BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405087.2.1
(737 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate sy... 557 e-157
gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots... 472 e-132
gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Le... 379 e-104
gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA li... 260 6e-068
gb|AV914348.1|AV914348 AV914348 K. Sato unpublished cDNA li... 206 7e-052
gb|BU975604.1|BU975604 HB31K24r BC Hordeum vulgare subsp. v... 192 1e-047
gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA li... 168 2e-040
gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. v... 168 2e-040
gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed D... 161 4e-038
gb|AV917170.1|AV917170 AV917170 K. Sato unpublished cDNA li... 157 6e-037
gb|CA022248.1|CA022248 HZ42J07r HZ Hordeum vulgare subsp. v... 121 3e-026
gb|BE193243.1|BE193243 HVSMEh0080E17f Hordeum vulgare 5-45 ... 103 8e-021
gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedl... 103 8e-021
gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. v... 103 8e-021
gb|BU968420.1|BU968420 HB07H08r BC Hordeum vulgare subsp. v... 103 8e-021
gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgar... 82 3e-014
gb|CA011510.1|CA011510 HT05E02u HT Hordeum vulgare subsp. v... 70 1e-010
gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA li... 46 0.002
gb|BU985379.1|BU985379 HF06P13r HF Hordeum vulgare subsp. v... 44 0.006
gb|BU985680.1|BU985680 HF08E20r HF Hordeum vulgare subsp. v... 44 0.006
>gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate synthase mRNA, partial cds
Length = 2085
Score = 557 bits (281), Expect = e-157
Identities = 617/729 (84%)
Strand = Plus / Plus
Query: 1 cagagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaatta 60
|||||| |||||||| | ||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 807 cagagaaaatggactaaaaaatattcaccaattttcctggcctgaacattgcaagaatca 866
Query: 61 cctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcg 120
||||||||||||| | |||||||| || ||||||||| | |||| || |||||| |
Sbjct: 867 cctgtcaaggatattgactcttggtatgagatctcctgctgtcggtagcaaagaggaaag 926
Query: 121 gagtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaa 180
|||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 927 gagtaaggcaccaatatcaggaaggaagcatatcattgttatttctgtagactctgttaa 986
Query: 181 caaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacat 240
|||||| | |||||| |||| ||||||||||| ||||||| | ||||| ||||||||
Sbjct: 987 caaggaggatctagtgcggatcatcagaaatgcaattgaggccgcacatacagaaaacac 1046
Query: 241 gtcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcact 300
||| || ||||||||| |||||||||||||| |||| |||||||| ||| ||||||
Sbjct: 1047 accggctttaactggtttcgtgctgtcaacttcgctaacaatatcagagatatgttcact 1106
Query: 301 gctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggag 360
|||| |||||| |||||||| ||| ||| ||||||||||||||||||||| ||||||||
Sbjct: 1107 gctagtatctgtaggcatgcatcctgctggttttgatgctttcatctgcaacagtgggag 1166
Query: 361 taacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgc 420
|| |||||||||||||||| |||| | | ||| ||| ||| |||||| ||||| ||
Sbjct: 1167 tagcatttactatccttcatattctggtaatacgccaagcaattccaaggttacacatgt 1226
Query: 421 attagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaa 480
| |||||| |||||| || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1227 aatagatcgaaatcatcaatcacatattgagtatcgttggggaggagaaggtctaagaaa 1286
Query: 481 atatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaat 540
||||||||||| ||||| |||||||||||||||||||||||||||| || || || ||
Sbjct: 1287 gtatcttgtgaaatgggctacttcagtggtagaaagaaagggaagaattgaaaggcagat 1346
Query: 541 tatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatcc 600
||||| |||||| |||| |||||||| | |||||||||||||||| |||||| |||||
Sbjct: 1347 gattttcgaagattcagaacactcttctacctattgtcttgcatttaaagtggtcaatcc 1406
Query: 601 caatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttg 660
|||||||| ||||| | |||||||||||||| |||||||||||||| || || |||||
Sbjct: 1407 aaatcatctgcctcccctgaaggagttgaggaaattgatgagaatccagtcgcttcgttg 1466
Query: 661 caatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacg 720
||||| | ||||||||||||||||||||| | |||||| ||||| || || |||||
Sbjct: 1467 taatgcgctgtataaccacagcgctaccagactgtctgtaactcctattcatgcgtcacg 1526
Query: 721 ctctcaggc 729
||||||||
Sbjct: 1527 ttctcaggc 1535
>gb|AL503268.1|AL503268 AL503268 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01G06T 5', mRNA sequence
Length = 683
Score = 472 bits (238), Expect = e-132
Identities = 553/658 (84%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 44 gaacattgcaagaattacctgtcaaggatactaactcttggcccaaggtctcctgctatt 103
||||||||||||||| |||||||||||||| | |||||||| || ||||||||| |
Sbjct: 4 gaacattgcaagaatcacctgtcaaggatattgactcttggtatgagatctcctgctgtc 63
Query: 104 ggtaacagagaggagcggagtaatacacctatttcaggaaggaagaatatcattgttatt 163
|| | || |||||| ||||||| |||| || ||| |||||||| ||||||||||||||
Sbjct: 64 ggnagcaaagaggaaaggagtaaggcaccaatatcangaaggaagcatatcattgttatt 123
Query: 164 tctgtagactctgttaacaaggaaggtctagtcaggataatcagaaatgctattgaggtc 223
||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||| |
Sbjct: 124 tctgtagactctgttaacaaggaggatctagtgcggatcatcagaaatgcaattgaggcc 183
Query: 224 atacataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgata 283
||||| |||||||| ||| || ||||||||| |||||||||||||| |||| |||
Sbjct: 184 gcacatacagaaaacacaccggctttaactggtttcgtgctgtcaacttcgctaacaata 243
Query: 284 tcagaaatacattcactgctactatctggaggcatgcttcccactgattttgatgctttc 343
||||| ||| |||||||||| |||||| |||||||| ||| ||| |||||||||||||
Sbjct: 244 tcagagatatgttcactgctagtatctgtaggcatgcatcctgctggttttgatgctttc 303
Query: 344 atctgcaatagtgggagtaacatttactatccttcacattccagagaaacgtcaaacaac 403
|||||||| || ||||||| |||||||||||||||| |||| | | ||| ||| |||
Sbjct: 304 atctgcaacagngggagtagcatttactatccttcatattctggtaatacgccaagcaat 363
Query: 404 tccaagattacatttgcattagatcaaaatcaccagtcacatattgagtatcgttgggga 463
|||||| ||||| || | |||||| |||||| || ||||||||||||||||||||||||
Sbjct: 364 tccaaggttacacatgtaatagatcgaaatcatcaatcacatattgagtatcgttgggga 423
Query: 464 ggagaaggcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaaggga 523
|||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 424 ggagaaggtctaagaaagtatcttgtgaaatgggctacttcagtggtagaaagaaaggga 483
Query: 524 agaacagagagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgca 583
|||| || || || || ||||| |||||| |||| |||||||| | ||||| ||||||
Sbjct: 484 agaattgaaaggcagatgattttcgaagattcagaacactcttctacctattgncttgca 543
Query: 584 tttagagtggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgaga 643
|||| |||||| ||||| |||||||| ||||| | |||||||||||||| |||||||||
Sbjct: 544 tttaaagtggtcaatccaaatcatctgcctcccctgaaggagttgaggaaattgatgaga 603
Query: 644 atcca-atctctccgttgcaatgcattatataaccacagcgctaccagattatctgta 700
||||| || || ||||| ||||| | ||||||||||||||||||||| | ||||||
Sbjct: 604 atccaggtcgcttcgttgtaatgcgctgtataaccacagcgctaccagactgtctgta 661
>gb|BE437516.1|BE437516 SFR004.E11F990621 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 804
Score = 379 bits (191), Expect = e-104
Identities = 443/527 (84%)
Strand = Plus / Plus
Query: 203 atcagaaatgctattgaggtcatacataaagaaaacatgtcgggttcaactggttttgtg 262
||||||||||| ||||||| | ||||| |||||||| ||| || ||||||||| |||
Sbjct: 5 atcagaaatgcaattgaggccgcacatacagaaaacacaccggctttaactggtttcgtg 64
Query: 263 ctgtcaacttccttaacgatatcagaaatacattcactgctactatctggaggcatgctt 322
||||||||||| |||| |||||||| ||| |||||||||| |||||| |||||||| |
Sbjct: 65 ctgtcaacttcgctaacaatatcagagatatgttcactgctagtatctgtaggcatgcat 124
Query: 323 cccactgattttgatgctttcatctgcaatagtgggagtaacatttactatccttcacat 382
|| ||| ||||||||| ||||||||||| |||||||||| |||||||||||||||| ||
Sbjct: 125 cctgctggttttgatgccttcatctgcaacagtgggagtagcatttactatccttcatat 184
Query: 383 tccagagaaacgtcaaacaactccaagattacatttgcattagatcaaaatcaccagtca 442
|| | | ||| ||| ||| |||||| ||||| || | |||||| |||||| || |||
Sbjct: 185 tctggtaatacgccaagcaattccaaggttacacatgtaatagatcgaaatcatcaatca 244
Query: 443 catattgagtatcgttggggaggagaaggcctaaggaaatatcttgtgaagtgggccact 502
||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| |||
Sbjct: 245 catattgagtatcgttggggaggagaaggtctaagaaagtatcttgtgaaatgggctact 304
Query: 503 tcagtggtagaaagaaagggaagaacagagagacaaattatttttgaagatccagagcac 562
||||||||||||||||||||||||| || || || || ||||| |||||| |||| |||
Sbjct: 305 tcagtggtagaaagaaagggaagaattgaaaggcagatgattttcgaagattcagaacac 364
Query: 563 tcttcggcgtattgtcttgcatttagagtggttaatcccaatcatcttcctcctttaaag 622
||||| | |||||||||||||||| |||||| ||||| |||||||| ||||| | |||
Sbjct: 365 tcttctacctattgtcttgcatttaaagtggtcaatccaaatcatctgcctcccctgaag 424
Query: 623 gagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatataaccacagc 682
||||||||||| |||||||||||||| || || ||||| ||||| | ||||||||||||
Sbjct: 425 gagttgaggaaattgatgagaatccagtcgcttcgttgtaatgcgctgtataaccacagc 484
Query: 683 gctaccagattatctgtagtccctatccacgcatcacgctctcaggc 729
||||||||| | |||||| ||||| || || ||||| ||||||||
Sbjct: 485 gctaccagactgtctgtaactcctattcatgcgtcacgttctcaggc 531
>gb|AV931912.1|AV931912 AV931912 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26l03 3', mRNA sequence
Length = 653
Score = 260 bits (131), Expect = 6e-068
Identities = 263/307 (85%)
Strand = Plus / Minus
Query: 423 tagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaat 482
|||||| |||||| || |||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 637 tagatcgaaatcatcaatcacatattgagtatcgttggggaggagaaggtctaagaaagt 578
Query: 483 atcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatta 542
|||||||||| ||||| |||||||||||||||||||||||||||| || || || || |
Sbjct: 577 atcttgtgaaatgggctacttcagtggtagaaagaaagggaagaattgaaaggcagatga 518
Query: 543 tttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccca 602
|||| |||||| |||| |||||||| | |||||||||||||||| |||||| ||||| |
Sbjct: 517 ttttcgaagattcagaacactcttctacctattgtcttgcatttaaagtggtcaatccaa 458
Query: 603 atcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgca 662
||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| |
Sbjct: 457 atcatctgcctcccctgaaggagttgaggaaattgatgagaatccagtcgcttcgttgta 398
Query: 663 atgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgct 722
|||| | ||||||||||||||||||||| | |||||| ||||| || || ||||| |
Sbjct: 397 atgcgctgtataaccacagcgctaccagactgtctgtaactcctattcatgcgtcacgtt 338
Query: 723 ctcaggc 729
|||||||
Sbjct: 337 ctcaggc 331
>gb|AV914348.1|AV914348 AV914348 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5m14 5', mRNA sequence
Length = 475
Score = 206 bits (104), Expect = 7e-052
Identities = 227/268 (84%)
Strand = Plus / Plus
Query: 462 gaggagaaggcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagg 521
|||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 8 gaggagaaggtctaagaaagtatcttgtgaaatgggctacttcagtggtagaaagaaagg 67
Query: 522 gaagaacagagagacaaattatttttgaagatccagagcactcttcggcgtattgtcttg 581
|||||| || || || || ||||| |||||| |||| |||||||| | ||||||||||
Sbjct: 68 gaagaattgaaaggcagatgattttcgaagattcagaacactcttctacctattgtcttg 127
Query: 582 catttagagtggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatga 641
|||||| |||||| ||||| |||||||| ||||| | |||||||||||||| |||||||
Sbjct: 128 catttaaagtggtcaatccaaatcatctgcctcccctgaaggagttgaggaaattgatga 187
Query: 642 gaatccaatctctccgttgcaatgcattatataaccacagcgctaccagattatctgtag 701
||||||| || || ||||| ||||| | ||||||||||||||||||||| | ||||||
Sbjct: 188 gaatccagtcgcttcgttgtaatgcgctgtataaccacagcgctaccagactgtctgtaa 247
Query: 702 tccctatccacgcatcacgctctcaggc 729
||||| || || ||||| ||||||||
Sbjct: 248 ctcctattcatgcgtcacgttctcaggc 275
>gb|BU975604.1|BU975604 HB31K24r BC Hordeum vulgare subsp. vulgare cDNA clone HB31K24
5-PRIME, mRNA sequence
Length = 563
Score = 192 bits (97), Expect = 1e-047
Identities = 184/213 (86%)
Strand = Plus / Plus
Query: 1 cagagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaatta 60
|||||| |||||||| | ||||||||||||||| || ||||||||||||||||||||| |
Sbjct: 347 cagagaaaatggactaaaaaatattcaccaattttcctggcctgaacattgcaagaatca 406
Query: 61 cctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcg 120
||||||||||||| | |||||||| || ||||||||| | |||| || |||||| |
Sbjct: 407 cctgtcaaggatattgactcttggtatgagatctcctgctgtcggtagcaaagaggaaag 466
Query: 121 gagtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaa 180
|||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 467 gagtaaggcaccaatatcaggaaggaagcatatcattgttatttctgtagactctgttaa 526
Query: 181 caaggaaggtctagtcaggataatcagaaatgc 213
|||||| | |||||| |||| |||||||||||
Sbjct: 527 caaggaggatctagtgcggatcatcagaaatgc 559
>gb|BJ466481.1|BJ466481 BJ466481 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g04 3', mRNA sequence
Length = 688
Score = 168 bits (85), Expect = 2e-040
Identities = 265/325 (81%)
Strand = Plus / Minus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| |||||||||||||||||
Sbjct: 665 acatttgcattagaccgtaattaccagtctcatatcgagtaccgttggggaggagaaggt 606
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagag 532
|||| || ||||| ||||||||||| | || | |||||||||| ||||||||| ||
Sbjct: 605 ttaagaaagtatctagtgaagtgggcttcctcgatagtagaaagaaggggaagaactgaa 546
Query: 533 agacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtg 592
| |||| |||| ||||||||| |||| |||||||| | | ||| ||||| |||||||||
Sbjct: 545 aaacaagttatctttgaagatgcagaacactcttcaacatcttgccttgcgtttagagtg 486
Query: 593 gttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatct 652
|| ||||| ||| || | |||||||| |||||| || ||||||||||||||||| ||
Sbjct: 485 gtcaatccaaattatttacctcctttgaaggagctgcaaaagttgatgagaatccagtca 426
Query: 653 ctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatccac 712
|| || || |||| | ||||||||||| |||||||| |||||||| | || || ||
Sbjct: 425 ctacgctgtcatgctctttataaccacagtgctaccaggctatctgtaattccaattcat 366
Query: 713 gcatcacgctctcaggctctaaggt 737
||||||||||| |||||||||||||
Sbjct: 365 gcatcacgctcccaggctctaaggt 341
>gb|BU984860.1|BU984860 HF05E11r HF Hordeum vulgare subsp. vulgare cDNA clone HF05E11
5-PRIME, mRNA sequence
Length = 584
Score = 168 bits (85), Expect = 2e-040
Identities = 265/325 (81%)
Strand = Plus / Plus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| |||||||||||||||||
Sbjct: 64 acatttgcattagaccgtaattaccagtcccatatcgagtaccgttggggaggagaaggt 123
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagag 532
|||| || ||||| ||||||||||| | || | |||||||||| ||||||||| ||
Sbjct: 124 ttaagaaagtatctagtgaagtgggcttcctcgatagtagaaagaaggggaagaactgaa 183
Query: 533 agacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtg 592
| |||| |||| ||||||||| |||| ||||| || | | ||| ||||| |||||||||
Sbjct: 184 aaacaagttatctttgaagatgcagaacactcctcaacatcttgccttgcgtttagagtg 243
Query: 593 gttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatct 652
|| ||||| ||| || | |||||||| |||||| || |||||||||||||||||| ||
Sbjct: 244 gtcaatccaaattatttacctcctttgaaggagctgcagaagttgatgagaatccagtca 303
Query: 653 ctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatccac 712
|| || || |||| | ||||||||||| |||||||| |||||||| | || || ||
Sbjct: 304 ctacgctgtcatgctctttataaccacagtgctaccaggctatctgtaattccaattcat 363
Query: 713 gcatcacgctctcaggctctaaggt 737
||||||||||| |||||||||||||
Sbjct: 364 gcatcacgctcccaggctctaaggt 388
>gb|CD662445.1|CD662445 UCRHV18_01cb12_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01cb12, mRNA sequence
Length = 898
Score = 161 bits (81), Expect = 4e-038
Identities = 264/325 (81%)
Strand = Plus / Minus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| |||||||||||||||||
Sbjct: 736 acatttgcattagaccgtaattaccagtcccatatcgagtaccgttggggaggagaaggt 677
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagag 532
|||| || ||||| ||||||||||| | || | |||||||||| ||||||||| ||
Sbjct: 676 ttaagaaagtatctagtgaagtgggcttcctcgatagtagaaagaaggggaagaactgaa 617
Query: 533 agacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtg 592
| |||| |||| |||||||| |||| ||||| || | | ||| ||||| |||||||||
Sbjct: 616 aaacaagttatctttgaagacgcagaacactcctcaacatcttgccttgcgtttagagtg 557
Query: 593 gttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatct 652
|| ||||| ||| || | |||||||| |||||| || |||||||||||||||||| ||
Sbjct: 556 gtcaatccaaattatttacctcctttgaaggagctgcagaagttgatgagaatccagtca 497
Query: 653 ctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatccac 712
|| || || |||| | ||||||||||| |||||||| |||||||| | || || ||
Sbjct: 496 ctacgctgtcatgctctttataaccacagtgctaccaggctatctgtaattccaattcat 437
Query: 713 gcatcacgctctcaggctctaaggt 737
||||||||||| |||||||||||||
Sbjct: 436 gcatcacgctcccaggctctaaggt 412
Score = 79.8 bits (40), Expect = 1e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 254 ggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgctactatctgga 313
||||||||| |||| ||| |||| || || ||||| |||||||| || || |||||| |
Sbjct: 895 ggttttgtgttgtcgactcccttgacaatgtcagagatacattccctattaatatctgca 836
Query: 314 ggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
|||||| ||| || ||||||||||||||||| |||||||||||||||
Sbjct: 835 ggcatggctcctacagattttgatgctttcatatgcaatagtgggagt 788
>gb|AV917170.1|AV917170 AV917170 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8c04 5', mRNA sequence
Length = 630
Score = 157 bits (79), Expect = 6e-037
Identities = 208/249 (83%), Gaps = 2/249 (0%)
Strand = Plus / Plus
Query: 483 atcttgtgaagtgggccacttcagtggtagaaagaaagggaag-aacagagagaca-aat 540
|||||||||| ||||| ||||||||||||||||| |||||||| || || || || ||
Sbjct: 1 atcttgtgaaatgggctacttcagtggtagaaagnaagggaagnaattgaaaggcagnat 60
Query: 541 tatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatcc 600
||||| |||||| |||| |||||||| | |||||||||||||||| |||||| |||||
Sbjct: 61 gattttcgaagattcagaacactcttctacctattgtcttgcatttaaagtggtcaatcc 120
Query: 601 caatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttg 660
|||||||| ||||| | |||||||||||||| |||||||||||||| || || |||||
Sbjct: 121 aaatcatctgcctcccctgaaggagttgaggaaattgatgagaatccagtcgcttcgttg 180
Query: 661 caatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacg 720
||||| | ||||||||||||||||||||| | |||||| ||||| || || |||||
Sbjct: 181 taatgcgctgtataaccacagcgctaccagactgtctgtaactcctattcatgcgtcacg 240
Query: 721 ctctcaggc 729
||||||||
Sbjct: 241 ttctcaggc 249
>gb|CA022248.1|CA022248 HZ42J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42J07
5-PRIME, mRNA sequence
Length = 594
Score = 121 bits (61), Expect = 3e-026
Identities = 187/229 (81%)
Strand = Plus / Plus
Query: 509 gtagaaagaaagggaagaacagagagacaaattatttttgaagatccagagcactcttcg 568
|||||||||| ||||||||| || | |||| |||| ||||||||| |||| ||||| ||
Sbjct: 42 gtagaaagaaggggaagaactgaaaaacaagttatctttgaagatgcagaacactcctca 101
Query: 569 gcgtattgtcttgcatttagagtggttaatcccaatcatcttcctcctttaaaggagttg 628
| | ||| ||||| ||||||||||| ||||| ||| || | |||||||| |||||| ||
Sbjct: 102 acatcttgccttgcgtttagagtggtcaatccaaattatttacctcctttgaaggagctg 161
Query: 629 aggaagttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgctacc 688
|||||||||||||||||| || || || || |||| | ||||||||||| ||||||
Sbjct: 162 cagaagttgatgagaatccagtcactacgctgtcatgctctttataaccacagtgctacc 221
Query: 689 agattatctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|| |||||||| | || || || ||||||||||| |||||||||||||
Sbjct: 222 aggctatctgtaattccaattcatgcatcacgctcccaggctctaaggt 270
>gb|BE193243.1|BE193243 HVSMEh0080E17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080E17f, mRNA sequence
Length = 689
Score = 103 bits (52), Expect = 8e-021
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 226 acataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatc 285
||||||||||| |||| |||||||| ||||||||| |||| |||||||| || || ||
Sbjct: 207 acataaagaaacgttgtcaggttcaacaggttttgtgttgtcgacttccttgacaatgtc 266
Query: 286 agaaatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcat 345
||| |||||||| || || |||||| ||||||| ||| || |||||||||||||||||
Sbjct: 267 agagatacattccctattaatatctgcaggcatggctcctacagattttgatgctttcat 326
Query: 346 ctgcaatagtgggagt 361
|||||||||||||||
Sbjct: 327 atgcaatagtgggagt 342
Score = 73.8 bits (37), Expect = 7e-012
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 38 tggcctgaacattgcaagaattacctgtcaaggatactaactcttggcccaag 90
|||||||||||||||||||||||| |||| |||||| |||||||| |||||||
Sbjct: 19 tggcctgaacattgcaagaattacttgtcgaggatattaactcttagcccaag 71
Score = 63.9 bits (32), Expect = 7e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| | ||||||||||||||
Sbjct: 394 acatttgcattagaccgtaattaccagtcccatatcgagtacccgtggggaggagaaggt 453
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaac 528
|||| || ||||| ||||||||||| | || | ||| ||||||||||||||||
Sbjct: 454 gtaagaaagtatctagtgaagtgggcttcctcgatagtaaaaagaaagggaagaac 509
>gb|BG310233.1|BG310233 HVSMEc0016J09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016J09f, mRNA sequence
Length = 818
Score = 103 bits (52), Expect = 8e-021
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 226 acataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatc 285
||||||||||| |||| |||||||| ||||||||| |||| |||||||| || || ||
Sbjct: 248 acataaagaaacgttgtcaggttcaacaggttttgtgttgtcgacttccttgacaatgtc 307
Query: 286 agaaatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcat 345
||| |||||||| || || |||||| ||||||| ||| || |||||||||||||||||
Sbjct: 308 agagatacattccctattaatatctgcaggcatggctcctacagattttgatgctttcat 367
Query: 346 ctgcaatagtgggagt 361
|||||||||||||||
Sbjct: 368 atgcaatagtgggagt 383
Score = 89.7 bits (45), Expect = 1e-016
Identities = 191/237 (80%), Gaps = 2/237 (0%)
Strand = Plus / Plus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| |||||||||||||||||
Sbjct: 435 acatttgcattagaccgtaattaccagtcccatatcgagtaccgttggggaggagaaggt 494
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagag 532
|||| || ||||| |||||||||| | | || | |||||||||| ||||||||| ||
Sbjct: 495 ttaagaaagtatctagtgaagtgggactcctcgatagtagaaagaaggggaagaactgaa 554
Query: 533 agacaaattatttttgaagatccag-agcactcttcggcgtattgtcttgcatttagagt 591
| |||| |||| |||||||| ||| | ||| | || | | ||| ||||| ||||||||
Sbjct: 555 aaacaagttatctttgaagacgcagaaacacgcctcaacatcttgccttgcgtttagagt 614
Query: 592 ggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatcca 648
||| ||| ||||| || | |||||||| |||||| || ||||||||||| ||||||
Sbjct: 615 ggtcaat-ccaattatttacctcctttgaaggagctgcagaagttgatgaaaatcca 670
Score = 81.8 bits (41), Expect = 3e-014
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||| ||||| |||| |||||| |||| || || ||||||||||||||||||||||||
Sbjct: 24 agagaaaatgggctgaaaaatatacaccggttttcttggcctgaacattgcaagaattac 83
Query: 62 ctgtcaaggatactaactcttggcccaag 90
|||| |||||| |||||||| |||||||
Sbjct: 84 ttgtcgaggatattaactcttagcccaag 112
>gb|BQ472479.1|BQ472479 HB09H08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09H08
5-PRIME, mRNA sequence
Length = 642
Score = 103 bits (52), Expect = 8e-021
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 226 acataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatc 285
||||||||||| |||| |||||||| ||||||||| |||| |||||||| || || ||
Sbjct: 313 acataaagaaacgttgtcaggttcaacaggttttgtgttgtcgacttccttgacaatgtc 372
Query: 286 agaaatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcat 345
||| |||||||| || || |||||| ||||||| ||| || |||||||||||||||||
Sbjct: 373 agagatacattccctattaatatctgcaggcatggctcctacagattttgatgctttcat 432
Query: 346 ctgcaatagtgggagt 361
|||||||||||||||
Sbjct: 433 atgcaatagtgggagt 448
Score = 89.7 bits (45), Expect = 1e-016
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 413 acatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggc 472
|||||||||||||| | ||| ||||||| ||||| ||||| |||||||||||||||||
Sbjct: 500 acatttgcattagaccgtaattaccagtcccatatcgagtaccgttggggaggagaaggt 559
Query: 473 ctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagag 532
|||| || ||||| ||||||||||| | || | |||||||||| ||||||||| ||
Sbjct: 560 ttaagaaagtatctagtgaagtgggcttcctcgatagtagaaagaaggggaagaactgaa 619
Query: 533 agacaaattatttttgaagat 553
| |||| |||| |||||||||
Sbjct: 620 aaacaagttatctttgaagat 640
Score = 81.8 bits (41), Expect = 3e-014
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||| ||||| |||| |||||| |||| || || ||||||||||||||||||||||||
Sbjct: 89 agagaaaatgggctgaaaaatatacaccggttttcttggcctgaacattgcaagaattac 148
Query: 62 ctgtcaaggatactaactcttggcccaag 90
|||| |||||| |||||||| |||||||
Sbjct: 149 ttgtcgaggatattaactcttagcccaag 177
>gb|BU968420.1|BU968420 HB07H08r BC Hordeum vulgare subsp. vulgare cDNA clone HB07H08
5-PRIME, mRNA sequence
Length = 533
Score = 103 bits (52), Expect = 8e-021
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 226 acataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatc 285
||||||||||| |||| |||||||| ||||||||| |||| |||||||| || || ||
Sbjct: 312 acataaagaaacgttgtcaggttcaacaggttttgtgttgtcgacttccttgacaatgtc 371
Query: 286 agaaatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcat 345
||| |||||||| || || |||||| ||||||| ||| || |||||||||||||||||
Sbjct: 372 agagatacattccctattaatatctgcaggcatggctcctacagattttgatgctttcat 431
Query: 346 ctgcaatagtgggagt 361
|||||||||||||||
Sbjct: 432 atgcaatagtgggagt 447
Score = 73.8 bits (37), Expect = 7e-012
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 38 tggcctgaacattgcaagaattacctgtcaaggatactaactcttggcccaag 90
|||||||||||||||||||||||| |||| |||||| |||||||| |||||||
Sbjct: 124 tggcctgaacattgcaagaattacttgtcgaggatattaactcttagcccaag 176
>gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A025 5-PRIME, mRNA sequence
Length = 759
Score = 81.8 bits (41), Expect = 3e-014
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||| ||||| |||| |||||| |||| || || ||||||||||||||||||||||||
Sbjct: 406 agagaaaatgggctgaaaaatatacaccggttttcttggcctgaacattgcaagaattac 465
Query: 62 ctgtcaaggatactaactcttggcccaag 90
|||| |||||| |||||||| |||||||
Sbjct: 466 ttgtcgaggatattaactcttagcccaag 494
Score = 44.1 bits (22), Expect = 0.006
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 226 acataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttcc 274
||||||||||| |||| |||||||| ||||||||| |||| ||||||
Sbjct: 631 acataaagaaacgttgtcaggttcaacaggttttgtgntgtcgacttcc 679
>gb|CA011510.1|CA011510 HT05E02u HT Hordeum vulgare subsp. vulgare cDNA clone HT05E02
3-PRIME, mRNA sequence
Length = 493
Score = 69.9 bits (35), Expect = 1e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 631 gaagttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgctaccag 690
|||||||||||||||||| || || || || |||| | ||||||||||| ||||||||
Sbjct: 482 gaagttgatgagaatccagtcactacgctgtcatgctctttataaccacagtgctaccag 423
Query: 691 attatctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||||||| | || || || ||||||||||| |||||||||||||
Sbjct: 422 gctatctgtaattccaattcatgcatcacgctcccaggctctaaggt 376
>gb|AV833883.1|AV833883 AV833883 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags18o22, mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.002
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 6 agaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacctgt 65
||||||| ||| |||||| || | ||| || |||||||||||||||||||| || ||||
Sbjct: 14 agaatggnctggaaaatatccatcgattttcttggcctgaacattgcaagaactatctgt 73
Query: 66 ca 67
||
Sbjct: 74 ca 75
>gb|BU985379.1|BU985379 HF06P13r HF Hordeum vulgare subsp. vulgare cDNA clone HF06P13
5-PRIME, mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 38 tggcctgaacattgcaagaattacctgtca 67
|||||||||||||||||||| || ||||||
Sbjct: 239 tggcctgaacattgcaagaactatctgtca 268
>gb|BU985680.1|BU985680 HF08E20r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E20
5-PRIME, mRNA sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 38 tggcctgaacattgcaagaattacctgtca 67
|||||||||||||||||||| || ||||||
Sbjct: 116 tggcctgaacattgcaagaactatctgtca 145
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,694
Number of Sequences: 312970
Number of extensions: 58694
Number of successful extensions: 17143
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17085
Number of HSP's gapped (non-prelim): 41
length of query: 737
length of database: 175,134,539
effective HSP length: 19
effective length of query: 718
effective length of database: 169,188,109
effective search space: 121477062262
effective search space used: 121477062262
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)