BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgar... 541 e-152
gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgar... 541 e-152
gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA li... 517 e-145
gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulg... 496 e-139
gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA li... 490 e-137
gb|BU986190.1|BU986190 HF09P03r HF Hordeum vulgare subsp. v... 480 e-134
gb|BU985696.1|BU985696 HF08F13r HF Hordeum vulgare subsp. v... 472 e-131
gb|BJ465465.1|BJ465465 BJ465465 K. Sato unpublished cDNA li... 464 e-129
gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-a... 444 e-123
gb|BI947435.1|BI947435 HVSMEl0005H16f Hordeum vulgare spike... 434 e-120
gb|AV913792.1|AV913792 AV913792 K. Sato unpublished cDNA li... 428 e-118
gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. v... 418 e-115
gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA li... 385 e-105
gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA li... 383 e-105
gb|BU985151.1|BU985151 HF06E15r HF Hordeum vulgare subsp. v... 369 e-100
gb|BU976042.1|BU976042 HA03A17r HA Hordeum vulgare subsp. v... 367 e-100
gb|BU984967.1|BU984967 HF05L05r HF Hordeum vulgare subsp. v... 367 e-100
gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. v... 353 8e-096
gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-a... 351 3e-095
gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA li... 343 8e-093
gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-a... 341 3e-092
gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA li... 325 2e-087
gb|CK122663.1|CK122663 BES1824104p09 BES1824 Hordeum vulgar... 307 4e-082
gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. v... 299 1e-079
gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. v... 299 1e-079
gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no... 291 3e-077
gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. v... 285 2e-075
gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no... 274 6e-072
gb|AV916719.1|AV916719 AV916719 K. Sato unpublished cDNA li... 262 2e-068
gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm librar... 262 2e-068
gb|CA030138.1|CA030138 HX06D05r HX Hordeum vulgare subsp. v... 242 2e-062
gb|CA030860.1|CA030860 HX08F13r HX Hordeum vulgare subsp. v... 242 2e-062
gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA li... 232 2e-059
gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA li... 232 2e-059
gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA li... 218 3e-055
gb|AV914472.1|AV914472 AV914472 K. Sato unpublished cDNA li... 194 4e-048
gb|CA014563.1|CA014563 HT11L04r HT Hordeum vulgare subsp. v... 190 7e-047
gb|CA025335.1|CA025335 HZ51N09r HZ Hordeum vulgare subsp. v... 186 1e-045
gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subs... 182 2e-044
gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA li... 182 2e-044
gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. v... 182 2e-044
gb|CA014289.1|CA014289 HT10P01r HT Hordeum vulgare subsp. v... 178 3e-043
gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA li... 176 1e-042
gb|BJ465210.1|BJ465210 BJ465210 K. Sato unpublished cDNA li... 161 6e-038
gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. v... 161 6e-038
gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA li... 159 2e-037
gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. v... 159 2e-037
gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. v... 159 2e-037
gb|BQ468025.1|BQ468025 HR01L03r HR Hordeum vulgare subsp. v... 155 4e-036
gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthe... 155 4e-036
gb|CB874745.1|CB874745 HX06D05w HX Hordeum vulgare subsp. v... 155 4e-036
gb|BJ476688.1|BJ476688 BJ476688 K. Sato unpublished cDNA li... 153 2e-035
gb|CA006166.1|CA006166 HU05B18u HU Hordeum vulgare subsp. v... 149 2e-034
gb|CA021799.1|CA021799 HZ41C13r HZ Hordeum vulgare subsp. v... 149 2e-034
gb|AV919525.1|AV919525 AV919525 K. Sato unpublished cDNA li... 147 9e-034
gb|BM442721.2|BM442721 EBan01_SQ003_P13_R anther, yellow st... 147 9e-034
gb|CB875451.1|CB875451 HX08F13w HX Hordeum vulgare subsp. v... 147 9e-034
gb|BQ758109.1|BQ758109 EBma01_SQ001_P04_R maternal, 4 DPA, ... 145 4e-033
gb|AV922011.1|AV922011 AV922011 K. Sato unpublished cDNA li... 143 1e-032
gb|CA010273.1|CA010273 HT10P01u HT Hordeum vulgare subsp. v... 129 2e-028
gb|BI777912.2|BI777912 EBro07_SQ001_E04_R root, 3 week, red... 119 2e-025
gb|CA010063.1|CA010063 HT11L04u HT Hordeum vulgare subsp. v... 117 8e-025
gb|CK123791.1|CK123791 BES1824105f24 BES1824 Hordeum vulgar... 115 3e-024
gb|CA013973.1|CA013973 HT10A07r HT Hordeum vulgare subsp. v... 103 1e-020
gb|BI777816.2|BI777816 EBro08_SQ002_D01_R root, 3 week, dro... 98 8e-019
gb|CB859612.1|CB859612 HI11A04w HI Hordeum vulgare subsp. v... 98 8e-019
gb|BQ468560.1|BQ468560 HM01J16T HM Hordeum vulgare subsp. v... 94 1e-017
gb|BQ761897.1|BQ761897 EBpi01_SQ005_O05_R pistil, 1 DPA, no... 94 1e-017
gb|BQ762687.1|BQ762687 EBro02_SQ004_B20_R root, 3 week, hyd... 94 1e-017
gb|BQ762688.1|BQ762688 EBro02_SQ004_B21_R root, 3 week, hyd... 94 1e-017
gb|AV833845.1|AV833845 AV833845 K. Sato unpublished cDNA li... 74 1e-011
gb|BI948007.1|BI948007 HVSMEl0007M23f Hordeum vulgare spike... 72 4e-011
gb|BJ465830.1|BJ465830 BJ465830 K. Sato unpublished cDNA li... 68 7e-010
gb|BQ458960.1|BQ458960 HA02L12r HA Hordeum vulgare subsp. v... 54 1e-005
gb|BQ656648.1|BQ656648 HA02L12u HA Hordeum vulgare subsp. v... 54 1e-005
gb|BU976195.1|BU976195 HA03F01r HA Hordeum vulgare subsp. v... 54 1e-005
gb|BU976196.1|BU976196 HA03F01u HA Hordeum vulgare subsp. v... 54 1e-005
gb|BQ465474.1|BQ465474 HU03M01r HU Hordeum vulgare subsp. v... 44 0.010
>gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J245 5-PRIME, mRNA sequence
Length = 793
Score = 541 bits (273), Expect = e-152
Identities = 615/729 (84%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 729 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 670
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 669 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 610
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 609 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 550
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 549 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 490
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 489 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 430
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 429 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 370
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 369 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 310
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 309 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 250
Query: 790 tgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 849
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 249 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 190
Query: 850 gaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttg 909
||| | ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 189 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 130
Query: 910 ttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggtt 969
||||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| ||
Sbjct: 129 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 70
Query: 970 ccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggt 1029
||| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |
Sbjct: 69 ccggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagtt 10
Query: 1030 cttagcaag 1038
|||||||||
Sbjct: 9 cttagcaag 1
>gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B085 5-PRIME, mRNA sequence
Length = 744
Score = 541 bits (273), Expect = e-152
Identities = 615/729 (84%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 729 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 670
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 669 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 610
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 609 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 550
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 549 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 490
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 489 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 430
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 429 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 370
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 369 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 310
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 309 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 250
Query: 790 tgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 849
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 249 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 190
Query: 850 gaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttg 909
||| | ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 189 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 130
Query: 910 ttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggtt 969
||||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| ||
Sbjct: 129 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 70
Query: 970 ccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggt 1029
||| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |
Sbjct: 69 ccggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagtt 10
Query: 1030 cttagcaag 1038
|||||||||
Sbjct: 9 cttagcaag 1
>gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak37e05 5', mRNA sequence
Length = 617
Score = 517 bits (261), Expect = e-145
Identities = 495/573 (86%)
Strand = Plus / Minus
Query: 563 ccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatg 622
|||||||||||||||||||| || |||||| |||| | |||||||| || ||||||||
Sbjct: 592 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 533
Query: 623 gccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtg 682
||||| |||||||| ||||| || || |||| |||||| |||||||| |||||||| | |
Sbjct: 532 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 473
Query: 683 aaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcct 742
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 472 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 413
Query: 743 aacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttg 802
| |||||| ||||| ||||| ||||||||||| ||||||| |||||| ||||| ||| ||
Sbjct: 412 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 353
Query: 803 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 862
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 352 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 293
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 292 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 233
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 232 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 173
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||||||| | ||||| ||| |||||||||| |||
Sbjct: 172 agagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagcaagtttg 113
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| |||||||||||||| |||||||| | || ||||||||||||||||||||||
Sbjct: 112 gccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatcagcacgaagt 53
Query: 1103 tctcttcccctctccacagccttatcacagtcc 1135
|| ||||||||||||||||| ||||||||||||
Sbjct: 52 tcccttcccctctccacagctttatcacagtcc 20
>gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F0111 5-PRIME, mRNA sequence
Length = 877
Score = 496 bits (250), Expect = e-139
Identities = 571/678 (84%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 693 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 634
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 633 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 574
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 573 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 514
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 513 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 454
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 453 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 394
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 393 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 334
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 333 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 274
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 273 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 214
Query: 790 tgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 849
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 213 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 154
Query: 850 gaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttg 909
||| | ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 153 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 94
Query: 910 ttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggtt 969
||||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| ||
Sbjct: 93 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 34
Query: 970 ccgatgctcagttagagc 987
||| ||||||||||||||
Sbjct: 33 ccggtgctcagttagagc 16
>gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 5', mRNA sequence
Length = 625
Score = 490 bits (247), Expect = e-137
Identities = 524/615 (85%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 497 tgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctc 556
||||| || ||||||||||| ||||| |||||||||||||| || || | || ||||||
Sbjct: 623 tgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacctc 564
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
|| | |||||||||||||||||||| || |||||| |||| | |||||||| || |||
Sbjct: 563 cttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtt 504
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| ||||||
Sbjct: 503 tccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtataccct 444
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatg 736
|| | |||||| |||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct: 443 ttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatg 384
Query: 737 gctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggttt 796
||||| | |||||| ||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 383 gctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttc 324
Query: 797 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 856
||| ||| |||||| |||| || |||||||||||||| || || |||| |||||| | |
Sbjct: 323 ctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatc 264
Query: 857 tcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctcc 916
|| || |||||||| ||||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct: 263 tcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgctcc 204
Query: 917 aactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgc 976
|| ||||| || || ||||||||||||| ||| |||||||||||||||| ||||| |||
Sbjct: 203 aaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgc 144
Query: 977 tcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagca 1036
|||||||||||||||||| | ||||| |||||||||||| | ||||| ||| ||||||||
Sbjct: 143 tcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagca 84
Query: 1037 agcttgactagagctgttccttttcttgtcagtgcccttgaaatcat-cttgaaatcagc 1095
|| ||| | ||||| |||||||||||||| |||||||| | || ||| ||||||||||||
Sbjct: 83 agtttggccagagcagttccttttcttgttagtgccctagcaaccatncttgaaatcagc 24
Query: 1096 acgaagttctcttcc 1110
||||||||| |||||
Sbjct: 23 acgaagttcccttcc 9
>gb|BU986190.1|BU986190 HF09P03r HF Hordeum vulgare subsp. vulgare cDNA clone HF09P03
5-PRIME, mRNA sequence
Length = 580
Score = 480 bits (242), Expect = e-134
Identities = 452/522 (86%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| |||
Sbjct: 575 gtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtatac 516
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 515 cctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggc 456
Query: 734 atggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttggg 793
|||||||| | |||||| ||||| ||||| ||||||||||| ||||||| |||||| |||
Sbjct: 455 atggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcggg 396
Query: 794 tttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaag 853
|| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||||
Sbjct: 395 ttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaac 336
Query: 854 aactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgc 913
| ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 335 atctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgc 276
Query: 914 tccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccga 973
||||| ||||| || || ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 275 tccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccgg 216
Query: 974 tgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtctta 1033
||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |||||
Sbjct: 215 tgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttctta 156
Query: 1034 gcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatca 1093
||||| ||| | ||||| |||||||||||||| |||||||| | || |||||||||||||
Sbjct: 155 gcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatca 96
Query: 1094 gcacgaagttctcttcccctctccacagccttatcacagtcc 1135
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 95 gcacgaagttcccttcccctctccacagctttatcacagtcc 54
>gb|BU985696.1|BU985696 HF08F13r HF Hordeum vulgare subsp. vulgare cDNA clone HF08F13
5-PRIME, mRNA sequence
Length = 555
Score = 472 bits (238), Expect = e-131
Identities = 466/542 (85%)
Strand = Plus / Minus
Query: 563 ccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatg 622
|||||||||||||||||||| || |||||| |||| | |||||||| || ||||||||
Sbjct: 554 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 495
Query: 623 gccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtg 682
||||| |||||||| ||||| || || |||| |||||| |||||||| |||||||| | |
Sbjct: 494 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 435
Query: 683 aaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcct 742
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 434 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 375
Query: 743 aacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttg 802
| |||||| ||||| ||||| ||||||||||| ||||||| |||||| ||||| ||| ||
Sbjct: 374 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 315
Query: 803 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 862
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 314 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 255
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 254 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 195
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 194 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 135
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||||||| | ||||| ||| |||||||||| |||
Sbjct: 134 agagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagcaagtttg 75
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| |||||||||||||| |||||||| | || ||||||||||||||||||||||
Sbjct: 74 gccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatcagcacgaagt 15
Query: 1103 tc 1104
||
Sbjct: 14 tc 13
>gb|BJ465465.1|BJ465465 BJ465465 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39p01 5', mRNA sequence
Length = 579
Score = 464 bits (234), Expect = e-129
Identities = 472/550 (85%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 563 ccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatg 622
|||||||||||||||||||| || |||||| |||| | |||||||| || ||||||||
Sbjct: 574 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 515
Query: 623 gccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtg 682
||||| |||||||| ||||| || || |||| |||||| |||||||| |||||||| | |
Sbjct: 514 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 455
Query: 683 aaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcct 742
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 454 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 395
Query: 743 aacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttg 802
| |||||| ||||| ||||| ||||||||||| ||||||| |||||| ||||| ||| ||
Sbjct: 394 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 335
Query: 803 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 862
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 334 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 275
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 274 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 215
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 214 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 155
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||||||| | ||||| ||| |||||||||| |||
Sbjct: 154 agagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagcaagtttg 95
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| |||||||||||||| |||||||| | || |||| |||||||||||||||||
Sbjct: 94 gccagagcagttccttttcttgttagtgccctagcaaccatc-tgaaatcagcacgaagt 36
Query: 1103 tctcttcccc 1112
|| |||||||
Sbjct: 35 tcccttcccc 26
>gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017E08f, mRNA sequence
Length = 908
Score = 444 bits (224), Expect = e-123
Identities = 529/628 (84%), Gaps = 2/628 (0%)
Strand = Plus / Minus
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||||||||| ||| |||| |||||||| || |||||||| |||| |||||| ||||| |
Sbjct: 626 catgataggatcg-taagcatgttctg-atttctgggtcctgcaaagctttactctgttt 569
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| ||||| || ||||||||||| ||||| |||| |||||||| || || | || ||
Sbjct: 568 ctcctgcaaatcctcctgacttatgtcacccttgttggccttgttgatctgctgaacaca 509
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||||| | |||||||||||||||||||| || |||||| |||| | |||||||| ||
Sbjct: 508 cctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggta 449
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgta 672
|||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| ||
Sbjct: 448 agtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtata 389
Query: 673 ccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcagg 732
|||||| | |||||| |||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 388 ccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcagg 329
Query: 733 catggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgg 792
||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| |||||| ||
Sbjct: 328 catggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcgg 269
Query: 793 gtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaa 852
||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||||
Sbjct: 268 gttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaa 209
Query: 853 gaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttg 912
| ||| || |||||||| ||||||||||| |||| ||||| ||||| |||||||||||
Sbjct: 208 catctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttg 149
Query: 913 ctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccg 972
|||||| ||||| || || ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 148 ctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccg 89
Query: 973 atgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtctt 1032
||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| ||||
Sbjct: 88 gtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttctt 29
Query: 1033 agcaagcttgactagagctgttcctttt 1060
|||||| ||| | ||||| |||||||||
Sbjct: 28 agcaagtttggccagagcagttcctttt 1
>gb|BI947435.1|BI947435 HVSMEl0005H16f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0005H16f, mRNA sequence
Length = 498
Score = 434 bits (219), Expect = e-120
Identities = 423/491 (86%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
|||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| |||
Sbjct: 495 gtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtatac 436
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 435 cctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggc 376
Query: 734 atggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttggg 793
|||||||| | |||||| ||||| ||||| ||||||||||| ||||||| |||||| |||
Sbjct: 375 atggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcggg 316
Query: 794 tttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaag 853
|| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||||
Sbjct: 315 ttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaac 256
Query: 854 aactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgc 913
| ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct: 255 atctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgc 196
Query: 914 tccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccga 973
||||| ||||| || || ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 195 tccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccgg 136
Query: 974 tgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtctta 1033
||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |||||
Sbjct: 135 tgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttctta 76
Query: 1034 gcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatca 1093
||||| ||| | ||||| |||||||||||||| |||||||| | || |||||||||||||
Sbjct: 75 gcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatca 16
Query: 1094 gcacgaagttc 1104
|||||||||||
Sbjct: 15 gcacgaagttc 5
>gb|AV913792.1|AV913792 AV913792 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f01 5', mRNA sequence
Length = 519
Score = 428 bits (216), Expect = e-118
Identities = 437/511 (85%)
Strand = Plus / Minus
Query: 563 ccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatg 622
|||||||||||||||||||| || |||||| |||| | |||||||| || ||||||||
Sbjct: 516 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 457
Query: 623 gccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctttagtg 682
||||| |||||||| ||||| || || |||| |||||| |||||||| |||||||| | |
Sbjct: 456 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 397
Query: 683 aaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcct 742
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 396 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 337
Query: 743 aacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttg 802
| |||||| ||||| ||||| ||||||||||| ||||||| |||||| ||||| ||| ||
Sbjct: 336 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 277
Query: 803 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 862
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 276 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 217
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 216 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 157
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 156 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 97
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||||||| | ||||| ||| |||||||||| |||
Sbjct: 96 agagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagcaagtttg 37
Query: 1043 actagagctgttccttttcttgtcagtgccc 1073
| ||||| |||||||| ||||| |||||||
Sbjct: 36 gccagagcagttcctttncttgttagtgccc 6
>gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44H15
5-PRIME, mRNA sequence
Length = 536
Score = 418 bits (211), Expect = e-115
Identities = 442/519 (85%)
Strand = Plus / Minus
Query: 497 tgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctc 556
||||| || ||||||||||| ||||| |||||||||||||| || || | || ||||||
Sbjct: 534 tgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacctc 475
Query: 557 ctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtt 616
|| | |||||||||||||||||||| || |||||| |||| | |||||||| || |||
Sbjct: 474 cttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtt 415
Query: 617 tccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccct 676
||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| ||||||
Sbjct: 414 tccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtataccct 355
Query: 677 ttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatg 736
|| | |||||| |||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct: 354 ttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatg 295
Query: 737 gctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggttt 796
||||| | |||||| ||||| ||||| ||||||||||| ||||||| |||||| |||||
Sbjct: 294 gctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttc 235
Query: 797 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 856
||| ||| |||||| |||| || |||||||||||||| || || |||| |||||| | |
Sbjct: 234 ctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatc 175
Query: 857 tcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctcc 916
|| || |||||||| ||||||||||| |||| ||||| ||||| |||||||||||||||
Sbjct: 174 tcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgctcc 115
Query: 917 aactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgc 976
|| ||||| || || ||||||||||||| ||| |||||||||||||||| ||||| |||
Sbjct: 114 aaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgc 55
Query: 977 tcagttagagccttctggtaggtctcgatggcaatatca 1015
|||||||||||||||||| | ||||| ||||||||||||
Sbjct: 54 tcagttagagccttctggaaagtctcaatggcaatatca 16
>gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 5', mRNA sequence
Length = 508
Score = 385 bits (194), Expect = e-105
Identities = 419/494 (84%)
Strand = Plus / Minus
Query: 424 cacctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagcttt 483
|||||||| ||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 494 cacctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagcttt 435
Query: 484 gttctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttg 543
||||| | || ||||| || ||||||||||| ||||| |||||||||||||| || ||
Sbjct: 434 actctgtttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctg 375
Query: 544 ttcaatgcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggcc 603
| || |||||||| | |||||||||||||||||||| || |||||| |||| | ||
Sbjct: 374 ctgaacacacctccttatgccatcaagcagttcctggttattagggtcaagctttaaccc 315
Query: 604 agcctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcaccttt 663
|||||| || |||||||| ||||| |||||||| ||||| || || |||| |||||| ||
Sbjct: 314 agcctggtaagtttccattgccttctcatattccttcataaaaaactgaactgcaccctt 255
Query: 664 ccttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaag 723
|||||| |||||||| | |||||| |||||||| |||| |||||||||||| ||||||||
Sbjct: 254 ccttgtataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaag 195
Query: 724 accttcaggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctagg 783
|||||||||||||||||| | |||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 194 accttcaggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagc 135
Query: 784 atcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttg 843
|||||| ||||| ||| ||| |||||| |||| || |||||||||||||| || || ||
Sbjct: 134 atccttcgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctg 75
Query: 844 ctccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagta 903
|| |||||| | ||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 74 ctgcttgaacatctcattacctttctccctctcctcatcagctatctttgggtcataata 15
Query: 904 ctcttgttgctcca 917
||||||||||||||
Sbjct: 14 ctcttgttgctcca 1
>gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f01 3', mRNA sequence
Length = 663
Score = 383 bits (193), Expect = e-105
Identities = 469/561 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 100 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 159
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 160 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 219
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 220 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 279
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 280 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 339
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 340 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 399
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 400 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 459
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 460 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 519
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 520 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 579
Query: 790 tgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 849
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 580 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 639
Query: 850 gaagaactcgttgcctttctc 870
||| | ||| || ||||||||
Sbjct: 640 gaacatctcattacctttctc 660
>gb|BU985151.1|BU985151 HF06E15r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E15
5-PRIME, mRNA sequence
Length = 628
Score = 369 bits (186), Expect = e-100
Identities = 351/406 (86%)
Strand = Plus / Minus
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 628 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 569
Query: 790 tgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 849
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 568 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 509
Query: 850 gaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttg 909
||| | ||| || |||||||| ||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 508 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 449
Query: 910 ttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggtt 969
||||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| ||
Sbjct: 448 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 389
Query: 970 ccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggt 1029
||| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |
Sbjct: 388 ccggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagtt 329
Query: 1030 cttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaa 1089
||||||||| ||| | ||||| |||||||||||||| |||||||| | || |||||||||
Sbjct: 328 cttagcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaa 269
Query: 1090 atcagcacgaagttctcttcccctctccacagccttatcacagtcc 1135
||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 268 atcagcacgaagttcccttcccctctccacagctttatcacagtcc 223
>gb|BU976042.1|BU976042 HA03A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA03A17
5-PRIME, mRNA sequence
Length = 558
Score = 367 bits (185), Expect = e-100
Identities = 350/405 (86%)
Strand = Plus / Minus
Query: 731 ggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatccttt 790
||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 558 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 499
Query: 791 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 850
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 498 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 439
Query: 851 aagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgt 910
|| | ||| || |||||||| ||||||||||| |||| ||||| ||||| |||||||||
Sbjct: 438 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 379
Query: 911 tgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttc 970
|||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| |||
Sbjct: 378 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 319
Query: 971 cgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtc 1030
|| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| ||
Sbjct: 318 cggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttc 259
Query: 1031 ttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaa 1090
|||||||| ||| | ||||| |||||||||||||| |||||||| | || ||||||||||
Sbjct: 258 ttagcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaa 199
Query: 1091 tcagcacgaagttctcttcccctctccacagccttatcacagtcc 1135
|||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 198 tcagcacgaagttcccttcccctctccacagctttatcacagtcc 154
>gb|BU984967.1|BU984967 HF05L05r HF Hordeum vulgare subsp. vulgare cDNA clone HF05L05
5-PRIME, mRNA sequence
Length = 605
Score = 367 bits (185), Expect = e-100
Identities = 350/405 (86%)
Strand = Plus / Minus
Query: 731 ggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatccttt 790
||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 605 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 546
Query: 791 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 850
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 545 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 486
Query: 851 aagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgt 910
|| | ||| || |||||||| ||||||||||| |||| ||||| ||||| |||||||||
Sbjct: 485 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 426
Query: 911 tgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttc 970
|||||||| ||||| || || ||||||||||||| ||| |||||||||||||||| |||
Sbjct: 425 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 366
Query: 971 cgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtc 1030
|| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| ||
Sbjct: 365 cggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttc 306
Query: 1031 ttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaa 1090
|||||||| ||| | ||||| |||||||||||||| |||||||| | || ||||||||||
Sbjct: 305 ttagcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaa 246
Query: 1091 tcagcacgaagttctcttcccctctccacagccttatcacagtcc 1135
|||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 245 tcagcacgaagttcccttcccctctccacagctttatcacagtcc 201
>gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04C07
5-PRIME, mRNA sequence
Length = 634
Score = 353 bits (178), Expect = 8e-096
Identities = 478/578 (82%)
Strand = Plus / Minus
Query: 521 cctctgttagccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctgg 580
|||||||| |||||||| || || | ||| || ||| | |||||||| ||||| ||||||
Sbjct: 578 cctctgttcgccttgttgatctgctgaatacatctctttacaccatcgagcagctcctgg 519
Query: 581 tttttcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttc 640
|| |||| |||||||||||||| ||||||| |||||||| |||||||| || ||||||
Sbjct: 518 ttactcggatcatgcttcaggccttcctgataagtttccatcgccttgtcgtactctttc 459
Query: 641 atgaagaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttca 700
||||| || || || || || ||||| ||||| || || | ||| ||||| ||||| ||
Sbjct: 458 atgaaaaactggatcgcgcccttcctggtgtatcccttggagaatgtgggatctagctcg 399
Query: 701 agacacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggca 760
| |||||||| ||||| || |||||||| |||||||| || | ||||||||| ||||||
Sbjct: 398 atgcacttctcggcatccttgagaccttcgggcatggcacccagcttggtgtaacaggca 339
Query: 761 gccctattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgt 820
||||| |||||||| ||| | |||||||||||||||||| |||| || || ||||| ||
Sbjct: 338 gccctgttgctgtataccttgggatcctttgggtttctcctgagcgcttcggtgtaatgc 279
Query: 821 tttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctca 880
|| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||
Sbjct: 278 ttaattgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctca 219
Query: 881 tctgctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcc 940
|| || | ||||||||| ||||||||||||||||| | ||| || || |||| |||||
Sbjct: 218 tcagccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagca 159
Query: 941 tcattcaactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtc 1000
||||| | |||| || ||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 158 tcatttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtc 99
Query: 1001 tcgatggcaatatcaaaatccttagaggtcttagcaagcttgactagagctgttcctttt 1060
|| ||||||| ||| | || || || | ||| ||||| ||| | ||||| ||||||||
Sbjct: 98 tcaatggcaacatcgtagtctttggaagacttggcaagtttggcaagagcagttcctttc 39
Query: 1061 cttgtcagtgcccttgaaatcatcttgaaatcagcacg 1098
|||||||||||||| || | ||||||||| ||||||||
Sbjct: 38 cttgtcagtgccctcgagaccatcttgaagtcagcacg 1
>gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003B23f, mRNA sequence
Length = 1024
Score = 351 bits (177), Expect = 3e-095
Identities = 420/501 (83%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 515 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 456
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 455 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 396
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 395 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 336
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| ||||| |||||||| || || | ||
Sbjct: 335 tttctcctgcaaatcctcctgacttatgtcacccctgttggccttgttgatctgctgaac 276
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 275 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 216
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 215 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 156
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 155 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 96
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 95 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 36
Query: 790 tgggtttctcttgagagcctc 810
||||| ||| ||| ||||||
Sbjct: 35 cgggttcctcctgatagcctc 15
>gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 3', mRNA sequence
Length = 599
Score = 343 bits (173), Expect = 8e-093
Identities = 398/473 (84%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 124 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 183
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 184 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 243
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 244 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 303
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 304 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 363
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 364 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 423
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 424 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 483
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 484 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 543
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctag 782
|||||||||||| | |||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 544 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctag 596
>gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003H10f, mRNA sequence
Length = 562
Score = 341 bits (172), Expect = 3e-092
Identities = 403/480 (83%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || |||||||| |||||
Sbjct: 482 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttttgtgccactcc 423
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||| | ||||||||||||||||| | | ||||||
Sbjct: 422 agggtccttcagatgatcctgagcagccatagggttctcctggaaatccatcaacacctg 363
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 362 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 303
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| ||||| |||||||| || || | ||
Sbjct: 302 tttctcctgcaaatcctcctgacttatgtcacccctgttggccttgttgatctgctgaac 243
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 242 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 183
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 182 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 123
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 122 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 63
Query: 730 aggcatggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctt 789
|||||||||||| | |||||| ||||| ||||| ||||||||||| ||||||| ||||||
Sbjct: 62 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 3
>gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i08 5', mRNA sequence
Length = 590
Score = 325 bits (164), Expect = 2e-087
Identities = 458/555 (82%), Gaps = 1/555 (0%)
Strand = Plus / Minus
Query: 521 cctctgttagccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctgg 580
|||||||| |||||||| || || | ||| || ||| | |||||||| ||||| ||||||
Sbjct: 558 cctctgttcgccttgttgatctgctgaatacatctctttacaccatcgagcagctcctgg 499
Query: 581 tttttcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttc 640
|| |||| |||||||||||||| ||||||| |||||||| |||||||| || ||||||
Sbjct: 498 ttactcggatcatgcttcaggccttcctgataagtttccatcgccttgtcgtactctttc 439
Query: 641 atgaagaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttca 700
||||| || || || || || ||||| ||||| || || | ||| ||||| ||||| ||
Sbjct: 438 atgaaaaactggatcgcgcccttcctggtgtatcccttggagaatgtgggatctagctcg 379
Query: 701 agacacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggca 760
| |||||||| ||||| || |||||||| |||||||| || | ||||||||| ||||||
Sbjct: 378 atgcacttctcggcatccttgagaccttcgggcatggcacccagcttggtgtaacaggca 319
Query: 761 gccctattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgt 820
||||| |||||||| ||| | |||||||||||||||||| |||| || || ||||| ||
Sbjct: 318 gccctgttgctgtataccttgggatcctttgggtttctcctgagcgcttcggtgtaatgc 259
Query: 821 tttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctca 880
|| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||
Sbjct: 258 ttaattgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctca 199
Query: 881 tctgctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcc 940
|| || | ||||||||| ||||||||||||||||| | ||| || || |||| |||||
Sbjct: 198 tcagccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagca 139
Query: 941 tcattcaactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtc 1000
||||| | |||| || ||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 138 tcatttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtc 79
Query: 1001 tcgatggcaatatcaaaatccttagaggtcttagcaagcttgactagagctgttcctttt 1060
|| ||||||| ||| | || || || | ||| ||||| ||| | ||||| ||||||||
Sbjct: 78 tcaatggcaacatcgtagtctttggaagacttggcaagtttggcaagagcagttcctttn 19
Query: 1061 -cttgtcagtgccct 1074
||||||||||||||
Sbjct: 18 ccttgtcagtgccct 4
>gb|CK122663.1|CK122663 BES1824104p09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P094 5-PRIME, mRNA sequence
Length = 708
Score = 307 bits (155), Expect = 4e-082
Identities = 328/385 (85%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 752 tagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttgagagcctcc 811
||||| ||||| ||||||||||| ||||||| | | | ||||| ||| ||| ||||||
Sbjct: 708 tagcatgcagctctattgctgtataccctagcancttcggggttcctcctgatagcctca 649
Query: 812 gtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcctttctct 871
||| || |||||||||||||| || || |||| |||||| | ||| || ||||||||
Sbjct: 648 tngtaatgctttattgcttctggatacttctgctgcttgaacatctcattacctttctcc 589
Query: 872 ctctcctcatctgctaattttggatcatagtactcttgttgctccaactcttttttcgct 931
||||||||||| |||| ||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct: 588 ctctcctcatcagctatctttgggtcataatactcttgttgctccaaatctttctttgcc 529
Query: 932 ctctcagcctcattcaactttttaagagtgtctgggtt-ccgatgctcagttagagcctt 990
||||||||||||| ||| |||||||||||||||| || ||| |||||||||||||||||
Sbjct: 528 ttctcagcctcatttaaccttttaagagtgtctggattnccggtgctcagttagagcctt 469
Query: 991 ctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttgactagagc 1050
|||| | ||||| |||||||||||| | ||||| ||| |||||||||| ||| | |||||
Sbjct: 468 ctggaaagtctcaatggcaatatcatagtccttggagttcttagcaagtttggccagagc 409
Query: 1051 tgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagttctcttcc 1110
|||||||||||||| |||||||| | || |||||||||||||||||||||||| |||||
Sbjct: 408 agttccttttcttgttagtgccctagcaaccatcttgaaatcagcacgaagttcccttcc 349
Query: 1111 cctctccacagccttatcacagtcc 1135
|||||||||||| ||||||||||||
Sbjct: 348 cctctccacagctttatcacagtcc 324
>gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
5-PRIME, mRNA sequence
Length = 631
Score = 299 bits (151), Expect = 1e-079
Identities = 358/427 (83%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 437 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 378
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 377 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 318
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 317 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 258
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 257 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 198
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 197 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 138
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 137 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 78
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 77 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 18
Query: 730 aggcatg 736
|||||||
Sbjct: 17 aggcatg 11
>gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A05
5-PRIME, mRNA sequence
Length = 629
Score = 299 bits (151), Expect = 1e-079
Identities = 358/427 (83%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 437 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 378
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 377 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 318
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 317 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 258
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 257 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 198
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 197 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 138
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 137 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 78
Query: 670 gtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttc 729
|||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 77 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 18
Query: 730 aggcatg 736
|||||||
Sbjct: 17 aggcatg 11
>gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_E07 5', mRNA sequence
Length = 620
Score = 291 bits (147), Expect = 3e-077
Identities = 373/447 (83%), Gaps = 1/447 (0%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 447 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 388
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 387 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 328
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 327 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 268
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 267 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 208
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 207 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 148
Query: 610 ataggtttccatggccttgtcatattctttcat-gaagaattgaattgcacctttccttg 668
|| |||||||| ||||| |||| ||| ||||| || || |||| |||||| |||||||
Sbjct: 147 gtaagtttccattgccttctcatgttccttcataaaaaaactgaactgcacccttccttg 88
Query: 669 tgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagacctt 728
| |||||||| | |||||| |||||||| |||| |||||||||||| |||||||||||||
Sbjct: 87 tataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagacctt 28
Query: 729 caggcatggctcctaacttggtgtagc 755
||||||||||||| | |||||| ||||
Sbjct: 27 caggcatggctcccagcttggtatagc 1
>gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. vulgare cDNA clone HB08B02
5-PRIME, mRNA sequence
Length = 579
Score = 285 bits (144), Expect = 2e-075
Identities = 441/540 (81%)
Strand = Plus / Minus
Query: 439 agggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttcttg 498
|||||| || || ||||||||||| || ||||| |||||||||||| |||||| || |
Sbjct: 551 agggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcctt 492
Query: 499 caattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcct 558
|| ||| ||| | | | || |||||||| |||||||| || || | ||| || ||| |
Sbjct: 491 cagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctctt 432
Query: 559 aacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttc 618
|||||||| ||||| |||||||| |||| |||||||||||||| ||||||| |||||
Sbjct: 431 tacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtttc 372
Query: 619 catggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttt 678
||| |||||||| || ||||||||||| || || || || || ||||| ||||| || ||
Sbjct: 371 catcgccttgtcgtactctttcatgaaaaactggatcgcgcccttcctggtgtatccctt 312
Query: 679 agtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggc 738
| ||| ||||| ||||| || | |||||||| ||||| || |||||||| ||||||||
Sbjct: 311 ggagaatgtgggatctagctcgatgcacttctcggcatccttgagaccttcgggcatggc 252
Query: 739 tcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttct 798
|| | ||||||||| ||||||||||| |||||||| ||| | |||||||||||||||||
Sbjct: 251 acccagcttggtgtaacaggcagccctgttgctgtataccttgggatcctttgggtttct 192
Query: 799 cttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactc 858
| |||| || || ||||| || || |||||||||||||||||||||| ||| ||||||||
Sbjct: 191 cctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgctgcttaaagaactc 132
Query: 859 gttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaa 918
||| |||||||||| ||||||||| || | ||||||||| ||||||||||||||||| |
Sbjct: 131 gttacctttctctcgctcctcatcagccagttttggatcgtagtactcttgttgctcgag 72
Query: 919 ctcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctc 978
||| || || |||| ||||| ||||| | |||| || ||||||||||| ||||||||
Sbjct: 71 ctccttctttgctcgttcagcatcatttagtcttttcagggtgtctgggtttcgatgctc 12
>gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B02 5', mRNA sequence
Length = 445
Score = 274 bits (138), Expect = 6e-072
Identities = 369/445 (82%), Gaps = 1/445 (0%)
Strand = Plus / Minus
Query: 312 atcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccag 371
|||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||||
Sbjct: 445 atcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccag 386
Query: 372 ggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtc 431
||| ||||| || ||||| || ||| | ||||||||||||||||| | | ||||||||
Sbjct: 385 ggtctttcagatgatcctgagcagccntagggttctcctggaaatccatcaacacctgtc 326
Query: 432 tcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtc 491
||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 325 gcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgtt 266
Query: 492 tttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgc 551
| || ||||| || ||||||||||| ||||| |||||||||||||| || || | || |
Sbjct: 265 tctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacac 206
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||| | |||||||||||||||||||| || |||||| |||| | |||||||| |
Sbjct: 205 acctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggt 146
Query: 612 aggtttccatggccttgtcatattctttcat-gaagaattgaattgcacctttccttgtg 670
| |||||||| ||||| |||| ||| ||||| || || |||| |||||| ||||||||
Sbjct: 145 aagtttccattgccttctcatgttccttcataaaaaaactgaactgcacccttccttgta 86
Query: 671 taccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttca 730
|||||||| | |||||| |||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 85 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 26
Query: 731 ggcatggctcctaacttggtgtagc 755
||||||||||| | |||||| ||||
Sbjct: 25 ggcatggctcccagcttggtatagc 1
>gb|AV916719.1|AV916719 AV916719 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19g10 5', mRNA sequence
Length = 459
Score = 262 bits (132), Expect = 2e-068
Identities = 306/364 (84%)
Strand = Plus / Minus
Query: 786 cctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgct 845
|||||||||||||| |||| || || ||||| || || ||||||||||||||||||||||
Sbjct: 459 cctttgggtttctcctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgct 400
Query: 846 ccttgaagaactcgttgcctttctctctctcctcatctgctaattttggatcatagtact 905
||| ||||||||||| |||||||||| ||||||||| || | ||||||||| |||||||
Sbjct: 399 gcttaaagaactcgttacctttctctcgctcctcatcagccagttttggatcgtagtact 340
Query: 906 cttgttgctccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctg 965
|||||||||| | ||| || || |||| ||||| ||||| | |||| || |||||||
Sbjct: 339 cttgttgctcgagctccttctttgctcgttcagcatcatttagtcttttcagggtgtctg 280
Query: 966 ggttccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttag 1025
|||| |||||||| ||||||||||||||| ||||||| ||||||| ||| | || || |
Sbjct: 279 ggtttcgatgctccgttagagccttctggaaggtctcaatggcaacatcgtagtctttgg 220
Query: 1026 aggtcttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatct 1085
| | ||| ||||| ||| | ||||| |||||||| |||||||||||||| || | |||||
Sbjct: 219 aagacttggcaagtttggcaagagcagttcctttccttgtcagtgccctcgagaccatct 160
Query: 1086 tgaaatcagcacgaagttctcttcccctctccacagccttatcacagtccttgatgcatt 1145
|||| |||||||||||||| ||||||||||| |||||| | ||||| ||||| ||||| |
Sbjct: 159 tgaagtcagcacgaagttcccttcccctctcaacagccgtgtcacaatccttaatgcaat 100
Query: 1146 catc 1149
||||
Sbjct: 99 catc 96
>gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67b5 5' similar to TPR1, mRNA
sequence
Length = 627
Score = 262 bits (132), Expect = 2e-068
Identities = 429/528 (81%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||| ||||||||||| || || || |||||||| ||||||||| | || || |||||||
Sbjct: 536 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 477
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatga 437
| || |||||||| || ||| | || ||||||||||||||| | | |||||| | ||| |
Sbjct: 476 tgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgccgcatca 417
Query: 438 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 497
|||||| || || ||||||||||| || ||||| |||||||||||| |||||| ||||
Sbjct: 416 cagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctctt 357
Query: 498 gcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcc 557
|| ||| ||| | | | || |||||||| |||||||| || || | ||| || |||
Sbjct: 356 tcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctct 297
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
| |||||||| ||||| |||||||| |||| |||||||||||||| ||||||| ||||
Sbjct: 296 ttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagttt 237
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctt 677
|||| |||||||| || ||||||||||| || || || || || ||||| ||||| || |
Sbjct: 236 ccatcgccttgtcgtactctttcatgaaaaactggatcgcgcccttcctggtgtatccct 177
Query: 678 tagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatgg 737
| | ||| ||||| ||||| || | |||||||| ||||| || |||||||| |||||||
Sbjct: 176 tggagaatgtgggatctagctcgatgcacttctcggcatccttgagaccttcgggcatgg 117
Query: 738 ctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttc 797
| || | ||||||||| ||||||||||| |||||||| ||| | ||||||||||||||||
Sbjct: 116 cacccagcttggtgtaacaggcagccctgttgctgtataccttgggatcctttgggtttc 57
Query: 798 tcttgagagcctccgtgtagtgttttattgcttctgggtatttttgct 845
|| |||| || || ||||| || || ||||||||||||||||||||||
Sbjct: 56 tcctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgct 9
>gb|CA030138.1|CA030138 HX06D05r HX Hordeum vulgare subsp. vulgare cDNA clone HX06D05
5-PRIME, mRNA sequence
Length = 618
Score = 242 bits (122), Expect = 2e-062
Identities = 275/326 (84%)
Strand = Plus / Minus
Query: 824 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 883
|||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||
Sbjct: 599 attgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctcatca 540
Query: 884 gctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcctca 943
|| | ||||||||| ||||||||||||||||| | ||| || || |||| ||||| |||
Sbjct: 539 gccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagcatca 480
Query: 944 ttcaactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtctcg 1003
|| | |||| || ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct: 479 tttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtctca 420
Query: 1004 atggcaatatcaaaatccttagaggtcttagcaagcttgactagagctgttccttttctt 1063
||||||| ||| | || || || | ||| ||||| ||| | ||||| |||||||| |||
Sbjct: 419 atggcaacatcgtagtctttggaagacttggcaagtttggcaagagcagttcctttcctt 360
Query: 1064 gtcagtgcccttgaaatcatcttgaaatcagcacgaagttctcttcccctctccacagcc 1123
||||||||||| || | ||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 359 gtcagtgccctcgagaccatcttgaagtcagcacgaagttcccttcccctctcaacagcc 300
Query: 1124 ttatcacagtccttgatgcattcatc 1149
| ||||| ||||| ||||| |||||
Sbjct: 299 gtgtcacaatccttaatgcaatcatc 274
>gb|CA030860.1|CA030860 HX08F13r HX Hordeum vulgare subsp. vulgare cDNA clone HX08F13
5-PRIME, mRNA sequence
Length = 639
Score = 242 bits (122), Expect = 2e-062
Identities = 275/326 (84%)
Strand = Plus / Minus
Query: 824 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 883
|||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||
Sbjct: 618 attgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctcatca 559
Query: 884 gctaattttggatcatagtactcttgttgctccaactcttttttcgctctctcagcctca 943
|| | ||||||||| ||||||||||||||||| | ||| || || |||| ||||| |||
Sbjct: 558 gccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagcatca 499
Query: 944 ttcaactttttaagagtgtctgggttccgatgctcagttagagccttctggtaggtctcg 1003
|| | |||| || ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct: 498 tttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtctca 439
Query: 1004 atggcaatatcaaaatccttagaggtcttagcaagcttgactagagctgttccttttctt 1063
||||||| ||| | || || || | ||| ||||| ||| | ||||| |||||||| |||
Sbjct: 438 atggcaacatcgtagtctttggaagacttggcaagtttggcaagagcagttcctttcctt 379
Query: 1064 gtcagtgcccttgaaatcatcttgaaatcagcacgaagttctcttcccctctccacagcc 1123
||||||||||| || | ||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 378 gtcagtgccctcgagaccatcttgaagtcagcacgaagttcccttcccctctcaacagcc 319
Query: 1124 ttatcacagtccttgatgcattcatc 1149
| ||||| ||||| ||||| |||||
Sbjct: 318 gtgtcacaatccttaatgcaatcatc 293
>gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 3', mRNA sequence
Length = 704
Score = 232 bits (117), Expect = 2e-059
Identities = 306/369 (82%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 314 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 373
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 374 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 433
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 434 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 493
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 494 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 553
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 554 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 613
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 614 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 673
Query: 670 gtacccttt 678
||||||||
Sbjct: 674 atacccttt 682
>gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38l14 3', mRNA sequence
Length = 680
Score = 232 bits (117), Expect = 2e-059
Identities = 306/369 (82%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 312 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 371
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 372 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 431
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 432 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 491
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 492 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 551
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 609
|||||||| | |||||||||||||||||||| || |||||| |||| | ||||||||
Sbjct: 552 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 611
Query: 610 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 669
|| |||||||| ||||| |||||||| ||||| || || |||| |||||| ||||||||
Sbjct: 612 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 671
Query: 670 gtacccttt 678
||||||||
Sbjct: 672 atacccttt 680
>gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20p01 3', mRNA sequence
Length = 682
Score = 218 bits (110), Expect = 3e-055
Identities = 306/370 (82%), Gaps = 1/370 (0%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 310 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 369
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 370 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 429
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 430 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 489
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 490 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 549
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcct- 608
|||||||| | |||||||||||||||||||| || |||||| |||| | |||||||
Sbjct: 550 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 609
Query: 609 gataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
| || |||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||
Sbjct: 610 ggtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttg 669
Query: 669 tgtacccttt 678
| ||||||||
Sbjct: 670 tatacccttt 679
>gb|AV914472.1|AV914472 AV914472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6g21 5', mRNA sequence
Length = 247
Score = 194 bits (98), Expect = 4e-048
Identities = 181/209 (86%)
Strand = Plus / Minus
Query: 707 ttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggcagcccta 766
||||| ||||| || |||||||| |||||||| || | ||||||||| ||| |||||||
Sbjct: 247 ttctcggcatccttgagaccttcgggcatggcacccagcttggtgtaacagncagccctg 188
Query: 767 ttgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgttttatt 826
|||||||| ||| | |||||||||||||||||| |||| || || ||||| || || |||
Sbjct: 187 ttgctgtataccttgggatcctttgggtttctcctgagcgcttcggtgtaatgcttaatt 128
Query: 827 gcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatctgct 886
||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||| ||
Sbjct: 127 gcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctcatcagcc 68
Query: 887 aattttggatcatagtactcttgttgctc 915
| ||||||||| |||||||||||||||||
Sbjct: 67 agttttggatcgtagtactcttgttgctc 39
>gb|CA014563.1|CA014563 HT11L04r HT Hordeum vulgare subsp. vulgare cDNA clone HT11L04
5-PRIME, mRNA sequence
Length = 647
Score = 190 bits (96), Expect = 7e-047
Identities = 150/168 (89%)
Strand = Plus / Minus
Query: 968 ttccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagag 1027
||||| ||||||||||||||||||||| | ||||| |||||||||||| | ||||| |||
Sbjct: 646 ttccggtgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggag 587
Query: 1028 gtcttagcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttg 1087
|||||||||| ||| | ||||| |||||||||||||| |||||||| | || |||||||
Sbjct: 586 ttcttagcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttg 527
Query: 1088 aaatcagcacgaagttctcttcccctctccacagccttatcacagtcc 1135
||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 526 aaatcagcacgaagttcccttcccctctccacagctttatcacagtcc 479
>gb|CA025335.1|CA025335 HZ51N09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51N09
5-PRIME, mRNA sequence
Length = 605
Score = 186 bits (94), Expect = 1e-045
Identities = 145/162 (89%)
Strand = Plus / Minus
Query: 974 tgctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtctta 1033
||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |||||
Sbjct: 601 tgctcagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttctta 542
Query: 1034 gcaagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatca 1093
||||| ||| | ||||| |||||||||||||| |||||||| | || |||||||||||||
Sbjct: 541 gcaagtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatca 482
Query: 1094 gcacgaagttctcttcccctctccacagccttatcacagtcc 1135
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 481 gcacgaagttcccttcccctctccacagctttatcacagtcc 440
>gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G02F1, mRNA sequence
Length = 543
Score = 182 bits (92), Expect = 2e-044
Identities = 239/288 (82%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 308 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 249
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 248 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 189
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 188 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 129
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 128 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 69
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgctt 597
|||||||| | |||||||||||||||||||| || |||||| ||||
Sbjct: 68 acacctccttatgccatcaagcagttcctggttattagggtcaagctt 21
>gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37e05 3', mRNA sequence
Length = 434
Score = 182 bits (92), Expect = 2e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 140 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 199
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 200 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 259
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 260 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 319
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 320 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 379
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgctt 597
|||||||| | |||||||||||||||||||| || |||||| ||||
Sbjct: 380 acacctccttatgccatcaagcagttcctggttattagggtcaagctt 427
>gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
3-PRIME, mRNA sequence
Length = 622
Score = 182 bits (92), Expect = 2e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 329 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 388
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 389 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 448
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 449 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 508
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 509 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 568
Query: 550 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgctt 597
|||||||| | |||||||||||||||||||| || |||||| ||||
Sbjct: 569 acacctccttatgccatcaagcagttcctggttattagggtcaagctt 616
>gb|CA014289.1|CA014289 HT10P01r HT Hordeum vulgare subsp. vulgare cDNA clone HT10P01
5-PRIME, mRNA sequence
Length = 630
Score = 178 bits (90), Expect = 3e-043
Identities = 141/158 (89%)
Strand = Plus / Minus
Query: 978 cagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaa 1037
||||||||||||||||| | ||||| |||||||||||| | ||||| ||| |||||||||
Sbjct: 630 cagttagagccttctggaaagtctcaatggcaatatcatagtccttggagttcttagcaa 571
Query: 1038 gcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcac 1097
| ||| | ||||| |||||||||||||| |||||||| | || |||||||||||||||||
Sbjct: 570 gtttggccagagcagttccttttcttgttagtgccctagcaaccatcttgaaatcagcac 511
Query: 1098 gaagttctcttcccctctccacagccttatcacagtcc 1135
||||||| ||||||||||||||||| ||||||||||||
Sbjct: 510 gaagttcccttcccctctccacagctttatcacagtcc 473
>gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23m02 3', mRNA sequence
Length = 617
Score = 176 bits (89), Expect = 1e-042
Identities = 227/273 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 314 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 373
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 374 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 433
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 434 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 493
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 549
| | || ||||| || ||||||||||| ||||| |||||||||||||| || || | ||
Sbjct: 494 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 553
Query: 550 gcacctcctaacaccatcaagcagttcctggtt 582
|||||||| | ||||||||||||||||||||
Sbjct: 554 acacctccttatgccatcaagcagttcctggtt 586
>gb|BJ465210.1|BJ465210 BJ465210 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38l14 5', mRNA sequence
Length = 209
Score = 161 bits (81), Expect = 6e-038
Identities = 135/153 (88%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 188 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 129
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || ||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct: 128 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 69
Query: 983 agagccttctggtaggtctcgatggcaatatca 1015
|||||||||||| | ||||| ||||||||||||
Sbjct: 68 agagccttctggaaagtctcaatggcaatatca 36
>gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. vulgare cDNA clone HI11L23
3-PRIME, mRNA sequence
Length = 570
Score = 161 bits (81), Expect = 6e-038
Identities = 336/421 (79%)
Strand = Plus / Plus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||| ||||||||||| || || || |||||||| ||||||||| | || || |||||||
Sbjct: 148 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 207
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatga 437
| || |||||||| || ||| | || ||||||||||||||| | | |||||| | ||| |
Sbjct: 208 tgagatgctcctgcgcagccttgggattctcctggaaatcaatcaacacctgccgcatca 267
Query: 438 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 497
|||||| || || ||||||||||| || ||||| |||||||||||| |||||| || |
Sbjct: 268 cagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcct 327
Query: 498 gcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcc 557
|| ||| ||| | | | || |||||||| |||||||| || || | ||| || |||
Sbjct: 328 tcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctct 387
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
| |||||||| ||||| |||||||| |||| |||||||||||||| ||||||| ||||
Sbjct: 388 ttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagttt 447
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctt 677
|||| |||||||| || ||||||||||| || || || || || ||||| ||||| || |
Sbjct: 448 ccatcgccttgtcgtactctttcatgaaaaactggatcgcgcccttcctggtgtatccct 507
Query: 678 tagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatgg 737
| | ||| ||||| ||||| || | |||||||| ||||| || |||||||| |||||||
Sbjct: 508 tggagaatgtgggatctagctcgatgcacttctcggcatccttgagaccttcgggcatgg 567
Query: 738 c 738
|
Sbjct: 568 c 568
>gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39p01 3', mRNA sequence
Length = 640
Score = 159 bits (80), Expect = 2e-037
Identities = 191/228 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 395 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 454
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 455 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 514
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 515 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 574
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
| | || ||||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 575 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgtt 622
>gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. vulgare cDNA clone HI02A16
3-PRIME, mRNA sequence
Length = 558
Score = 159 bits (80), Expect = 2e-037
Identities = 191/228 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 327 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 386
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 387 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 446
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 447 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 506
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
| | || ||||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 507 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgtt 554
>gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. vulgare cDNA clone HA03A17
3-PRIME, mRNA sequence
Length = 540
Score = 159 bits (80), Expect = 2e-037
Identities = 191/228 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 305 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 364
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 365 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 424
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 425 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 484
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
| | || ||||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 485 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgtt 532
>gb|BQ468025.1|BQ468025 HR01L03r HR Hordeum vulgare subsp. vulgare cDNA clone HR01L03
5-PRIME, mRNA sequence
Length = 547
Score = 155 bits (78), Expect = 4e-036
Identities = 189/226 (83%)
Strand = Plus / Minus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 236 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 177
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 176 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 117
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 116 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 57
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttg 535
| | || ||||| || ||||||||||| ||||| ||||||||||||
Sbjct: 56 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttg 11
>gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I16 5', mRNA sequence
Length = 498
Score = 155 bits (78), Expect = 4e-036
Identities = 190/228 (83%)
Strand = Plus / Plus
Query: 310 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 369
|||||||||| |||||||||| ||||| ||| ||||| || ||||| || |||||
Sbjct: 243 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 302
Query: 370 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 429
||||| |||||| || ||||| || ||||| ||||||||||||||||| | | ||||||
Sbjct: 303 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 362
Query: 430 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 489
|| ||||||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 363 tcgcatgataggatcggtnaggatgttctggatntctgggtcctgcatagctttactctg 422
Query: 490 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
| | || ||||| || ||||||||||| ||||| ||||||||||||||
Sbjct: 423 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgtt 470
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,821
Number of Sequences: 312970
Number of extensions: 101821
Number of successful extensions: 29117
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29000
Number of HSP's gapped (non-prelim): 97
length of query: 1151
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1132
effective length of database: 169,188,109
effective search space: 191520939388
effective search space used: 191520939388
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)