BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgar... 500 e-140
gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgar... 500 e-140
gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulg... 482 e-134
gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-a... 430 e-119
gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA li... 408 e-112
gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. v... 408 e-112
gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA li... 394 e-108
gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA li... 381 e-104
gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA li... 375 e-102
gb|AV913792.1|AV913792 AV913792 K. Sato unpublished cDNA li... 373 e-102
gb|BJ465465.1|BJ465465 BJ465465 K. Sato unpublished cDNA li... 373 e-102
gb|BU985696.1|BU985696 HF08F13r HF Hordeum vulgare subsp. v... 373 e-102
gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-a... 365 2e-099
gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-a... 347 4e-094
gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA li... 333 6e-090
gb|BU986190.1|BU986190 HF09P03r HF Hordeum vulgare subsp. v... 321 2e-086
gb|BI947435.1|BI947435 HVSMEl0005H16f Hordeum vulgare spike... 319 9e-086
gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. v... 305 1e-081
gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. v... 305 1e-081
gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no... 297 3e-079
gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no... 293 5e-078
gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. v... 252 2e-065
gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA li... 248 3e-064
gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. v... 248 3e-064
gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA li... 242 2e-062
gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA li... 238 3e-061
gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA li... 228 3e-058
gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm librar... 224 4e-057
gb|BU985151.1|BU985151 HF06E15r HF Hordeum vulgare subsp. v... 208 2e-052
gb|BU976042.1|BU976042 HA03A17r HA Hordeum vulgare subsp. v... 206 1e-051
gb|BU984967.1|BU984967 HF05L05r HF Hordeum vulgare subsp. v... 206 1e-051
gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subs... 188 2e-046
gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA li... 180 5e-044
gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA li... 172 1e-041
gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. v... 172 1e-041
gb|AV914472.1|AV914472 AV914472 K. Sato unpublished cDNA li... 165 3e-039
gb|AV922011.1|AV922011 AV922011 K. Sato unpublished cDNA li... 149 2e-034
gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. v... 149 2e-034
gb|CB874745.1|CB874745 HX06D05w HX Hordeum vulgare subsp. v... 149 2e-034
gb|CB875451.1|CB875451 HX08F13w HX Hordeum vulgare subsp. v... 149 2e-034
gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA li... 145 3e-033
gb|AV916719.1|AV916719 AV916719 K. Sato unpublished cDNA li... 143 1e-032
gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthe... 143 1e-032
gb|CK122663.1|CK122663 BES1824104p09 BES1824 Hordeum vulgar... 141 5e-032
gb|BJ476688.1|BJ476688 BJ476688 K. Sato unpublished cDNA li... 139 2e-031
gb|BQ758109.1|BQ758109 EBma01_SQ001_P04_R maternal, 4 DPA, ... 137 7e-031
gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. v... 137 7e-031
gb|BJ465210.1|BJ465210 BJ465210 K. Sato unpublished cDNA li... 135 3e-030
gb|AV919525.1|AV919525 AV919525 K. Sato unpublished cDNA li... 133 1e-029
gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. v... 133 1e-029
gb|CA030138.1|CA030138 HX06D05r HX Hordeum vulgare subsp. v... 131 5e-029
gb|CA030860.1|CA030860 HX08F13r HX Hordeum vulgare subsp. v... 131 5e-029
gb|BQ468025.1|BQ468025 HR01L03r HR Hordeum vulgare subsp. v... 121 4e-026
gb|CA006166.1|CA006166 HU05B18u HU Hordeum vulgare subsp. v... 115 3e-024
gb|CA010273.1|CA010273 HT10P01u HT Hordeum vulgare subsp. v... 105 3e-021
gb|CA010063.1|CA010063 HT11L04u HT Hordeum vulgare subsp. v... 92 4e-017
gb|BQ468560.1|BQ468560 HM01J16T HM Hordeum vulgare subsp. v... 88 6e-016
gb|BQ762687.1|BQ762687 EBro02_SQ004_B20_R root, 3 week, hyd... 88 6e-016
gb|BQ762688.1|BQ762688 EBro02_SQ004_B21_R root, 3 week, hyd... 88 6e-016
gb|CB859612.1|CB859612 HI11A04w HI Hordeum vulgare subsp. v... 84 9e-015
gb|BI948007.1|BI948007 HVSMEl0007M23f Hordeum vulgare spike... 80 1e-013
gb|BI777816.2|BI777816 EBro08_SQ002_D01_R root, 3 week, dro... 80 1e-013
gb|BQ761897.1|BQ761897 EBpi01_SQ005_O05_R pistil, 1 DPA, no... 76 2e-012
gb|BJ465830.1|BJ465830 BJ465830 K. Sato unpublished cDNA li... 58 5e-007
>gb|CK122738.1|CK122738 BES1824105j24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J245 5-PRIME, mRNA sequence
Length = 793
Score = 500 bits (252), Expect = e-140
Identities = 546/645 (84%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 668 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 609
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 608 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 549
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 548 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 489
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 488 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 429
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 428 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 369
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 368 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 309
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 308 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 249
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 248 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 189
Query: 736 aagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgt 795
|| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||||
Sbjct: 188 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 129
Query: 796 tgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttc 855
||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||
Sbjct: 128 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 69
Query: 856 cgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
|| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 68 cggtgctcagttagagccttctggaaagtctcaatggcaatatca 24
>gb|CK123682.1|CK123682 BES1824105b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B085 5-PRIME, mRNA sequence
Length = 744
Score = 500 bits (252), Expect = e-140
Identities = 546/645 (84%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 668 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 609
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 608 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 549
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 548 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 489
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 488 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 429
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 428 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 369
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 368 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 309
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 308 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 249
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 248 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 189
Query: 736 aagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgt 795
|| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||||
Sbjct: 188 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 129
Query: 796 tgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttc 855
||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||
Sbjct: 128 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 69
Query: 856 cgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
|| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 68 cggtgctcagttagagccttctggaaagtctcaatggcaatatca 24
>gb|CK125898.1|CK125898 BES1824111B1f01 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F0111 5-PRIME, mRNA sequence
Length = 877
Score = 482 bits (243), Expect = e-134
Identities = 523/617 (84%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 632 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 573
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 572 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 513
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 512 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 453
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 452 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 393
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 392 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 333
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 332 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 273
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 272 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 213
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 212 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 153
Query: 736 aagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgt 795
|| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||||
Sbjct: 152 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 93
Query: 796 tgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttc 855
||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||
Sbjct: 92 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 33
Query: 856 cgatgcncagtcagagc 872
|| ||| |||| |||||
Sbjct: 32 cggtgctcagttagagc 16
>gb|BE231164.2|BE231164 HVSMEg0017E08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017E08f, mRNA sequence
Length = 908
Score = 430 bits (217), Expect = e-119
Identities = 495/586 (84%), Gaps = 2/586 (0%)
Strand = Plus / Minus
Query: 315 tcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 374
|||||||||||| ||| |||| |||||||| || |||||||| |||| |||||| ||||
Sbjct: 629 tcgcatgataggatcg-taagcatgttctg-atttctgggtcctgcaaagctttactctg 572
Query: 375 tctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaac 434
| | || ||||| || ||||| ||||| ||||| ||||||||||||||||||| | |||
Sbjct: 571 tttctcctgcaaatcctcctgacttatgtcacccttgttggccttgttgatctgctgaac 512
Query: 435 acacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctg 494
||||||| | | |||||||||||||||||||| || |||||| |||| || ||||||||
Sbjct: 511 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 452
Query: 495 gtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgt 554
||| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||
Sbjct: 451 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 392
Query: 555 ataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttc 614
||||||||||| |||||| ||||| || |||| |||||| ||||||||||||||||||||
Sbjct: 391 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 332
Query: 615 aggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatcctt 674
|||||||||||| | |||||| ||||| || || |||||||| || ||||||| ||||||
Sbjct: 331 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 272
Query: 675 cgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 734
|||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 271 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 212
Query: 735 gaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttg 794
||| | ||| || |||||||| ||||||||||| || | ||||| |||||| |||||||
Sbjct: 211 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 152
Query: 795 ttgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggtt 854
|||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| ||
Sbjct: 151 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 92
Query: 855 ccgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
||| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 91 ccggtgctcagttagagccttctggaaagtctcaatggcaatatca 46
>gb|BJ465157.1|BJ465157 BJ465157 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 5', mRNA sequence
Length = 625
Score = 408 bits (206), Expect = e-112
Identities = 440/519 (84%)
Strand = Plus / Minus
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||
Sbjct: 623 tgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacctc 564
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
| | |||||||||||||||||||| || |||||| |||| || ||||||||||| |||
Sbjct: 563 cttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtt 504
Query: 502 tccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccct 561
|||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||||||||
Sbjct: 503 tccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtataccct 444
Query: 562 ttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatg 621
|||| |||||| ||||| || |||| |||||| |||||||||||||||||||||||||||
Sbjct: 443 ttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatg 384
Query: 622 gctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggttt 681
||||| | |||||| ||||| || || |||||||| || ||||||| ||||||||||||
Sbjct: 383 gctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttc 324
Query: 682 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 741
||| ||| |||||| |||| || |||||||||||||| || || |||| |||||| | |
Sbjct: 323 ctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatc 264
Query: 742 tcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctct 801
|| || |||||||| ||||||||||| || | ||||| |||||| |||||||||||||
Sbjct: 263 tcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgctcc 204
Query: 802 aactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgc 861
|| ||||||||||| |||||||||||| ||||| |||||||||| ||||| ||||| |||
Sbjct: 203 aaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgc 144
Query: 862 ncagtcagagccttctgggaggnctcgatagcaatatca 900
|||| |||||||||||| | | ||| || |||||||||
Sbjct: 143 tcagttagagccttctggaaagtctcaatggcaatatca 105
>gb|CA022828.1|CA022828 HZ44H15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44H15
5-PRIME, mRNA sequence
Length = 536
Score = 408 bits (206), Expect = e-112
Identities = 440/519 (84%)
Strand = Plus / Minus
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||
Sbjct: 534 tgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacctc 475
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
| | |||||||||||||||||||| || |||||| |||| || ||||||||||| |||
Sbjct: 474 cttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtt 415
Query: 502 tccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccct 561
|||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||||||||
Sbjct: 414 tccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtataccct 355
Query: 562 ttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatg 621
|||| |||||| ||||| || |||| |||||| |||||||||||||||||||||||||||
Sbjct: 354 ttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatg 295
Query: 622 gctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggttt 681
||||| | |||||| ||||| || || |||||||| || ||||||| ||||||||||||
Sbjct: 294 gctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttc 235
Query: 682 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaac 741
||| ||| |||||| |||| || |||||||||||||| || || |||| |||||| | |
Sbjct: 234 ctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatc 175
Query: 742 tcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctct 801
|| || |||||||| ||||||||||| || | ||||| |||||| |||||||||||||
Sbjct: 174 tcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgctcc 115
Query: 802 aactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgc 861
|| ||||||||||| |||||||||||| ||||| |||||||||| ||||| ||||| |||
Sbjct: 114 aaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgc 55
Query: 862 ncagtcagagccttctgggaggnctcgatagcaatatca 900
|||| |||||||||||| | | ||| || |||||||||
Sbjct: 54 tcagttagagccttctggaaagtctcaatggcaatatca 16
>gb|AV916463.1|AV916463 AV916463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 5', mRNA sequence
Length = 508
Score = 394 bits (199), Expect = e-108
Identities = 418/491 (85%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 493 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagcttta 434
Query: 370 ttctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgt 429
||||| | || ||||| || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 433 ctctgtttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgc 374
Query: 430 tcaacacacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagcca 489
| |||||||||| | | |||||||||||||||||||| || |||||| |||| || |||
Sbjct: 373 tgaacacacctccttatgccatcaagcagttcctggttattagggtcaagctttaaccca 314
Query: 490 gcctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttc 549
|||||||| ||||||| ||||| |||||||| ||||| || ||||||| |||||| |||
Sbjct: 313 gcctggtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttc 254
Query: 550 ctcgtataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaaga 609
|| ||||||||||||| |||||| ||||| || |||| |||||| |||||||||||||||
Sbjct: 253 cttgtataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaaga 194
Query: 610 ccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctagga 669
||||||||||||||||| | |||||| ||||| || || |||||||| || ||||||| |
Sbjct: 193 ccttcaggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagca 134
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||||||||| ||| ||| |||||| |||| || |||||||||||||| || || |||
Sbjct: 133 tccttcgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgc 74
Query: 730 tccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaac 789
| |||||| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||
Sbjct: 73 tgcttgaacatctcattacctttctccctctcctcatcagctatctttgggtcataatac 14
Query: 790 tcttgttgctc 800
|||||||||||
Sbjct: 13 tcttgttgctc 3
>gb|AV921401.1|AV921401 AV921401 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f01 3', mRNA sequence
Length = 663
Score = 381 bits (192), Expect = e-104
Identities = 423/500 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 161 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 220
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 221 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 280
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 281 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 340
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 341 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 400
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 401 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 460
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 461 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 520
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 521 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 580
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 581 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 640
Query: 736 aagaactcgttgcctttctc 755
|| | ||| || ||||||||
Sbjct: 641 aacatctcattacctttctc 660
>gb|BJ451978.1|BJ451978 BJ451978 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37e05 5', mRNA sequence
Length = 617
Score = 375 bits (189), Expect = e-102
Identities = 405/478 (84%)
Strand = Plus / Minus
Query: 423 gatctgttcaacacacctcttaacaccatcaagcagttcctggttgttcgggtcatgctt 482
|||||| | |||||||||| | | |||||||||||||||||||| || |||||| ||||
Sbjct: 617 gatctgctgaacacacctccttatgccatcaagcagttcctggttattagggtcaagctt 558
Query: 483 caagccagcctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgc 542
|| ||||||||||| ||||||| ||||| |||||||| ||||| || ||||||| |||
Sbjct: 557 taacccagcctggtaagtttccattgccttctcatattccttcataaaaaactgaactgc 498
Query: 543 acctttcctcgtataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtc 602
||| ||||| ||||||||||||| |||||| ||||| || |||| |||||| ||||||||
Sbjct: 497 acccttccttgtataccctttggagaaggttgggtctagctcaatacacttctctgcgtc 438
Query: 603 tttaagaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaac 662
|||||||||||||||||||||||| | |||||| ||||| || || |||||||| || ||
Sbjct: 437 tttaagaccttcaggcatggctcccagcttggtatagcatgcagctctattgctgtatac 378
Query: 663 cctaggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggta 722
||||| |||||||||||| ||| ||| |||||| |||| || |||||||||||||| ||
Sbjct: 377 cctagcatccttcgggttcctcctgatagcctcattgtaatgctttattgcttctggata 318
Query: 723 tttttgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatc 782
|| |||| |||||| | ||| || |||||||| ||||||||||| || | ||||| ||
Sbjct: 317 cttctgctgcttgaacatctcattacctttctccctctcctcatcagctatctttgggtc 258
Query: 783 ataaaactcttgttgctctaactctttctttgctttctcagcctcanttaactttttaag 842
|||| ||||||||||||| || ||||||||||| |||||||||||| ||||| |||||||
Sbjct: 257 ataatactcttgttgctccaaatctttctttgccttctcagcctcatttaaccttttaag 198
Query: 843 agtttctgggttccgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
||| ||||| ||||| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 197 agtgtctggattccggtgctcagttagagccttctggaaagtctcaatggcaatatca 140
>gb|AV913792.1|AV913792 AV913792 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f01 5', mRNA sequence
Length = 519
Score = 373 bits (188), Expect = e-102
Identities = 386/453 (85%)
Strand = Plus / Minus
Query: 448 ccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacg 507
|||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||
Sbjct: 516 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 457
Query: 508 gccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtg 567
||||| |||||||| ||||| || ||||||| |||||| ||||| ||||||||||||| |
Sbjct: 456 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 397
Query: 568 aaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcct 627
||||| ||||| || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 337
Query: 628 aacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttg 687
| |||||| ||||| || || |||||||| || ||||||| |||||||||||| ||| ||
Sbjct: 336 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 277
Query: 688 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 747
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 276 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 217
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||| ||||||||||| || | ||||| |||||| ||||||||||||| || |||
Sbjct: 216 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 157
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| ||||
Sbjct: 156 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 97
Query: 868 agagccttctgggaggnctcgatagcaatatca 900
|||||||||||| | | ||| || |||||||||
Sbjct: 96 agagccttctggaaagtctcaatggcaatatca 64
>gb|BJ465465.1|BJ465465 BJ465465 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39p01 5', mRNA sequence
Length = 579
Score = 373 bits (188), Expect = e-102
Identities = 386/453 (85%)
Strand = Plus / Minus
Query: 448 ccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacg 507
|||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||
Sbjct: 574 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 515
Query: 508 gccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtg 567
||||| |||||||| ||||| || ||||||| |||||| ||||| ||||||||||||| |
Sbjct: 514 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 455
Query: 568 aaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcct 627
||||| ||||| || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 454 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 395
Query: 628 aacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttg 687
| |||||| ||||| || || |||||||| || ||||||| |||||||||||| ||| ||
Sbjct: 394 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 335
Query: 688 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 747
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 334 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 275
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||| ||||||||||| || | ||||| |||||| ||||||||||||| || |||
Sbjct: 274 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 215
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| ||||
Sbjct: 214 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 155
Query: 868 agagccttctgggaggnctcgatagcaatatca 900
|||||||||||| | | ||| || |||||||||
Sbjct: 154 agagccttctggaaagtctcaatggcaatatca 122
>gb|BU985696.1|BU985696 HF08F13r HF Hordeum vulgare subsp. vulgare cDNA clone HF08F13
5-PRIME, mRNA sequence
Length = 555
Score = 373 bits (188), Expect = e-102
Identities = 386/453 (85%)
Strand = Plus / Minus
Query: 448 ccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacg 507
|||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||
Sbjct: 554 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 495
Query: 508 gccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtg 567
||||| |||||||| ||||| || ||||||| |||||| ||||| ||||||||||||| |
Sbjct: 494 gccttctcatattccttcataaaaaactgaactgcacccttccttgtataccctttggag 435
Query: 568 aaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcct 627
||||| ||||| || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 434 aaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggcatggctccc 375
Query: 628 aacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttg 687
| |||||| ||||| || || |||||||| || ||||||| |||||||||||| ||| ||
Sbjct: 374 agcttggtatagcatgcagctctattgctgtataccctagcatccttcgggttcctcctg 315
Query: 688 agagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttg 747
| |||||| |||| || |||||||||||||| || || |||| |||||| | ||| ||
Sbjct: 314 atagcctcattgtaatgctttattgcttctggatacttctgctgcttgaacatctcatta 255
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||| ||||||||||| || | ||||| |||||| ||||||||||||| || |||
Sbjct: 254 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 195
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| ||||
Sbjct: 194 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 135
Query: 868 agagccttctgggaggnctcgatagcaatatca 900
|||||||||||| | | ||| || |||||||||
Sbjct: 134 agagccttctggaaagtctcaatggcaatatca 102
>gb|AW982381.2|AW982381 HVSMEg0003B23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003B23f, mRNA sequence
Length = 1024
Score = 365 bits (184), Expect = 2e-099
Identities = 376/440 (85%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 454 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 395
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 394 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 335
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| |||||||||||||||||||| | ||||
Sbjct: 334 ttctcctgcaaatcctcctgacttatgtcacccctgttggccttgttgatctgctgaaca 275
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 274 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 215
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 214 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 155
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 154 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 95
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 94 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 35
Query: 676 gggtttctcttgagagcctc 695
||||| ||| ||| ||||||
Sbjct: 34 gggttcctcctgatagcctc 15
>gb|AW982510.3|AW982510 HVSMEg0003H10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003H10f, mRNA sequence
Length = 562
Score = 347 bits (175), Expect = 4e-094
Identities = 337/391 (86%)
Strand = Plus / Minus
Query: 286 gggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctgg 345
||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||||
Sbjct: 391 gggttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctgg 332
Query: 346 atctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttca 405
|| |||||||| ||||||||||| ||||| | || ||||| || ||||| ||||| |||
Sbjct: 331 atttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtca 272
Query: 406 cctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctgg 465
|| |||||||||||||||||||| | |||||||||| | | ||||||||||||||||||
Sbjct: 271 cccctgttggccttgttgatctgctgaacacacctccttatgccatcaagcagttcctgg 212
Query: 466 ttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttc 525
|| || |||||| |||| || ||||||||||| ||||||| ||||| |||||||| |||
Sbjct: 211 ttattagggtcaagctttaacccagcctggtaagtttccattgccttctcatattccttc 152
Query: 526 atgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttca 585
|| || ||||||| |||||| ||||| ||||||||||||| |||||| ||||| || |||
Sbjct: 151 ataaaaaactgaactgcacccttccttgtataccctttggagaaggttgggtctagctca 92
Query: 586 agacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcg 645
| |||||| |||||||||||||||||||||||||||||||| | |||||| ||||| ||
Sbjct: 91 atacacttctctgcgtctttaagaccttcaggcatggctcccagcttggtatagcatgca 32
Query: 646 gccctattgctataaaccctaggatccttcg 676
|| |||||||| || ||||||| ||||||||
Sbjct: 31 gctctattgctgtataccctagcatccttcg 1
>gb|AV917985.1|AV917985 AV917985 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f05 3', mRNA sequence
Length = 599
Score = 333 bits (168), Expect = 6e-090
Identities = 351/412 (85%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 185 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 244
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 245 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 304
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 305 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 364
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 365 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 424
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 425 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 484
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 485 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 544
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctag 667
||||||||||| | |||||| ||||| || || |||||||| || |||||||
Sbjct: 545 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctag 596
>gb|BU986190.1|BU986190 HF09P03r HF Hordeum vulgare subsp. vulgare cDNA clone HF09P03
5-PRIME, mRNA sequence
Length = 580
Score = 321 bits (162), Expect = 2e-086
Identities = 345/407 (84%)
Strand = Plus / Minus
Query: 494 ggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcg 553
|||| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |
Sbjct: 580 ggtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttg 521
Query: 554 tataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagacctt 613
|||||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||
Sbjct: 520 tataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagacctt 461
Query: 614 caggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatcct 673
||||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||
Sbjct: 460 caggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcct 401
Query: 674 tcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcct 733
||||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||
Sbjct: 400 tcgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgct 341
Query: 734 tgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactctt 793
|||| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||
Sbjct: 340 tgaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactctt 281
Query: 794 gttgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggt 853
||||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |
Sbjct: 280 gttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggat 221
Query: 854 tccgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
|||| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 220 tccggtgctcagttagagccttctggaaagtctcaatggcaatatca 174
>gb|BI947435.1|BI947435 HVSMEl0005H16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005H16f, mRNA sequence
Length = 498
Score = 319 bits (161), Expect = 9e-086
Identities = 341/402 (84%)
Strand = Plus / Minus
Query: 499 gtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtatac 558
||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||||||
Sbjct: 495 gtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtatac 436
Query: 559 cctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggc 618
||||||| |||||| ||||| || |||| |||||| ||||||||||||||||||||||||
Sbjct: 435 cctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttcaggc 376
Query: 619 atggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcggg 678
|||||||| | |||||| ||||| || || |||||||| || ||||||| ||||||||||
Sbjct: 375 atggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttcggg 316
Query: 679 tttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaag 738
|| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||||
Sbjct: 315 ttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttgaac 256
Query: 739 aactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgc 798
| ||| || |||||||| ||||||||||| || | ||||| |||||| |||||||||||
Sbjct: 255 atctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgttgc 196
Query: 799 tctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttccga 858
|| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||
Sbjct: 195 tccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattccgg 136
Query: 859 tgcncagtcagagccttctgggaggnctcgatagcaatatca 900
||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 135 tgctcagttagagccttctggaaagtctcaatggcaatatca 94
>gb|BQ464281.1|BQ464281 HF01N09T HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
5-PRIME, mRNA sequence
Length = 631
Score = 305 bits (154), Expect = 1e-081
Identities = 313/366 (85%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 376 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 317
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 316 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 257
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 256 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 197
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 196 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 137
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 136 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 77
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 76 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 17
Query: 616 ggcatg 621
||||||
Sbjct: 16 ggcatg 11
>gb|BU987175.1|BU987175 HF14A05r HF Hordeum vulgare subsp. vulgare cDNA clone HF14A05
5-PRIME, mRNA sequence
Length = 629
Score = 305 bits (154), Expect = 1e-081
Identities = 313/366 (85%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 376 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 317
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 316 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 257
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 256 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 197
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 196 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 137
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 136 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 77
Query: 556 taccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttca 615
|||||||||| |||||| ||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 76 taccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttca 17
Query: 616 ggcatg 621
||||||
Sbjct: 16 ggcatg 11
>gb|BM372544.2|BM372544 EBpi05_SQ003_E07_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_E07 5', mRNA sequence
Length = 620
Score = 297 bits (150), Expect = 3e-079
Identities = 328/386 (84%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 386 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 327
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 326 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 267
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 266 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 207
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 206 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 147
Query: 496 taggtttccacggccttgtcatattctttcat-gaagaactgaattgcacctttcctcgt 554
|| ||||||| ||||| |||| ||| ||||| || ||||||| |||||| ||||| ||
Sbjct: 146 taagtttccattgccttctcatgttccttcataaaaaaactgaactgcacccttccttgt 87
Query: 555 ataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttc 614
||||||||||| |||||| ||||| || |||| |||||| ||||||||||||||||||||
Sbjct: 86 ataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaagaccttc 27
Query: 615 aggcatggctcctaacttggtgtagc 640
|||||||||||| | |||||| ||||
Sbjct: 26 aggcatggctcccagcttggtatagc 1
>gb|BM372473.2|BM372473 EBpi05_SQ003_B02_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_B02 5', mRNA sequence
Length = 445
Score = 293 bits (148), Expect = 5e-078
Identities = 305/356 (85%), Gaps = 1/356 (0%)
Strand = Plus / Minus
Query: 286 gggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctgg 345
||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||||
Sbjct: 356 gggttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctgg 297
Query: 346 atctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttca 405
|| |||||||| ||||||||||| ||||| | || ||||| || ||||| ||||| |||
Sbjct: 296 atttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtca 237
Query: 406 cctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctgg 465
|| ||||| |||||||||||||| | |||||||||| | | ||||||||||||||||||
Sbjct: 236 cccctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctgg 177
Query: 466 ttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttc 525
|| || |||||| |||| || ||||||||||| ||||||| ||||| |||| ||| |||
Sbjct: 176 ttattagggtcaagctttaacccagcctggtaagtttccattgccttctcatgttccttc 117
Query: 526 at-gaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttc 584
|| || ||||||| |||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 116 ataaaaaaactgaactgcacccttccttgtataccctttggagaaggttgggtctagctc 57
Query: 585 aagacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagc 640
|| |||||| |||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct: 56 aatacacttctctgcgtctttaagaccttcaggcatggctcccagcttggtatagc 1
>gb|BU968615.1|BU968615 HB08B02r BC Hordeum vulgare subsp. vulgare cDNA clone HB08B02
5-PRIME, mRNA sequence
Length = 579
Score = 252 bits (127), Expect = 2e-065
Identities = 412/507 (81%)
Strand = Plus / Minus
Query: 310 acctgtcgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 369
||||| ||||| | |||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 565 acctgccgcatcacagggtccgtcaggatgttctggatttcagggtcctgcatagctttg 506
Query: 370 ttctgtctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgt 429
|||||| || | || ||| ||| || | | || |||||||| ||||||||||||||
Sbjct: 505 ccctgtctctccttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgc 446
Query: 430 tcaacacacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagcca 489
| || ||| ||||| |||||||| ||||| |||||||| |||| |||||||||| |||
Sbjct: 445 tgaatacatctctttacaccatcgagcagctcctggttactcggatcatgcttcaggcct 386
Query: 490 gcctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttc 549
|||| || ||||||| |||||||| || ||||||||||| ||||| || || || |||
Sbjct: 385 tcctgataagtttccatcgccttgtcgtactctttcatgaaaaactggatcgcgcccttc 326
Query: 550 ctcgtataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaaga 609
|| || || || |||| ||| ||||| || || || | ||||| || || || || |||
Sbjct: 325 ctggtgtatcccttggagaatgtgggatctagctcgatgcacttctcggcatccttgaga 266
Query: 610 ccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctagga 669
||||| |||||||| || | ||||||||| ||||| ||||| ||||| || ||| | |||
Sbjct: 265 ccttcgggcatggcacccagcttggtgtaacaggcagccctgttgctgtataccttggga 206
Query: 670 tccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 729
||||| ||||||||| |||| || || ||||| || || |||||||||||||||||||||
Sbjct: 205 tcctttgggtttctcctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgc 146
Query: 730 tccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaac 789
| ||| ||||||||||| |||||||||| ||||||||| |||| ||||||||| || ||
Sbjct: 145 tgcttaaagaactcgttacctttctctcgctcctcatcagccagttttggatcgtagtac 86
Query: 790 tcttgttgctctaactctttctttgct 816
||||||||||| | ||| |||||||||
Sbjct: 85 tcttgttgctcgagctccttctttgct 59
>gb|BJ463405.1|BJ463405 BJ463405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i08 5', mRNA sequence
Length = 590
Score = 248 bits (125), Expect = 3e-064
Identities = 392/482 (81%)
Strand = Plus / Minus
Query: 406 cctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctgg 465
|||||||| |||||||||||||| | || ||| ||||| |||||||| ||||| ||||||
Sbjct: 558 cctctgttcgccttgttgatctgctgaatacatctctttacaccatcgagcagctcctgg 499
Query: 466 ttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttc 525
|| |||| |||||||||| ||| |||| || ||||||| |||||||| || ||||||
Sbjct: 498 ttactcggatcatgcttcaggccttcctgataagtttccatcgccttgtcgtactctttc 439
Query: 526 atgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttca 585
||||| ||||| || || || ||||| || || || |||| ||| ||||| || || ||
Sbjct: 438 atgaaaaactggatcgcgcccttcctggtgtatcccttggagaatgtgggatctagctcg 379
Query: 586 agacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcg 645
| ||||| || || || || |||||||| |||||||| || | ||||||||| |||||
Sbjct: 378 atgcacttctcggcatccttgagaccttcgggcatggcacccagcttggtgtaacaggca 319
Query: 646 gccctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgt 705
||||| ||||| || ||| | |||||||| ||||||||| |||| || || ||||| ||
Sbjct: 318 gccctgttgctgtataccttgggatcctttgggtttctcctgagcgcttcggtgtaatgc 259
Query: 706 tttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctca 765
|| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||
Sbjct: 258 ttaattgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctca 199
Query: 766 tctgccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcc 825
|| |||| ||||||||| || ||||||||||||| | ||| ||||||||| |||||
Sbjct: 198 tcagccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagca 139
Query: 826 tcanttaactttttaagagtttctgggttccgatgcncagtcagagccttctgggaggnc 885
||| ||| |||| || || |||||||| |||||| | || |||||||||||| ||| |
Sbjct: 138 tcatttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtc 79
Query: 886 tc 887
||
Sbjct: 78 tc 77
>gb|BU967383.1|BU967383 HB04C07r BC Hordeum vulgare subsp. vulgare cDNA clone HB04C07
5-PRIME, mRNA sequence
Length = 634
Score = 248 bits (125), Expect = 3e-064
Identities = 392/482 (81%)
Strand = Plus / Minus
Query: 406 cctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctgg 465
|||||||| |||||||||||||| | || ||| ||||| |||||||| ||||| ||||||
Sbjct: 578 cctctgttcgccttgttgatctgctgaatacatctctttacaccatcgagcagctcctgg 519
Query: 466 ttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttc 525
|| |||| |||||||||| ||| |||| || ||||||| |||||||| || ||||||
Sbjct: 518 ttactcggatcatgcttcaggccttcctgataagtttccatcgccttgtcgtactctttc 459
Query: 526 atgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttca 585
||||| ||||| || || || ||||| || || || |||| ||| ||||| || || ||
Sbjct: 458 atgaaaaactggatcgcgcccttcctggtgtatcccttggagaatgtgggatctagctcg 399
Query: 586 agacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcg 645
| ||||| || || || || |||||||| |||||||| || | ||||||||| |||||
Sbjct: 398 atgcacttctcggcatccttgagaccttcgggcatggcacccagcttggtgtaacaggca 339
Query: 646 gccctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgt 705
||||| ||||| || ||| | |||||||| ||||||||| |||| || || ||||| ||
Sbjct: 338 gccctgttgctgtataccttgggatcctttgggtttctcctgagcgcttcggtgtaatgc 279
Query: 706 tttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctca 765
|| |||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||
Sbjct: 278 ttaattgcttctgggtatttttgctgcttaaagaactcgttacctttctctcgctcctca 219
Query: 766 tctgccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcc 825
|| |||| ||||||||| || ||||||||||||| | ||| ||||||||| |||||
Sbjct: 218 tcagccagttttggatcgtagtactcttgttgctcgagctccttctttgctcgttcagca 159
Query: 826 tcanttaactttttaagagtttctgggttccgatgcncagtcagagccttctgggaggnc 885
||| ||| |||| || || |||||||| |||||| | || |||||||||||| ||| |
Sbjct: 158 tcatttagtcttttcagggtgtctgggtttcgatgctccgttagagccttctggaaggtc 99
Query: 886 tc 887
||
Sbjct: 98 tc 97
>gb|BJ468316.1|BJ468316 BJ468316 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c23 3', mRNA sequence
Length = 704
Score = 242 bits (122), Expect = 2e-062
Identities = 263/310 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 375 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 434
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 435 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 494
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 495 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 554
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 555 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 614
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 615 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 674
Query: 556 taccctttgg 565
||||||||||
Sbjct: 675 taccctttgg 684
>gb|BJ468417.1|BJ468417 BJ468417 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38l14 3', mRNA sequence
Length = 680
Score = 238 bits (120), Expect = 3e-061
Identities = 261/308 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 373 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 432
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 433 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 492
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 493 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 552
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 553 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 612
Query: 496 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 555
|| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| |||
Sbjct: 613 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 672
Query: 556 tacccttt 563
||||||||
Sbjct: 673 tacccttt 680
>gb|AV918402.1|AV918402 AV918402 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20p01 3', mRNA sequence
Length = 682
Score = 228 bits (115), Expect = 3e-058
Identities = 263/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 371 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 430
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 431 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 490
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 491 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 550
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcct-g 494
|||||| | | |||||||||||||||||||| || |||||| |||| || ||||||| |
Sbjct: 551 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 610
Query: 495 gtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgt 554
||| ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||
Sbjct: 611 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 670
Query: 555 ataccctttgg 565
|||||||||||
Sbjct: 671 ataccctttgg 681
>gb|CV061294.1|CV061294 BNEL67b5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL67b5 5' similar to TPR1, mRNA
sequence
Length = 627
Score = 224 bits (113), Expect = 4e-057
Identities = 427/529 (80%), Gaps = 2/529 (0%)
Strand = Plus / Minus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| ||||| ||| | || ||||||||||
Sbjct: 536 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 477
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 476 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 418
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| |||||| |||
Sbjct: 417 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctct 358
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 357 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 298
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| |||| || |||
Sbjct: 297 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtt 238
Query: 502 tccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccct 561
|||| |||||||| || ||||||||||| ||||| || || || ||||| || || ||
Sbjct: 237 tccatcgccttgtcgtactctttcatgaaaaactggatcgcgcccttcctggtgtatccc 178
Query: 562 ttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatg 621
|||| ||| ||||| || || || | ||||| || || || || |||||||| ||||||
Sbjct: 177 ttggagaatgtgggatctagctcgatgcacttctcggcatccttgagaccttcgggcatg 118
Query: 622 gctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggttt 681
|| || | ||||||||| ||||| ||||| ||||| || ||| | |||||||| ||||||
Sbjct: 117 gcacccagcttggtgtaacaggcagccctgttgctgtataccttgggatcctttgggttt 58
Query: 682 ctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgct 730
||| |||| || || ||||| || || ||||||||||||||||||||||
Sbjct: 57 ctcctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgct 9
>gb|BU985151.1|BU985151 HF06E15r HF Hordeum vulgare subsp. vulgare cDNA clone HF06E15
5-PRIME, mRNA sequence
Length = 628
Score = 208 bits (105), Expect = 2e-052
Identities = 240/286 (83%)
Strand = Plus / Minus
Query: 615 aggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatcctt 674
|||||||||||| | |||||| ||||| || || |||||||| || ||||||| ||||||
Sbjct: 628 aggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatcctt 569
Query: 675 cgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctcctt 734
|||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| |||
Sbjct: 568 cgggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgctt 509
Query: 735 gaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttg 794
||| | ||| || |||||||| ||||||||||| || | ||||| |||||| |||||||
Sbjct: 508 gaacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttg 449
Query: 795 ttgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggtt 854
|||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| ||
Sbjct: 448 ttgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggatt 389
Query: 855 ccgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
||| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 388 ccggtgctcagttagagccttctggaaagtctcaatggcaatatca 343
>gb|BU976042.1|BU976042 HA03A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA03A17
5-PRIME, mRNA sequence
Length = 558
Score = 206 bits (104), Expect = 1e-051
Identities = 239/285 (83%)
Strand = Plus / Minus
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 558 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 499
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 498 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 439
Query: 736 aagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgt 795
|| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||||
Sbjct: 438 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 379
Query: 796 tgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttc 855
||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||
Sbjct: 378 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 319
Query: 856 cgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
|| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 318 cggtgctcagttagagccttctggaaagtctcaatggcaatatca 274
>gb|BU984967.1|BU984967 HF05L05r HF Hordeum vulgare subsp. vulgare cDNA clone HF05L05
5-PRIME, mRNA sequence
Length = 605
Score = 206 bits (104), Expect = 1e-051
Identities = 239/285 (83%)
Strand = Plus / Minus
Query: 616 ggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttc 675
||||||||||| | |||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct: 605 ggcatggctcccagcttggtatagcatgcagctctattgctgtataccctagcatccttc 546
Query: 676 gggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttg 735
||||| ||| ||| |||||| |||| || |||||||||||||| || || |||| ||||
Sbjct: 545 gggttcctcctgatagcctcattgtaatgctttattgcttctggatacttctgctgcttg 486
Query: 736 aagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaactcttgt 795
|| | ||| || |||||||| ||||||||||| || | ||||| |||||| ||||||||
Sbjct: 485 aacatctcattacctttctccctctcctcatcagctatctttgggtcataatactcttgt 426
Query: 796 tgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctgggttc 855
||||| || ||||||||||| |||||||||||| ||||| |||||||||| ||||| |||
Sbjct: 425 tgctccaaatctttctttgccttctcagcctcatttaaccttttaagagtgtctggattc 366
Query: 856 cgatgcncagtcagagccttctgggaggnctcgatagcaatatca 900
|| ||| |||| |||||||||||| | | ||| || |||||||||
Sbjct: 365 cggtgctcagttagagccttctggaaagtctcaatggcaatatca 321
>gb|AJ433069.1|AJ433069 AJ433069 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200051G02F1, mRNA sequence
Length = 543
Score = 188 bits (95), Expect = 2e-046
Identities = 209/247 (84%)
Strand = Plus / Minus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 247 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 188
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 187 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 128
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 127 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 68
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || |||||| |||| || |||||||||
Sbjct: 67 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 8
Query: 496 taggttt 502
|| ||||
Sbjct: 7 taagttt 1
>gb|BJ456841.1|BJ456841 BJ456841 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23m02 3', mRNA sequence
Length = 617
Score = 180 bits (91), Expect = 5e-044
Identities = 204/242 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 375 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 434
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 435 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 494
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 495 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 554
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 495
|||||| | | |||||||||||||||||||| || ||||| |||| || |||||||||
Sbjct: 555 cacctccttatgccatcaagcagttcctggttattanggtcaagctttaacccagcctgg 614
Query: 496 ta 497
||
Sbjct: 615 ta 616
>gb|BJ459539.1|BJ459539 BJ459539 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37e05 3', mRNA sequence
Length = 434
Score = 172 bits (87), Expect = 1e-041
Identities = 192/227 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 201 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 260
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 261 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 320
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 321 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 380
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgctt 482
|||||| | | |||||||||||||||||||| || |||||| ||||
Sbjct: 381 cacctccttatgccatcaagcagttcctggttattagggtcaagctt 427
>gb|BQ659826.1|BQ659826 HF01N09w HF Hordeum vulgare subsp. vulgare cDNA clone HF01N09
3-PRIME, mRNA sequence
Length = 622
Score = 172 bits (87), Expect = 1e-041
Identities = 192/227 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 390 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 449
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 450 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 509
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 510 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 569
Query: 436 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgctt 482
|||||| | | |||||||||||||||||||| || |||||| ||||
Sbjct: 570 cacctccttatgccatcaagcagttcctggttattagggtcaagctt 616
>gb|AV914472.1|AV914472 AV914472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6g21 5', mRNA sequence
Length = 247
Score = 165 bits (83), Expect = 3e-039
Identities = 178/210 (84%)
Strand = Plus / Minus
Query: 607 agaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaacccta 666
|||||||| |||||||| || | ||||||||| ||| | ||||| ||||| || ||| |
Sbjct: 232 agaccttcgggcatggcacccagcttggtgtaacagncagccctgttgctgtataccttg 173
Query: 667 ggatccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttt 726
|||||||| ||||||||| |||| || || ||||| || || ||||||||||||||||||
Sbjct: 172 ggatcctttgggtttctcctgagcgcttcggtgtaatgcttaattgcttctgggtatttt 113
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||||||||| |||||||||| ||||||||| |||| ||||||||| ||
Sbjct: 112 tgctgcttaaagaactcgttacctttctctcgctcctcatcagccagttttggatcgtag 53
Query: 787 aactcttgttgctctaactctttctttgct 816
||||||||||||| | ||| |||||||||
Sbjct: 52 tactcttgttgctcgagctccttctttgct 23
>gb|AV922011.1|AV922011 AV922011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19g10 3', mRNA sequence
Length = 589
Score = 149 bits (75), Expect = 2e-034
Identities = 272/335 (81%), Gaps = 2/335 (0%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| ||||| ||| | || ||||||||||
Sbjct: 198 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 257
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 258 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 316
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| |||||| ||
Sbjct: 317 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcc 376
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 377 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 436
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| |||| || |||
Sbjct: 437 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtt 496
Query: 502 tccacggccttgtcatattctttcatgaagaactg 536
|||| |||||||| || ||||||||||| |||||
Sbjct: 497 tccatcgccttgtcgtactctttcatgaaaaactg 531
>gb|CB859832.1|CB859832 HI11L23w HI Hordeum vulgare subsp. vulgare cDNA clone HI11L23
3-PRIME, mRNA sequence
Length = 570
Score = 149 bits (75), Expect = 2e-034
Identities = 272/335 (81%), Gaps = 2/335 (0%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| ||||| ||| | || ||||||||||
Sbjct: 148 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 207
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 208 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 266
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| |||||| ||
Sbjct: 267 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcc 326
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 327 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 386
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| |||| || |||
Sbjct: 387 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtt 446
Query: 502 tccacggccttgtcatattctttcatgaagaactg 536
|||| |||||||| || ||||||||||| |||||
Sbjct: 447 tccatcgccttgtcgtactctttcatgaaaaactg 481
>gb|CB874745.1|CB874745 HX06D05w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D05
3-PRIME, mRNA sequence
Length = 595
Score = 149 bits (75), Expect = 2e-034
Identities = 272/335 (81%), Gaps = 2/335 (0%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| ||||| ||| | || ||||||||||
Sbjct: 178 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 237
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 238 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 296
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| |||||| ||
Sbjct: 297 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcc 356
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 357 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 416
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| |||| || |||
Sbjct: 417 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtt 476
Query: 502 tccacggccttgtcatattctttcatgaagaactg 536
|||| |||||||| || ||||||||||| |||||
Sbjct: 477 tccatcgccttgtcgtactctttcatgaaaaactg 511
>gb|CB875451.1|CB875451 HX08F13w HX Hordeum vulgare subsp. vulgare cDNA clone HX08F13
3-PRIME, mRNA sequence
Length = 595
Score = 149 bits (75), Expect = 2e-034
Identities = 272/335 (81%), Gaps = 2/335 (0%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| ||||| ||| | || ||||||||||
Sbjct: 178 tcatctggactatccctgcgctcacgagcttctggatcttttgcttcacgccggggttct 237
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 238 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 296
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| |||||| ||
Sbjct: 297 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgtctctcc 356
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 357 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 416
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| |||| || |||
Sbjct: 417 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttcctgataagtt 476
Query: 502 tccacggccttgtcatattctttcatgaagaactg 536
|||| |||||||| || ||||||||||| |||||
Sbjct: 477 tccatcgccttgtcgtactctttcatgaaaaactg 511
>gb|BJ468713.1|BJ468713 BJ468713 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39p01 3', mRNA sequence
Length = 640
Score = 145 bits (73), Expect = 3e-033
Identities = 157/185 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 456 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 515
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 516 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 575
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 576 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 635
Query: 436 cacct 440
|||||
Sbjct: 636 cacct 640
>gb|AV916719.1|AV916719 AV916719 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19g10 5', mRNA sequence
Length = 459
Score = 143 bits (72), Expect = 1e-032
Identities = 180/217 (82%)
Strand = Plus / Minus
Query: 671 ccttcgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgct 730
|||| ||||||||| |||| || || ||||| || || ||||||||||||||||||||||
Sbjct: 459 cctttgggtttctcctgagcgcttcggtgtaatgcttaattgcttctgggtatttttgct 400
Query: 731 ccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataaaact 790
||| ||||||||||| |||||||||| ||||||||| |||| ||||||||| || |||
Sbjct: 399 gcttaaagaactcgttacctttctctcgctcctcatcagccagttttggatcgtagtact 340
Query: 791 cttgttgctctaactctttctttgctttctcagcctcanttaactttttaagagtttctg 850
|||||||||| | ||| ||||||||| ||||| ||| ||| |||| || || ||||
Sbjct: 339 cttgttgctcgagctccttctttgctcgttcagcatcatttagtcttttcagggtgtctg 280
Query: 851 ggttccgatgcncagtcagagccttctgggaggnctc 887
|||| |||||| | || |||||||||||| ||| |||
Sbjct: 279 ggtttcgatgctccgttagagccttctggaaggtctc 243
>gb|BQ764688.1|BQ764688 EBca01_SQ004_I16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I16 5', mRNA sequence
Length = 498
Score = 143 bits (72), Expect = 1e-032
Identities = 157/186 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 304 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 363
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| ||||| || ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 364 cgcatgataggatcggtnaggatgttctggatntctgggtcctgcatagctttactctgt 423
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 424 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 483
Query: 436 cacctc 441
||||||
Sbjct: 484 cacctc 489
>gb|CK122663.1|CK122663 BES1824104p09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P094 5-PRIME, mRNA sequence
Length = 708
Score = 141 bits (71), Expect = 5e-032
Identities = 165/196 (84%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 706 tttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctca 765
|||||||||||||| || || |||| |||||| | ||| || |||||||| |||||||||
Sbjct: 639 tttattgcttctggatacttctgctgcttgaacatctcattacctttctccctctcctca 580
Query: 766 tctgccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcc 825
|| || | ||||| |||||| ||||||||||||| || ||||||||||| |||||||||
Sbjct: 579 tcagctatctttgggtcataatactcttgttgctccaaatctttctttgccttctcagcc 520
Query: 826 tcanttaactttttaagagtttctgggtt-ccgatgcncagtcagagccttctgggaggn 884
||| ||||| |||||||||| ||||| || ||| ||| |||| |||||||||||| | |
Sbjct: 519 tcatttaaccttttaagagtgtctggattnccggtgctcagttagagccttctggaaagt 460
Query: 885 ctcgatagcaatatca 900
||| || |||||||||
Sbjct: 459 ctcaatggcaatatca 444
>gb|BJ476688.1|BJ476688 BJ476688 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal36h13 3', mRNA sequence
Length = 558
Score = 139 bits (70), Expect = 2e-031
Identities = 156/185 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 374 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 433
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||| | |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 434 cgcatgatangatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 493
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 435
| || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | ||||
Sbjct: 494 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 553
Query: 436 cacct 440
|||||
Sbjct: 554 cacct 558
>gb|BQ758109.1|BQ758109 EBma01_SQ001_P04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_P04 5', mRNA sequence
Length = 141
Score = 137 bits (69), Expect = 7e-031
Identities = 117/133 (87%)
Strand = Plus / Minus
Query: 548 tcctcgtataccctttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaa 607
|||| ||||||||||||| |||||| ||||| || |||| |||||| |||||||||||||
Sbjct: 141 tccttgtataccctttggagaaggttgggtctagctcaatacacttctctgcgtctttaa 82
Query: 608 gaccttcaggcatggctcctaacttggtgtagcaggcggccctattgctataaaccctag 667
||||||||||||||||||| | |||||| ||||| || || |||||||| || |||||||
Sbjct: 81 gaccttcaggcatggctcccagcttggtatagcatgcagctctattgctgtataccctag 22
Query: 668 gatccttcgggtt 680
||||||||||||
Sbjct: 21 catccttcgggtt 9
>gb|BU976043.1|BU976043 HA03A17u HA Hordeum vulgare subsp. vulgare cDNA clone HA03A17
3-PRIME, mRNA sequence
Length = 540
Score = 137 bits (69), Expect = 7e-031
Identities = 147/173 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 366 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 425
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 426 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 485
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctg 428
| || ||||| || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 486 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctg 538
>gb|BJ465210.1|BJ465210 BJ465210 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38l14 5', mRNA sequence
Length = 209
Score = 135 bits (68), Expect = 3e-030
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
|||||||| ||||||||||| || | ||||| |||||| ||||||||||||| || |||
Sbjct: 188 cctttctccctctcctcatcagctatctttgggtcataatactcttgttgctccaaatct 129
Query: 808 ttctttgctttctcagcctcanttaactttttaagagtttctgggttccgatgcncagtc 867
|||||||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| ||||
Sbjct: 128 ttctttgccttctcagcctcatttaaccttttaagagtgtctggattccggtgctcagtt 69
Query: 868 agagccttctgggaggnctcgatagcaatatca 900
|||||||||||| | | ||| || |||||||||
Sbjct: 68 agagccttctggaaagtctcaatggcaatatca 36
>gb|AV919525.1|AV919525 AV919525 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6g21 3', mRNA sequence
Length = 572
Score = 133 bits (67), Expect = 1e-029
Identities = 346/437 (79%), Gaps = 2/437 (0%)
Strand = Plus / Plus
Query: 203 tcatctgaactatcccagcacttacaagcttctgaatcttctgcataaccccggggttct 262
||||||| |||||||| || || || |||||||| |||| ||| | || ||||||||||
Sbjct: 132 tcatctggactatccctgcgctcacgagcttctgggtcttttgcttcacgccggggttct 191
Query: 263 tcaggtgctcctgggccgcacttggg-ttctcctggaaatctattagaacctgtcgcatg 321
| || |||||||| || || |||||| |||||||||||||| || | ||||| |||||
Sbjct: 192 tgagatgctcctgcgcagc-cttgggattctcctggaaatcaatcaacacctgccgcatc 250
Query: 322 atagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttct 381
| |||||| || || ||||||||||| || ||||| |||||||||||| ||| || ||
Sbjct: 251 acagggtccgtcaggatgttctggatttcagggtcctgcatagctttgccctgnctctcc 310
Query: 382 tgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaacacacctc 441
| || ||| ||| || | | || |||||||| |||||||||||||| | || ||| |||
Sbjct: 311 ttcagttcctccggggtgagctcgcctctgttcgccttgttgatctgctgaatacatctc 370
Query: 442 ttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtt 501
|| |||||||| ||||| |||||||| |||| |||||||||| ||| ||| || |||
Sbjct: 371 tttacaccatcgagcagctcctggttactcggatcatgcttcaggccttnctgataagtt 430
Query: 502 tccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccct 561
|||| |||||||| || ||||||||||| ||||| || || || ||||| || || ||
Sbjct: 431 tccatcgccttgtcgtactctttcatgaaaaactggatcgcgcccttcctggtgtatccc 490
Query: 562 ttggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatg 621
|||| ||| ||||| || || || | ||||| || || || || |||||||| ||||||
Sbjct: 491 ttggagaatgtgggatctagctcgatgcacttctcggcatccttgagaccttcgggcatg 550
Query: 622 gctcctaacttggtgta 638
|| || | |||||||||
Sbjct: 551 gcacccagcttggtgta 567
>gb|BQ660349.1|BQ660349 HI02A16u HI Hordeum vulgare subsp. vulgare cDNA clone HI02A16
3-PRIME, mRNA sequence
Length = 558
Score = 133 bits (67), Expect = 1e-029
Identities = 145/171 (84%)
Strand = Plus / Plus
Query: 256 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 315
|||| |||||| || ||||| || || || ||||||||||||||||| || | ||||||
Sbjct: 388 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 447
Query: 316 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 375
||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct: 448 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 507
Query: 376 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatc 426
| || ||||| || ||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 508 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatc 558
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,287
Number of Sequences: 312970
Number of extensions: 85287
Number of successful extensions: 23468
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23379
Number of HSP's gapped (non-prelim): 72
length of query: 932
length of database: 175,134,539
effective HSP length: 19
effective length of query: 913
effective length of database: 169,188,109
effective search space: 154468743517
effective search space used: 154468743517
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)