 809
|||||| |||| ||| | ||||| |||||||||||||||||||| || | ||| ||
Sbjct: 209 ggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagt 150
Query: 810 cgcggttgcactcggtgagctccttctgcacgcgcga 846
| ||||||||||| || ||||||||||||||||||||
Sbjct: 149 cccggttgcactccgtcagctccttctgcacgcgcga 113
>gb|BQ470613.1|BQ470613 HX03H24r HX Hordeum vulgare subsp. vulgare cDNA clone HX03H24
5-PRIME, mRNA sequence
Length = 620
Score = 529 bits (267), Expect = e-149
Identities = 452/513 (88%), Gaps = 3/513 (0%)
Strand = Plus / Minus
Query: 350 gggaagcccatctcaaccagcttctgcaccttctcttccatgcccgttgatgcactcttc 409
|||||||||||||| ||||||||||||||||| ||||||||||| || || | |||||
Sbjct: 619 gggaagcccatctccaccagcttctgcaccttttcttccatgccagtggagtcgctcttt 560
Query: 410 gcaaaggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgcaggtac 469
||||| ||||| ||||| |||||||| ||| ||||||| | | ||||||||| |||
Sbjct: 559 gcaaacgcctcggtccaatagcgagcagtactaacaaatgtggccttgtcacgcagatac 500
Query: 470 tgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttga 529
||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct: 499 tgttgtgcaacaacagcatcctgaggatcatcaggggcaggagcagaaagaagagcttga 440
Query: 530 agggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtcc 589
||||| || | || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 agggatagcaatgccgtcttcaaggtaagggctgggctccactgatctttcagtatgtcc 380
Query: 590 aagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaactgc 649
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 379 aagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatgaactgc 320
Query: 650 atcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccg 709
||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||| || |||
Sbjct: 319 atcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaaggttccg 260
Query: 710 ccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttgg-- 767
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 259 ccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatgctggag 200
Query: 768 -cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtg 826
| ||||| |||||||||||||||||||| || | ||| ||| ||||||||||| ||
Sbjct: 199 cccccgtcatggagcgcgatggagacgccggagatgtccgagtcccggttgcactccgtc 140
Query: 827 agctccttctgcacgcgcgagacgtccaccatc 859
|||||||||||||||||||| ||||||||||||
Sbjct: 139 agctccttctgcacgcgcgacacgtccaccatc 107
>gb|BU987610.1|BU987610 HF15D24r HF Hordeum vulgare subsp. vulgare cDNA clone HF15D24
5-PRIME, mRNA sequence
Length = 584
Score = 511 bits (258), Expect = e-143
Identities = 443/504 (87%), Gaps = 3/504 (0%)
Strand = Plus / Minus
Query: 359 atctcaaccagcttctgcaccttctcttccatgcccgttgatgcactcttcgcaaaggcc 418
||||| ||||||||||||||||| ||||||||||| || || | ||||| ||||| |||
Sbjct: 584 atctccaccagcttctgcaccttttcttccatgccagtggagtcgctctttgcaaacgcc 525
Query: 419 tctgtccagtagcgagccgtagcggcaaatgttggatagtcacgcaggtactgttgggca 478
|| ||||| |||||||| ||| ||||||| | | ||||||||| |||||||| |||
Sbjct: 524 tcggtccaatagcgagcagtactaacaaatgtggccttgtcacgcagatactgttgtgca 465
Query: 479 acaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaagggaaagg 538
|||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||
Sbjct: 464 acaacagcatcctgaggatcatcaggggcaggagcagaaagaagagcttgaagggatagc 405
Query: 539 agagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaatt 598
| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 404 aatgccgtcttcaaggtaagggctgggctccactgatctttcagtatgtccaagcaaatt 345
Query: 599 gctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgga 658
||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||
Sbjct: 344 gctccattttggctgctaatattcgggtgccatactttggtgatgaactgcatcttagga 285
Query: 659 ggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccgccctcgtag 718
|||||||||||||| ||||| ||||||||||| |||||| ||| || ||||||||||||
Sbjct: 284 ggctcaaagggatagccacctggcaggcggatgtcgatgcggaaggttccgccctcgtag 225
Query: 719 gggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttgg---cgccgtcg 775
||||||||| ||||||||||||||||||||||||||||| |||| ||| | |||||
Sbjct: 224 gggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatgctggagcccccgtca 165
Query: 776 tggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtgagctccttc 835
|||||||||||||||||||| || | ||| ||| ||||||||||| || |||||||||
Sbjct: 164 tggagcgcgatggagacgccggagatgtccgagtcccggttgcactccgtcagctccttc 105
Query: 836 tgcacgcgcgagacgtccaccatc 859
||||||||||| ||||||||||||
Sbjct: 104 tgcacgcgcgacacgtccaccatc 81
>gb|BF065146.3|BF065146 HV_CEb0023I04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023I04f, mRNA sequence
Length = 562
Score = 507 bits (256), Expect = e-142
Identities = 438/498 (87%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 365 accagcttctgcaccttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtc 424
||||||||||||||||| ||||||||||| || || | ||||| ||||| ||||| |||
Sbjct: 558 accagcttctgcaccttttcttccatgccagtggagtcgctctttgcaaacgcctcggtc 499
Query: 425 cagtagcgagccgtagcggcaaatgttggatagtcacgcaggtactgttgggcaacaaca 484
|| |||||||| ||| ||||||| | | ||||||||| |||||||| |||||||||
Sbjct: 498 caatagcgagcagtactaacaaatgtggccttgtcacgcagatactgttgtgcaacaaca 439
Query: 485 gcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaagggaaaggagagca 544
|||||||||||||||||||| ||||||| |||||| |||||||||||||| || | ||
Sbjct: 438 gcatcctgaggatcatcaggggcaggagcagaaagaagagcttgaagggatagcaatgcc 379
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 378 gtcttcaaggtaagggctgggctccactgatctttcagtatgtccaagcaaattgctcca 319
Query: 605 ttttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcggaggctca 664
||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 ttttggctgctaatattcgggtgccatactttggtgatgaactgcatcttaggaggctca 259
Query: 665 aagggatatccaccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctg 724
|||||||| ||||| ||||||||||| |||||| ||| || ||||||||||||||||||
Sbjct: 258 aagggatagccacctggcaggcggatgtcgatgcggaaggttccgccctcgtaggggctg 199
Query: 725 tcggcgggcccggcgatggtgccggtgaggtgggagatgttgg---cgccgtcgtggagc 781
||| ||||||||||||||||||||||||||||| |||| ||| | ||||| ||||||
Sbjct: 198 tcgcggggcccggcgatggtgccggtgaggtgggtgatgctggagcccccgtcatggagc 139
Query: 782 gcgatggagacgcccgatacctcccggtcgcggttgcactcggtgagctccttctgcacg 841
|||||||||||||| || | ||| ||| ||||||||||| || |||||||||||||||
Sbjct: 138 gcgatggagacgccggagatgtccgagtcccggttgcactccgtcagctccttctgcacg 79
Query: 842 cgcgagacgtccaccatc 859
||||| ||||||||||||
Sbjct: 78 cgcgacacgtccaccatc 61
>gb|CV063249.1|CV063249 BNEL88c2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL88c2 5' similar to putative
ubiquitin conjugating enzyme, mRNA sequence
Length = 703
Score = 494 bits (249), Expect = e-138
Identities = 514/595 (86%), Gaps = 8/595 (1%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccat-gttctcgtcgcca-tccacgctcttcagggc 330
|||||||||||||||| || |||| ||| ||| |||||||| | ||||||||||||||
Sbjct: 669 agccagagcagagcttctcaagaggcattgttttcgtcgccggttcacgctcttcagggg 610
Query: 331 a-cttctcacctgatcctctggg-aagcccatctcaaccagcttctgcaccttctcttcc 388
||||||||| |||||| ||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 609 ggcttctcaccatatcctcggggnaagcccatctccaccagtttctgcaccttttcttcc 550
Query: 389 atgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaat 448
||||| || || | ||||| ||||| || ||||| |||||||| ||| |||||
Sbjct: 549 atgccagtggagtcgctctttgcaaacgctcgggtccaatagcgagcagtactaacaaat 490
Query: 449 gttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgca 508
|| | | ||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 489 gtggccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggca 430
Query: 509 ggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctc 568
|||| |||||| |||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 429 ggagcagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctc 370
Query: 569 cactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgtt-agggtg 627
|||||||||||||| |||||||||||||||||||||||||||||||| || || |||||
Sbjct: 369 cactgatctttcagtatgtccaagcaaattgctccattttggctgctaatattcggggtg 310
Query: 628 ccatactttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcg 687
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 309 ccatactttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcg 250
Query: 688 gatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgcc 747
||| |||||| ||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 gatgtcgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgcc 190
Query: 748 ggtgaggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctc 804
||||||||||| |||| ||| | ||||| |||||||||||||||||||| || | ||
Sbjct: 189 ggtgaggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtc 130
Query: 805 ccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
| ||| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 129 cgagtcccggttgcactccgtcagctccttctgcacgcgcgacacgtccaccatc 75
>gb|CV055842.1|CV055842 BNEL124a9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL124a9 5' similar to putative
ubiquitin conjugating enzyme, mRNA sequence
Length = 696
Score = 492 bits (248), Expect = e-137
Identities = 449/514 (87%), Gaps = 4/514 (0%)
Strand = Plus / Minus
Query: 350 gggaagcccatctcaaccagcttctgcaccttctctt-ccatgcccgttgatgcactctt 408
|||||||||||||| ||||| || |||||||| |||| ||||||| || || | |||||
Sbjct: 588 gggaagcccatctccaccagtttttgcaccttttctttccatgccagtggagtcgctctt 529
Query: 409 cgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgcaggta 468
||||| ||||| ||||| |||||||| ||| ||||||| | | ||||||||| ||
Sbjct: 528 tgcaaacgcctcggtccaatagcgagcagtactaacaaatgtggccttgtcacgcagata 469
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| |||||||||||||| |||||||||||||| ||||||| |||||| ||||||||
Sbjct: 468 ctgttgtgcaacaacagcatcttgaggatcatcaggggcaggagcagaaagaagagcttg 409
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
|||||| || | || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 408 aagggatagcaatgccgtcttcaaggtaagggctgggctccactgatctttcagtatgtc 349
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaactg 648
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 348 caagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatgaactg 289
Query: 649 catcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgcc 708
|||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||| || ||
Sbjct: 288 catcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaaggttcc 229
Query: 709 gccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttgg- 767
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 228 gccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatgctgga 169
Query: 768 --cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggt 825
| ||||| |||||||||||||||||||| || | ||| ||| ||||||||||| ||
Sbjct: 168 gcccccgtcatggagcgcgatggagacgccggagatgtccgagtcccggttgcactccgt 109
Query: 826 gagctccttctgcacgcgcgagacgtccaccatc 859
|||||||||||||||||||| ||||||||||||
Sbjct: 108 cagctccttctgcacgcgcgacacgtccaccatc 75
>gb|BQ663901.1|BQ663901 HU04I10u HU Hordeum vulgare subsp. vulgare cDNA clone HU04I10
3-PRIME, mRNA sequence
Length = 600
Score = 486 bits (245), Expect = e-136
Identities = 380/425 (89%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 175 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 234
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 235 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 294
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 295 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 354
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 355 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 414
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 415 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 474
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 475 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 534
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatat 692
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct: 535 ctttggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgt 594
Query: 693 cgatg 697
|||||
Sbjct: 595 cgatg 599
>gb|BU980549.1|BU980549 HA20P21r HA Hordeum vulgare subsp. vulgare cDNA clone HA20P21
5-PRIME, mRNA sequence
Length = 547
Score = 478 bits (241), Expect = e-133
Identities = 405/459 (88%), Gaps = 3/459 (0%)
Strand = Plus / Minus
Query: 404 ctcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgc 463
||||| ||||| ||||| ||||| |||||||| ||| ||||||| | | |||||||
Sbjct: 543 ctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtggccttgtcacgc 484
Query: 464 aggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcaga 523
|| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct: 483 agatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggagcagaaagaaga 424
Query: 524 gcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcaga 583
||||||||||| || | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccactgatctttcagt 364
Query: 584 atgtccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatg 643
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 363 atgtccaagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatg 304
Query: 644 aactgcatcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaac 703
||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| |||
Sbjct: 303 aactgcatcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaag 244
Query: 704 gtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatg 763
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 243 gttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatg 184
Query: 764 ttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcac 820
||| | ||||| |||||||||||||||||||| || | ||| ||| |||||||||
Sbjct: 183 ctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagtcccggttgcac 124
Query: 821 tcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|| || |||||||||||||||||||| ||||||||||||
Sbjct: 123 tccgtcagctccttctgcacgcgcgacacgtccaccatc 85
>gb|CA023781.1|CA023781 HZ47G06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47G06
5-PRIME, mRNA sequence
Length = 519
Score = 478 bits (241), Expect = e-133
Identities = 405/459 (88%), Gaps = 3/459 (0%)
Strand = Plus / Minus
Query: 404 ctcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgc 463
||||| ||||| ||||| ||||| |||||||| ||| ||||||| | | |||||||
Sbjct: 502 ctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtggccttgtcacgc 443
Query: 464 aggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcaga 523
|| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct: 442 agatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggagcagaaagaaga 383
Query: 524 gcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcaga 583
||||||||||| || | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccactgatctttcagt 323
Query: 584 atgtccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatg 643
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 322 atgtccaagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatg 263
Query: 644 aactgcatcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaac 703
||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| |||
Sbjct: 262 aactgcatcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaag 203
Query: 704 gtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatg 763
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 202 gttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatg 143
Query: 764 ttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcac 820
||| | ||||| |||||||||||||||||||| || | ||| ||| |||||||||
Sbjct: 142 ctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagtcccggttgcac 83
Query: 821 tcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|| || |||||||||||||||||||| ||||||||||||
Sbjct: 82 tccgtcagctccttctgcacgcgcgacacgtccaccatc 44
>gb|BJ474727.1|BJ474727 BJ474727 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal20p12 3', mRNA sequence
Length = 657
Score = 458 bits (231), Expect = e-127
Identities = 354/395 (89%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 263 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 322
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 323 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 382
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || ||||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 383 cagtggagtcactctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 442
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 443 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 502
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 503 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 562
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 563 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 622
Query: 633 ctttggtgatgaactgcatcttcggaggctcaaag 667
|||||||||||||||||||||| ||||||||||||
Sbjct: 623 ctttggtgatgaactgcatcttaggaggctcaaag 657
>gb|CV057001.1|CV057001 BNEL22h8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL22h8 5' similar to putative
ubiquitin conjugating enzyme, mRNA sequence
Length = 559
Score = 440 bits (222), Expect = e-122
Identities = 363/407 (89%), Gaps = 5/407 (1%)
Strand = Plus / Minus
Query: 457 gtcacgcaggtactgttgggcaacaacag-catcctgaggatcatcaggtgcaggagaag 515
||||||||| |||||||| ||| |||||| |||| |||||||||||||| ||||||| ||
Sbjct: 480 gtcacgcagatactgttgtgca-caacagncatcntgaggatcatcaggggcaggagcag 422
Query: 516 aaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgat 575
|||| |||||||||||||| || | || |||||||||||||||||||||||||||||||
Sbjct: 421 aaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccactgat 362
Query: 576 ctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccatactt 635
||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 361 ctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccatactt 302
Query: 636 tggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatatcga 695
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 301 tggtgatgaactgcatcttaggaggctcaaagggatagccacctggcaggcggatgtcga 242
Query: 696 tgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggt 755
|| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 tgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggt 182
Query: 756 gggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgc 812
||| |||| ||| | ||||| |||||||||||||||||||| || | ||| ||| |
Sbjct: 181 gggtgatgctggagcccccgtcatggagcgcgatggagacgccggagatgtccgagtccc 122
Query: 813 ggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatc 859
|||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 121 ggttgcactccgtcagctccttctgcacgcgcgacacgtccaccatc 75
>gb|BU997980.1|BU997980 HI09J15r HI Hordeum vulgare subsp. vulgare cDNA clone HI09J15
5-PRIME, mRNA sequence
Length = 464
Score = 432 bits (218), Expect = e-120
Identities = 402/464 (86%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 384 cttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcgg 443
|||||||||| || || | ||||| || || ||||| ||||| |||||||| |||
Sbjct: 464 cttccatgccagtggagtcgctctttgcnaacgcctcggtccaatagcgagcagtactaa 405
Query: 444 caaatgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcag 503
||||||| | | ||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 404 caaatgtggccttgtcacgcagatactgttgtgcnncaacagcatcctgaggatcatcag 345
Query: 504 gtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctg 563
| ||||||| |||||| |||||||||||||| || | || |||||||||||||||||||
Sbjct: 344 gggcaggagcagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctg 285
Query: 564 ggctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttag 623
||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || |
Sbjct: 284 ggctccactgatctttcagtatgtccaagcnaattgctccattttggctgctaatattcg 225
Query: 624 ggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggca 683
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 224 ggtgccatactttggtgatgaactgcatcttaggaggctcaaagggatagccacctggca 165
Query: 684 ggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatgg 743
||||||| |||||| ||| || ||||||||||||||||||||| ||||||||||||||
Sbjct: 164 ggcggatgtcgatgcggaaggttccgccctcgtaggggctgtcgcggggcccggcgatgg 105
Query: 744 tgccggtgaggtgggagatgttgg---cgccgtcgtggagcgcgatggagacgcccgata 800
||||||||||||||| |||| ||| | ||||| |||||||||||||||||||| || |
Sbjct: 104 tgccggtgaggtgggtgatgctggagcccccgtcatggagcgcgatggagacgccggaga 45
Query: 801 cctcccggtcgcggttgcactcggtgagctccttctgcacgcgc 844
||| ||| ||||||||||| || ||||||||||||||||||
Sbjct: 44 tgtccgagtcccggttgcactccgtcagctccttctgcacgcgc 1
>gb|BQ665412.1|BQ665412 HX03H24u HX Hordeum vulgare subsp. vulgare cDNA clone HX03H24
3-PRIME, mRNA sequence
Length = 551
Score = 426 bits (215), Expect = e-118
Identities = 338/379 (89%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 173 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 232
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 233 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 292
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 293 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 352
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 353 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 412
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 413 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 472
Query: 573 gatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccata 632
|||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 473 gatctttcagtatgtccaagcaaattgctccattttggctgctaatattcgggtgccata 532
Query: 633 ctttggtgatgaactgcat 651
|||||||||||||||||||
Sbjct: 533 ctttggtgatgaactgcat 551
>gb|BG414736.2|BG414736 HVSMEk0003H20f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0003H20f, mRNA sequence
Length = 812
Score = 418 bits (211), Expect = e-115
Identities = 347/392 (88%), Gaps = 3/392 (0%)
Strand = Plus / Minus
Query: 470 tgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttga 529
||||| |||||||||||||| |||||||||||||| ||||||| |||||| |||||||||
Sbjct: 466 tgttgtgcaacaacagcatcttgaggatcatcaggggcaggagcagaaagaagagcttga 407
Query: 530 agggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtcc 589
||||| || | || |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 406 agggatagcaatgccgtcttcaaggtaagggatgggctccactgatctttcagtatgtcc 347
Query: 590 aagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaactgc 649
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 346 aagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatgaactgc 287
Query: 650 atcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccg 709
||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||| || |||
Sbjct: 286 atcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaaggttccg 227
Query: 710 ccctcgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttgg-- 767
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 226 ccctcgtaggggctgtcgcggggcccggcgatggtgccggtgaggtgggtgatgctggag 167
Query: 768 -cgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtg 826
| ||||| |||||||||||||||||||| || | ||| ||| ||||||||||| ||
Sbjct: 166 cccccgtcatggagcgcgatggagacgccggagatgtccgagtcccggttgcactccgtc 107
Query: 827 agctccttctgcacgcgcgagacgtccaccat 858
||||| ||||||||||| || | |||||||||
Sbjct: 106 agctcattctgcacgcgngacaagtccaccat 75
Score = 44.1 bits (22), Expect = 0.008
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 296 gccatgttctcgtcgccatccacgctcttcagggcacttctcacctgatcctctgggaag 355
|||||||||| || ||| | ||||||||| ||||| ||||||| |||||| ||||||
Sbjct: 640 gccatgttctggttgccgttcacgctcttaagggcgtttctcacaatatcctcggggaag 581
Query: 356 cccatctcaaccagcttctgcacctt 381
||||| || ||| |||| |||||||
Sbjct: 580 cccatatccaccggcttgggcacctt 555
>gb|BI779837.2|BI779837 EBem07_SQ001_C05_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ001_C05 5', mRNA sequence
Length = 454
Score = 418 bits (211), Expect = e-115
Identities = 330/369 (89%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 494 ggatcatcaggtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaag 553
||||||||||| ||||||| |||||| |||||||||||||| || | || |||||||||
Sbjct: 454 ggatcatcaggggcaggagcagaaagaagagcttgaagggatagcaatgccgtcttcaag 395
Query: 554 gtaagggctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctg 613
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 394 gtaagggctgggctccactgatctttcagtatgtccaagcaaattgctccattttggctg 335
Query: 614 ctgatgttagggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatat 673
|| || || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 334 ctaatattcgggtgccatactttggtgatgaactgcatcttaggaggctcaaagggatag 275
Query: 674 ccaccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggc 733
||||| ||||||||||| |||||| ||| || ||||||||||||||||||||| ||||
Sbjct: 274 ccacctggcaggcggatgtcgatgcggaaggttccgccctcgtaggggctgtcgcggggc 215
Query: 734 ccggcgatggtgccggtgaggtgggagatgttgg---cgccgtcgtggagcgcgatggag 790
||||||||||||||||||||||||| |||| ||| | ||||| |||||||||||||||
Sbjct: 214 ccggcgatggtgccggtgaggtgggtgatgctggagcccccgtcatggagcgcgatggag 155
Query: 791 acgcccgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacg 850
||||| || | ||| ||| ||||||||||| || |||||||||||||||||||| |||
Sbjct: 154 acgccggagatgtccgagtcccggttgcactccgtcagctccttctgcacgcgcgacacg 95
Query: 851 tccaccatc 859
|||||||||
Sbjct: 94 tccaccatc 86
>gb|CA004164.1|CA004164 HS16M09r HS Hordeum vulgare subsp. vulgare cDNA clone HS16M09
5-PRIME, mRNA sequence
Length = 413
Score = 416 bits (210), Expect = e-115
Identities = 329/368 (89%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 495 gatcatcaggtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaagg 554
|||||||||| ||||||| |||||| |||||||||||||| || | || ||||||||||
Sbjct: 413 gatcatcaggggcaggagcagaaagaagagcttgaagggatagcaatgccgtcttcaagg 354
Query: 555 taagggctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctgc 614
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 353 taagggctgggctccactgatctttcagtatgtccaagcaaattgctccattttggctgc 294
Query: 615 tgatgttagggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatatc 674
| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 293 taatattcgggtgccatactttggtgatgaactgcatcttaggaggctcaaagggatagc 234
Query: 675 caccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcc 734
|||| ||||||||||| |||||| ||| || ||||||||||||||||||||| |||||
Sbjct: 233 cacctggcaggcggatgtcgatgcggaaggttccgccctcgtaggggctgtcgcggggcc 174
Query: 735 cggcgatggtgccggtgaggtgggagatgttgg---cgccgtcgtggagcgcgatggaga 791
|||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||
Sbjct: 173 cggcgatggtgccggtgaggtgggtgatgctggagcccccgtcatggagcgcgatggaga 114
Query: 792 cgcccgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgt 851
|||| || | ||| ||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct: 113 cgccggagatgtccgagtcccggttgcactccgtcagctccttctgcacgcgcgacacgt 54
Query: 852 ccaccatc 859
||||||||
Sbjct: 53 ccaccatc 46
>gb|BQ656875.1|BQ656875 HA01M01u HA Hordeum vulgare subsp. vulgare cDNA clone HA01M01
3-PRIME, mRNA sequence
Length = 528
Score = 355 bits (179), Expect = 2e-096
Identities = 296/335 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 194 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 253
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 254 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 313
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 314 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 373
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 374 ccttgtcacgcatatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 433
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 434 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 493
Query: 573 gatctttcagaatgtccaagcaaattgctccattt 607
|||||||||| ||||||||||||||||||||||||
Sbjct: 494 gatctttcagtatgtccaagcaaattgctccattt 528
>gb|BF628052.2|BF628052 HVSMEb0003A03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003A03f, mRNA sequence
Length = 498
Score = 339 bits (171), Expect = 1e-091
Identities = 234/255 (91%)
Strand = Plus / Minus
Query: 468 actgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagctt 527
||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct: 497 actgttgtgcaacaacagcatcctgaggatcatcaggggcaggagcagaaagaagagctt 438
Query: 528 gaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgt 587
||||||| || | || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 437 gaagggatagcaatgccgtcttcaaggtaagggctgggctccactgatctttcagtatgt 378
Query: 588 ccaagcaaattgctccattttggctgctgatgttagggtgccatactttggtgatgaact 647
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 377 ccaagcaaattgctccattttggctgctaatattcgggtgccatactttggtgatgaact 318
Query: 648 gcatcttcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgc 707
||||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||| || |
Sbjct: 317 gcatcttaggaggctcaaagggatagccacctggcaggcggatgtcgatgcggaaggttc 258
Query: 708 cgccctcgtaggggc 722
|||||||||||||||
Sbjct: 257 cgccctcgtaggggc 243
>gb|AV937146.1|AV937146 AV937146 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9g24 3', mRNA sequence
Length = 585
Score = 329 bits (166), Expect = 1e-088
Identities = 274/310 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 276 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 335
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 336 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 395
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || ||||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 396 cagtggagtcactctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 455
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 456 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 515
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 516 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 575
Query: 573 gatctttcag 582
||||||||||
Sbjct: 576 gatctttcag 585
>gb|CB859177.1|CB859177 HI09J15w HI Hordeum vulgare subsp. vulgare cDNA clone HI09J15
3-PRIME, mRNA sequence
Length = 521
Score = 325 bits (164), Expect = 2e-087
Identities = 278/316 (87%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 206 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 265
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 266 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 325
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 326 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 385
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 386 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 445
Query: 513 aagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccact 572
|||||| |||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 446 cagaaagaagagcttgaagggatagcaatgccgtcttcaaggtaagggctgggctccact 505
Query: 573 gatctttcagaatgtc 588
|||||||||| |||||
Sbjct: 506 gatctttcagtatgtc 521
>gb|BU967849.1|BU967849 HB05J05r BC Hordeum vulgare subsp. vulgare cDNA clone HB05J05
5-PRIME, mRNA sequence
Length = 372
Score = 266 bits (134), Expect = 1e-069
Identities = 230/262 (87%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 286 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 227
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 226 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 167
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 166 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 107
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 106 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 47
Query: 513 aagaaagcagagcttgaaggga 534
|||||| ||||||||||||||
Sbjct: 46 cagaaagaagagcttgaaggga 25
>gb|BU999946.1|BU999946 HS16M09u HS Hordeum vulgare subsp. vulgare cDNA clone HS16M09
3-PRIME, mRNA sequence
Length = 566
Score = 266 bits (134), Expect = 1e-069
Identities = 230/262 (87%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 294 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 353
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 354 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 413
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 414 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 473
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 474 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 533
Query: 513 aagaaagcagagcttgaaggga 534
|||||| ||||||||||||||
Sbjct: 534 cagaaagaagagcttgaaggga 555
>gb|CA028329.1|CA028329 HZ61K13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61K13
5-PRIME, mRNA sequence
Length = 426
Score = 266 bits (134), Expect = 1e-069
Identities = 230/262 (87%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 273 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 214
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 213 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 154
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttg 452
| || || | ||||| ||||| ||||| ||||| |||||||| ||| ||||||| |
Sbjct: 153 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagcagtactaacaaatgtgg 94
Query: 453 gatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggag 512
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 93 ccttgtcacgcagatactgttgtgcaacaacagcatcctgaggatcatcaggggcaggag 34
Query: 513 aagaaagcagagcttgaaggga 534
|||||| ||||||||||||||
Sbjct: 33 cagaaagaagagcttgaaggga 12
>gb|AV918801.1|AV918801 AV918801 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22f01 3', mRNA sequence
Length = 355
Score = 188 bits (95), Expect = 2e-046
Identities = 146/163 (89%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 146 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 205
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 206 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 265
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagc 435
| || || ||||||| ||||| ||||| ||||| ||||||||
Sbjct: 266 cagtggagtcactctttgcaaacgcctcggtccaatagcgagc 308
>gb|BQ662705.1|BQ662705 HS03L01u HS Hordeum vulgare subsp. vulgare cDNA clone HS03L01
3-PRIME, mRNA sequence
Length = 370
Score = 180 bits (91), Expect = 6e-044
Identities = 145/163 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 199 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 258
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgc 392
|||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 259 ttctcaccatatcctcggggaagcccatctccaccagcttctgcaccttttcttccatgc 318
Query: 393 ccgttgatgcactcttcgcaaaggcctctgtccagtagcgagc 435
| || || | ||||| ||||| ||||| ||||| ||||||||
Sbjct: 319 cagtggagtcgctctttgcaaacgcctcggtccaatagcgagc 361
>gb|BQ469236.1|BQ469236 HM03M20r HM Hordeum vulgare subsp. vulgare cDNA clone HM03M20
5-PRIME, mRNA sequence
Length = 321
Score = 149 bits (75), Expect = 2e-034
Identities = 99/107 (92%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 116 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 57
Query: 333 ttctcacctgatcctctgggaagcccatctcaaccagcttctgcacc 379
|||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 56 ttctcaccatatcctcggggaagcccatctccaccagcttctgcacc 10
>gb|CV061944.1|CV061944 BNEL74f2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL74f2 5' similar to Zea mays
CL9888_1 mRNA sequence
Length = 264
Score = 125 bits (63), Expect = 3e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 273 agccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcac 332
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 94 agccagagcagagcttctcgagagccatgttctcgtcgccgttcacgctcttcagggcgc 35
Query: 333 ttctcacctgatcctctgggaagcccatctc 363
|||||||| |||||| ||||||||||||||
Sbjct: 34 ttctcaccatatcctcggggaagcccatctc 4
>gb|BF627118.2|BF627118 HVSMEb0002O24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002O24f, mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 770 ccgtcgtggagcgcgatggaga 791
||||||||||||||||||||||
Sbjct: 197 ccgtcgtggagcgcgatggaga 176
>gb|BG300886.1|BG300886 HVSMEb0018M24f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018M24f, mRNA sequence
Length = 867
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 770 ccgtcgtggagcgcgatggaga 791
||||||||||||||||||||||
Sbjct: 197 ccgtcgtggagcgcgatggaga 176
>gb|BE215303.1|BE215303 HV_CEb0006G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006G21f, mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 770 ccgtcgtggagcgcgatggaga 791
||||||||||||||||||||||
Sbjct: 213 ccgtcgtggagcgcgatggaga 192
>gb|AV915252.1|AV915252 AV915252 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i23 5', mRNA sequence
Length = 697
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 770 ccgtcgtggagcgcgatggaga 791
||||||||||||||||||||||
Sbjct: 222 ccgtcgtggagcgcgatggaga 201
>gb|AV921860.1|AV921860 AV921860 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13i23 3', mRNA sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 770 ccgtcgtggagcgcgatggaga 791
||||||||||||||||||||||
Sbjct: 610 ccgtcgtggagcgcgatggaga 631
>gb|BI947770.1|BI947770 HVSMEl0006N08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006N08f, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 273 agccagagcagagcttttcgagagccatgttctcgt 308
||||| |||||||||| |||| |||||||||||||
Sbjct: 236 agccaaagcagagcttctcgaaggccatgttctcgt 271
>gb|BQ764609.1|BQ764609 EBca01_SQ004_J10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_J10 5', mRNA sequence
Length = 258
Score = 40.1 bits (20), Expect = 0.13
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcctggctctcc 913
||||||||||||| |||||| |||||||
Sbjct: 63 cgccgccgtcaccacctcctcgctctcc 90
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,951
Number of Sequences: 312970
Number of extensions: 125951
Number of successful extensions: 37050
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36943
Number of HSP's gapped (non-prelim): 55
length of query: 945
length of database: 175,134,539
effective HSP length: 19
effective length of query: 926
effective length of database: 169,188,109
effective search space: 156668188934
effective search space used: 156668188934
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)