BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 260 8e-068
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 240 8e-062
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 240 8e-062
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 236 1e-060
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 230 7e-059
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 230 7e-059
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 230 7e-059
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 230 7e-059
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 230 7e-059
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 230 7e-059
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 230 7e-059
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 224 4e-057
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 224 4e-057
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 224 4e-057
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 218 3e-055
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 196 1e-048
gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA li... 186 1e-045
gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. v... 184 4e-045
gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. v... 184 4e-045
gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. v... 184 4e-045
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 172 1e-041
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 147 8e-034
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 135 3e-030
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 119 2e-025
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 119 2e-025
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 119 2e-025
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 119 2e-025
gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. v... 117 8e-025
gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. v... 113 1e-023
gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed D... 100 2e-019
gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 ... 82 4e-014
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 80 2e-013
gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa... 76 3e-012
gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no... 76 3e-012
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 72 4e-011
gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, n... 72 4e-011
gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. v... 72 4e-011
gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. v... 72 4e-011
gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke devel... 66 2e-009
gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA li... 62 4e-008
gb|BQ464032.1|BQ464032 HF01C16T HF Hordeum vulgare subsp. v... 62 4e-008
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 48 6e-004
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 260 bits (131), Expect = 8e-068
Identities = 422/519 (81%)
Strand = Plus / Plus
Query: 9 ggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcctcttatc 68
||||| |||||| |||| || |||| || |||||| ||||||| |||||||| ||| ||
Sbjct: 1 ggacagtctgatataccatccattgcagcagttgttggttctcgagaatggccccttgtc 60
Query: 69 tcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgactcattg 128
|||||||| || || || || ||| | || |||||||| | |||||||| || ||||||
Sbjct: 61 tcgaaatatagggcttcagtgcgctcgcagtcaccaaagctagaaatgatagattcattg 120
Query: 129 tttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattgacttctac 188
|| ||||||| | | ||||||||||||| || | ||||||||||| ||||||||||||
Sbjct: 121 ttcaagccacaaggaactgaagatgatggccttgttcgggagtgtctcattgacttctac 180
Query: 189 accagttctgggaagagaaagcctgaccaagttatcatattcagggacggtgttagcgaa 248
||||||||||| |||||||| || || || | ||||| |||||||| |||||||||||
Sbjct: 181 accagttctggaaagagaaaaccagatcagatcatcatcttcagggatggtgttagcgag 240
Query: 249 agtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgcaaattt 308
|| ||||||||||||||||||||||| || || | ||||| || ||||| ||||| ||
Sbjct: 241 agccagtttaatcaggtgctgaacatcgaattagatcaaattattgaggcctgcaagttc 300
Query: 309 cttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcatcacact 368
| ||||| || ||||| ||||||||||| ||||| |||| ||||||||||| |||||
Sbjct: 301 ttggatgaaaattggaaccccaagttcacactgattgttgctcagaagaatcaccacaca 360
Query: 369 aaatttttcattcctggaaagccagataatgtcccaccaggaactgtggtggacaacaaa 428
|| |||||||| |||||| || || |||||||| || || ||||| || || ||
Sbjct: 361 aagtttttcatgcctggatctcctgacaatgtccctcctggcactgttgttgataatgct 420
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 421 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 480
Query: 489 acgaggccaactcactaccacatcctgcatgatgagata 527
|| |||||||| || ||||| ||||||||||||||||||
Sbjct: 481 acaaggccaacacattaccatatcctgcatgatgagata 519
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 240 bits (121), Expect = 8e-062
Identities = 292/349 (83%)
Strand = Plus / Plus
Query: 340 tgattattgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatg 399
||||| |||| ||||||||||| ||||| || |||||||| |||||| || || ||||
Sbjct: 44 tgattgttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatg 103
Query: 400 tcccaccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctaca 459
|||| || || ||||| || || || ||||||||||||| ||| | || || ||||
Sbjct: 104 tccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttaca 163
Query: 460 tgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatg 519
|||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||||||
Sbjct: 164 tgtgcgctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatg 223
Query: 520 atgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgt 579
|||||||| ||| | ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 224 atgagatacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgt 283
Query: 580 accaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcag 639
||||||||||||||||||| |||||||| ||| |||| |||||||| |||||||| ||||
Sbjct: 284 accaaaggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcag 343
Query: 640 ctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 344 ctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtc 392
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 240 bits (121), Expect = 8e-062
Identities = 292/349 (83%)
Strand = Plus / Minus
Query: 340 tgattattgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatg 399
||||| |||| ||||||||||| ||||| || |||||||| |||||| || || ||||
Sbjct: 636 tgattgttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatg 577
Query: 400 tcccaccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctaca 459
|||| || || ||||| || || || ||||||||||||| ||| | || || ||||
Sbjct: 576 tccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttaca 517
Query: 460 tgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatg 519
|||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||||||
Sbjct: 516 tgtgcgctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatg 457
Query: 520 atgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgt 579
|||||||| ||| | ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 456 atgagatacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgt 397
Query: 580 accaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcag 639
||||||||||||||||||| |||||||| ||| |||| |||||||| |||||||| ||||
Sbjct: 396 accaaaggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcag 337
Query: 640 ctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 336 ctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtc 288
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 236 bits (119), Expect = 1e-060
Identities = 287/343 (83%)
Strand = Plus / Plus
Query: 346 ttgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtcccac 405
|||| ||||||||||| ||||| || |||||||| |||||| || || |||||||| |
Sbjct: 13 ttgctcagaagaatcaccacacaaagtttttcatgcctggatctcctgacaatgtccctc 72
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
| || ||||| || || || ||||||||||||| ||| | || || |||||||| |
Sbjct: 73 ctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttacatgtgcg 132
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
| |||||||||||||| ||||| || |||||||| || ||||| ||||||||||||||||
Sbjct: 133 ctcatgctggaatgattgggacaacaaggccaacacattaccatatcctgcatgatgaga 192
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
|| ||| | ||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 193 tacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaa 252
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
||||||||||||| |||||||| ||| |||| |||||||| |||||||| ||||||||||
Sbjct: 253 ggagcacaacagcaatatcagttgtttctccaatctgctatgcacatcttgcagctgctc 312
Query: 646 aggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 313 aggtggcgcagttcataaagtttgatgagatgtccgagacgtc 355
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 628 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 569
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 568 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 509
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 508 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 449
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 448 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 389
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 388 gatgagatgtccgagacgtc 369
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 646 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 587
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 586 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 527
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 526 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 467
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 466 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 407
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 406 gatgagatgtccgagacgtc 387
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 604 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 545
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 544 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 485
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 484 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 425
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 424 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 365
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 364 gatgagatgtccgagacgtc 345
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Plus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 71 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 130
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 131 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 190
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 191 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 250
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 251 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 310
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 311 gatgagatgtccgagacgtc 330
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 590 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 531
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 530 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 471
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 470 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 411
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 410 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 351
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 350 gatgagatgtccgagacgtc 331
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 638 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 579
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 578 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 519
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 518 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 459
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 458 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 399
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 398 gatgagatgtccgagacgtc 379
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 230 bits (116), Expect = 7e-059
Identities = 224/260 (86%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 590 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 531
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| |||||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 530 acaaggccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 471
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 470 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 411
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 410 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 351
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 350 gatgagatgtccgagacgtc 331
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 224 bits (113), Expect = 4e-057
Identities = 203/233 (87%)
Strand = Plus / Minus
Query: 456 tacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctg 515
|||||||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 607 tacatgtgcgctcatgctggaatgattgggacaacaaggccaacacattaccatatcctg 548
Query: 516 catgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttat 575
|||||||||||| ||| | ||||| |||||||| || ||||||||||||||||||
Sbjct: 547 catgatgagatacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttat 488
Query: 576 gtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctg 635
||||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||
Sbjct: 487 gtgtaccaaaggagcacaacagcaatatcagttgtttctccaatctgctatgcacatctt 428
Query: 636 gcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||||||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 427 gcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtc 375
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 224 bits (113), Expect = 4e-057
Identities = 203/233 (87%)
Strand = Plus / Minus
Query: 456 tacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctg 515
|||||||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||
Sbjct: 566 tacatgtgcgctcatgctggaatgattgggacaacaaggccaacacattaccatatcctg 507
Query: 516 catgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttat 575
|||||||||||| ||| | ||||| |||||||| || ||||||||||||||||||
Sbjct: 506 catgatgagatacactttgccgcggatgacctgcaggatcttgtgcattcgctctcttat 447
Query: 576 gtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctg 635
||||||||||||||||||||||| |||||||| ||| |||| |||||||| ||||||||
Sbjct: 446 gtgtaccaaaggagcacaacagcaatatcagttgtttctccaatctgctatgcacatctt 387
Query: 636 gcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||||||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 386 gcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtc 334
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 224 bits (113), Expect = 4e-057
Identities = 223/260 (85%)
Strand = Plus / Minus
Query: 429 gtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggact 488
||||||||||||| ||| | || || |||||||| || |||||||||||||| |||||
Sbjct: 637 gtctgccatccaaggaattatgacttttacatgtgcgctcatgctggaatgattgggaca 578
Query: 489 acgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctg 548
|| || ||||| || ||||| |||||||||||||||||| ||| | ||||| |||
Sbjct: 577 acaagnccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctg 518
Query: 549 caggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtc 608
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 517 caggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagtt 458
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||| |||| |||||||| |||||||| |||||||||||||| | ||||||||||||||
Sbjct: 457 gtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagttt 398
Query: 669 gatgagatgtcggagacgtc 688
||||||||||| ||||||||
Sbjct: 397 gatgagatgtccgagacgtc 378
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 218 bits (110), Expect = 3e-055
Identities = 317/386 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
|||| |||||||| |||||| |||| || |||| || |||||| ||||||| |||||||
Sbjct: 158 gatcccctggacagtctgatataccatccattgcagcagttgttggttctcgagaatggc 217
Query: 61 ctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattg 120
| ||| |||||||||| || || || || ||| | || |||||||| | |||||||| |
Sbjct: 218 cccttgtctcgaaatatagggcttcagtgcgctcgcagtcaccaaagctagaaatgatag 277
Query: 121 actcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattg 180
| |||||||| ||||||| | | ||||||||||||| || | ||||||||||| ||||
Sbjct: 278 attcattgttcaagccacaaggaactgaagatgatggccttgttcgggagtgtctcattg 337
Query: 181 acttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtg 240
||||||||||||||||||| |||||||| || || || | ||||| |||||||| ||||
Sbjct: 338 acttctacaccagttctggaaagagaaaaccagatcagatcatcatcttcagggatggtg 397
Query: 241 ttagcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggctt 300
||||||| || ||||||||||||||||||||||| || || | ||||| || ||||| |
Sbjct: 398 ttagcgagagccagtttaatcaggtgctgaacatcgaattagatcaaattattgaggcct 457
Query: 301 gcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaatc 360
|||| || | ||||| || ||||| ||||||||||| ||||| |||| ||||||||||
Sbjct: 458 gcaagttcttggatgaaaattggaaccccaagttcacactgattgttgctcagaagaatc 517
Query: 361 atcacactaaatttttcattcctgga 386
| ||||| || |||||||| ||||||
Sbjct: 518 accacacaaagtttttcatgcctgga 543
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 196 bits (99), Expect = 1e-048
Identities = 294/359 (81%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
|||| |||||||| |||||| |||| || |||| || |||||| ||||||| |||||||
Sbjct: 290 gatcccctggacagtctgatataccatccattgcagcagttgttggttctcgagaatggc 349
Query: 61 ctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattg 120
| ||| |||||||||| || || || || ||| | || |||||||| | |||||||| |
Sbjct: 350 cccttgtctcgaaatatagggcttcagtgcgctcgcagtcaccaaagctagaaatgatag 409
Query: 121 actcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattg 180
| |||||||| ||||||| | | ||||||||||||| || | ||||||||||| ||||
Sbjct: 410 attcattgttcaagccacaaggaactgaagatgatggccttgttcgggagtgtctcattg 469
Query: 181 acttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtg 240
||||||||||||||||||| |||||||| || || || |||||| |||||||| ||||
Sbjct: 470 acttctacaccagttctggaaagagaaaaccagatcagaatatcatcttcagggatggtg 529
Query: 241 ttagcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggctt 300
||||||| || ||||||||||||||||||||||| || || | ||||| || ||||| |
Sbjct: 530 ttagcgagagccagtttaatcaggtgctgaacatcgaattagatcaaattattgaggcct 589
Query: 301 gcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaat 359
||||| | | ||||| || ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 590 gcaaagtcttggatgaaaattggaaccccaagttcacactgattgttgctcagaagaat 648
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 547 tgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcag 606
||||||| || | |||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 833 tgcaggatcttgggcattccctctcttatgtgtaccanaggagc-caacagccatatcag 891
>gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9a21 3', mRNA sequence
Length = 587
Score = 186 bits (94), Expect = 1e-045
Identities = 169/194 (87%)
Strand = Plus / Minus
Query: 495 ccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggag 554
||||| || ||||| |||||||||||||||||| ||| | ||||| ||||||||
Sbjct: 587 ccaacacattaccatatcctgcatgatgagatacactttgccgcggatgacctgcaggat 528
Query: 555 ctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgct 614
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 527 cttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcagttgtttct 468
Query: 615 cccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgag 674
|| |||||||| |||||||| |||||||||||||| | |||||||||||||| ||||||
Sbjct: 467 ccaatctgctatgcacatcttgcagctgctcaggtggcgcagttcataaagtttgatgag 408
Query: 675 atgtcggagacgtc 688
||||| ||||||||
Sbjct: 407 atgtccgagacgtc 394
>gb|BU970597.1|BU970597 HB15B24r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B24
5-PRIME, mRNA sequence
Length = 455
Score = 184 bits (93), Expect = 4e-045
Identities = 276/337 (81%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
|||| |||||||| |||||| |||| || |||| || |||||| ||||||| |||||||
Sbjct: 115 gatcccctggacagtctgatataccatccattgcagcagttgttggttctcgagaatggc 174
Query: 61 ctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattg 120
| ||| |||||||||| || || || || ||| | || |||||||| | |||||||| |
Sbjct: 175 cccttgtctcgaaatatagggcttcagtgcgctcgcagtcaccaaagctagaaatgatag 234
Query: 121 actcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattg 180
| |||||||| ||||||| | | ||||||||||||| || | ||||||||||| ||||
Sbjct: 235 attcattgttcaagccacaaggaactgaagatgatggccttgttcgggagtgtctcattg 294
Query: 181 acttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtg 240
||||||||||||||||||| |||||||| || || || | ||||| |||||||| ||||
Sbjct: 295 acttctacaccagttctggaaagagaaaaccagatcagatcatcatcttcagggatggtg 354
Query: 241 ttagcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggctt 300
||||||| || ||||||||||||||||||||||| || || | ||||| || ||||| |
Sbjct: 355 ttagcgagagccagtttaatcaggtgctgaacatcgaattagatcaaattattgaggcct 414
Query: 301 gcaaatttcttgatgagaaatggaatcccaagttcac 337
|||| || | ||||| || ||||| |||||||||||
Sbjct: 415 gcaagttcttggatgaaaattggaaccccaagttcac 451
>gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. vulgare cDNA clone HA10I02
3-PRIME, mRNA sequence
Length = 514
Score = 184 bits (93), Expect = 4e-045
Identities = 135/149 (90%)
Strand = Plus / Minus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatgacctgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagca 423
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|||||||| ||| |||| |||||||| |||||||| |||||||||||||| | ||||||
Sbjct: 422 atatcagttgtttctccaatctgctatgcacatcttgcagctgctcaggtggcgcagttc 363
Query: 660 ataaagttcgatgagatgtcggagacgtc 688
|||||||| ||||||||||| ||||||||
Sbjct: 362 ataaagtttgatgagatgtccgagacgtc 334
>gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K21
3-PRIME, mRNA sequence
Length = 584
Score = 184 bits (93), Expect = 4e-045
Identities = 162/185 (87%)
Strand = Plus / Minus
Query: 504 taccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcat 563
||||| |||||||||||||||||| ||| | ||||| |||||||| || ||||||
Sbjct: 579 taccatatcctgcatgatgagatacactttgccgcggatgacctgcaggatcttgtgcat 520
Query: 564 tcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgc 623
||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct: 519 tcgctctcttatgtgtaccaaaggagcacaacagcaatatcagttgtttctccaatctgc 460
Query: 624 tacgcacatctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggag 683
|| |||||||| |||||||||||||| | |||||||||||||| ||||||||||| |||
Sbjct: 459 tatgcacatcttgcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgag 400
Query: 684 acgtc 688
|||||
Sbjct: 399 acgtc 395
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 172 bits (87), Expect = 1e-041
Identities = 282/347 (81%)
Strand = Plus / Plus
Query: 31 ttgctgctgttgttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtcc 90
||||||| || || ||||||||||| |||||||| ||||| |||||||||||| | || |
Sbjct: 206 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcaacagtgc 265
Query: 91 gcacccaatcaccaaaaatggaaatgattgactcattgtttaagccacgggaagctgaag 150
||| || ||||| ||| ||| ||||| | |||||||||||| ||||||| | ||||||
Sbjct: 266 acactcagtcacccaaacaggagatgatggcctcattgtttaaaccacggggaactgaag 325
Query: 151 atgatggtctgatccgggagtgtctgattgacttctacaccagttctgggaagagaaagc 210
||||||| || || ||||| | || |||||||||||||| |||||||||||| | ||||
Sbjct: 326 atgatggcctcattcgggaatcacttattgacttctacactagttctgggaagcggaagc 385
Query: 211 ctgaccaagttatcatattcagggacggtgttagcgaaagtcagtttaatcaggtgctga 270
| ||||| |||||||| |||||||| || || |||||||| ||||||| |||||| | |
Sbjct: 386 cagaccaggttatcatcttcagggatggagtcagcgaaagccagtttacccaggtgataa 445
Query: 271 acattgagttgcaacaaatcatcgaggcttgcaaatttcttgatgagaaatggaatccca 330
|||| ||| | | || ||||||||||| ||||| | ||||| || || ||| | ||||
Sbjct: 446 acatcgagcttgagcagatcatcgaggcatgcaagtgccttgacgacaagtgggagccca 505
Query: 331 agttcacgttgattattgcccagaagaatcatcacactaaatttttc 377
||||||| | ||| |||| |||||||| |||||||| | |||||||
Sbjct: 506 agttcacagtcattgttgctcagaagaaccatcacaccagatttttc 552
Score = 73.8 bits (37), Expect = 1e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 564 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 623
Query: 449 cgatttctacatgtgtgcgcatgctggaatgat 481
|| ||||||||||||||||||||||| |||||
Sbjct: 624 tgacttctacatgtgtgcgcatgctgggatgat 656
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 147 bits (74), Expect = 8e-034
Identities = 319/400 (79%), Gaps = 3/400 (0%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 109 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 168
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 169 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 228
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | || || |||||
Sbjct: 229 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgct 288
Query: 569 ctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgc 628
|||||||||||||| |||||||| || || || ||||| | |||||| || |||||
Sbjct: 289 ttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctccaatagcgtacgc 348
Query: 629 acatctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||| || || ||||| ||| ||||| ||||| || || |||||||| || ||
Sbjct: 349 gcatctggcggcggcgcaggtgggcaccttcatgaagtttgaggacatgtcggacacttc 408
Query: 689 ctccagtcatggcggg---catacttcggcgggcagcgttccggtccaggagctgccgcg 745
|| || || || ||| || || |||| |||||||| |||| | ||||||||| ||
Sbjct: 409 gtcgagccagggagggggccacacgtcggtgggcagcgcctcggtgccggagctgcctcg 468
Query: 746 cctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 469 gctgcatgagaaagtgaggagctccatgttcttctgctga 508
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 135 bits (68), Expect = 3e-030
Identities = 251/312 (80%)
Strand = Plus / Plus
Query: 66 atctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgactca 125
||||| |||||||||||| | || | ||| || ||||| ||| ||| ||||| | ||||
Sbjct: 5 atctctaaatacagagcaacagtgcacactcagtcacccaaacaggagatgatggcctca 64
Query: 126 ttgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattgacttc 185
|||||||| ||||||| | ||||||||||||| || || || || | || |||||||||
Sbjct: 65 ttgtttaaaccacggggaactgaagatgatggcctcattcgcgaatcacttattgacttc 124
Query: 186 tacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtgttagc 245
||||| |||||||||||| | ||||| ||||| |||||||| |||||||| || || |||
Sbjct: 125 tacactagttctgggaagcggaagccagaccacgttatcatcttcagggatggagtcagc 184
Query: 246 gaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgcaaa 305
|||| ||||||| |||||| | ||||||||| | | || ||||||||||| |||||
Sbjct: 185 taaagccagtttacccaggtgataaacattgagcttgagcagatcatcgaggcatgcaag 244
Query: 306 tttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcatcac 365
| ||||| || || ||| | ||||||||||| | ||| |||| |||||||| ||||||
Sbjct: 245 tgccttgacgacaagtgggagcccaagttcacagtcattgttgctcagaagaaccatcac 304
Query: 366 actaaatttttc 377
|| | |||||||
Sbjct: 305 accagatttttc 316
Score = 127 bits (64), Expect = 8e-028
Identities = 169/204 (82%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 328 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 387
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 388 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 447
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | ||||| |||||
Sbjct: 448 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtgcactcgct 507
Query: 569 ctcttatgtgtaccaaaggagcac 592
|||||||||||||| ||||||||
Sbjct: 508 ttcttatgtgtaccagaggagcac 531
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 119 bits (60), Expect = 2e-025
Identities = 168/204 (82%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 165 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 224
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 225 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 284
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | || || |||||
Sbjct: 285 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgct 344
Query: 569 ctcttatgtgtaccaaaggagcac 592
|||||||||||||| ||||||||
Sbjct: 345 ttcttatgtgtaccagaggagcac 368
Score = 63.9 bits (32), Expect = 1e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 734 ggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||| || |||||||||||||||| |||||| |||||||| ||||||
Sbjct: 513 ggagctgcctcggctgcatgagaaagtgaagagctccatgttcttctgctga 564
Score = 52.0 bits (26), Expect = 4e-005
Identities = 119/150 (79%)
Strand = Plus / Plus
Query: 228 ttcagggacggtgttagcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaa 287
|||||||| || || |||||||| ||||||| |||||| | ||||| ||| | | ||
Sbjct: 4 ttcagggatggagtcagcgaaagccagtttacccaggtgataaacatcgagcttgagcag 63
Query: 288 atcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattatt 347
||||||||||| ||||| | ||||| || || ||| | ||||||||||| | ||| ||
Sbjct: 64 atcatcgaggcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgtt 123
Query: 348 gcccagaagaatcatcacactaaatttttc 377
|| |||||||| |||||||| | |||||||
Sbjct: 124 gctcagaagaaccatcacaccagatttttc 153
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 119 bits (60), Expect = 2e-025
Identities = 168/204 (82%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 250 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 309
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 310 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 369
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | || || |||||
Sbjct: 370 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgct 429
Query: 569 ctcttatgtgtaccaaaggagcac 592
|||||||||||||| ||||||||
Sbjct: 430 ttcttatgtgtaccagaggagcac 453
Score = 105 bits (53), Expect = 3e-021
Identities = 164/201 (81%)
Strand = Plus / Plus
Query: 177 attgacttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggac 236
|||||||||||||| |||||||||||| | ||||| ||||| |||||||| ||||||||
Sbjct: 38 attgacttctacactagttctgggaagcggaagccagaccaggttatcatcttcagggat 97
Query: 237 ggtgttagcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgag 296
|| || |||||||| ||||||| |||||| | ||||| ||| | | || |||||||||
Sbjct: 98 ggagtcagcgaaagccagtttacccaggtgataaacatcgagcttgagcagatcatcgag 157
Query: 297 gcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaag 356
|| ||||| | ||||| || || ||| | ||||||||||| | ||| |||| ||||||
Sbjct: 158 gcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgttgctcagaag 217
Query: 357 aatcatcacactaaatttttc 377
|| |||||||| | |||||||
Sbjct: 218 aaccatcacaccagatttttc 238
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 119 bits (60), Expect = 2e-025
Identities = 168/204 (82%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 156 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 215
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 216 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 275
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | || || |||||
Sbjct: 276 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgct 335
Query: 569 ctcttatgtgtaccaaaggagcac 592
|||||||||||||| ||||||||
Sbjct: 336 ttcttatgtgtaccagaggagcac 359
Score = 44.1 bits (22), Expect = 0.009
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 288 atcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattatt 347
||||||||||| ||||| | ||||| || || ||| | ||||||||||| | ||| ||
Sbjct: 55 atcatcgaggcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgtt 114
Query: 348 gcccagaagaatcatcacactaaatttttc 377
|| |||||||| |||||||| | |||||||
Sbjct: 115 gctcagaagaaccatcacaccagatttttc 144
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 119 bits (60), Expect = 2e-025
Identities = 168/204 (82%)
Strand = Plus / Plus
Query: 389 gccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaactt 448
|||||| ||||| || || || || |||||||| || |||| |||||||| ||||||||
Sbjct: 141 gccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaactt 200
Query: 449 cgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactacca 508
|| ||||||||||||||||||||||| ||||| || || |||||||||| || |||||
Sbjct: 201 tgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattacca 260
Query: 509 catcctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgct 568
| |||||||||||||| |||||||| | || || || |||||| | || || |||||
Sbjct: 261 tgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgct 320
Query: 569 ctcttatgtgtaccaaaggagcac 592
|||||||||||||| ||||||||
Sbjct: 321 ttcttatgtgtaccagaggagcac 344
Score = 44.1 bits (22), Expect = 0.009
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 288 atcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattatt 347
||||||||||| ||||| | ||||| || || ||| | ||||||||||| | ||| ||
Sbjct: 40 atcatcgaggcatgcaagtgccttgacgacaagtgggagcccaagttcacagtcattgtt 99
Query: 348 gcccagaagaatcatcacactaaatttttc 377
|| |||||||| |||||||| | |||||||
Sbjct: 100 gctcagaagaaccatcacaccagatttttc 129
>gb|BU971696.1|BU971696 HB19G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB19G05
5-PRIME, mRNA sequence
Length = 644
Score = 117 bits (59), Expect = 8e-025
Identities = 164/199 (82%)
Strand = Plus / Plus
Query: 1 gatctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggc 60
|||| |||||||| |||||| |||| || |||| || |||||| ||||||| |||||||
Sbjct: 446 gatcccctggacagtctgatataccatccattgcagcagttgttggttctcgagaatggc 505
Query: 61 ctcttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattg 120
| ||| |||||||||| || || || || ||| | || |||||||| | |||||||| |
Sbjct: 506 cccttgtctcgaaatatagggcttcagtgcgctcgcagtcaccaaagctagaaatgatag 565
Query: 121 actcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattg 180
| |||||||| ||||||| | | ||||||||||||| || | ||||||||||| ||||
Sbjct: 566 attcattgttcaagccacaaggaactgaagatgatggccttgttcgggagtgtctcattg 625
Query: 181 acttctacaccagttctgg 199
|||||||||||||||||||
Sbjct: 626 acttctacaccagttctgg 644
>gb|BU998822.1|BU998822 HI12E07r HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
5-PRIME, mRNA sequence
Length = 556
Score = 113 bits (57), Expect = 1e-023
Identities = 144/173 (83%)
Strand = Plus / Plus
Query: 31 ttgctgctgttgttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtcc 90
||||||| || || ||||||||||| |||||||| ||||| |||||||||||| | || |
Sbjct: 381 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcaacagtgc 440
Query: 91 gcacccaatcaccaaaaatggaaatgattgactcattgtttaagccacgggaagctgaag 150
||| || ||||| ||| ||| ||||| | |||||||||||| ||||||| | ||||||
Sbjct: 441 acactcagtcacccaaacaggagatgatggcctcattgtttaaaccacggggaactgaag 500
Query: 151 atgatggtctgatccgggagtgtctgattgacttctacaccagttctgggaag 203
||||||| || || ||||| | || |||||||||||||| ||||||||||||
Sbjct: 501 atgatggcctcattcgggaatcacttattgacttctacactagttctgggaag 553
>gb|CD663310.1|CD663310 UCRHV18_05ad02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ad02, mRNA sequence
Length = 537
Score = 99.6 bits (50), Expect = 2e-019
Identities = 110/130 (84%)
Strand = Plus / Minus
Query: 558 gtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctccc 617
||||||||||| | |||||||| |||||||||| ||||||| |||||||| ||| |||
Sbjct: 520 gtgcattcgcttttttatgtgttccaaaggagcccaacagcaatatcagttgtttttcca 461
Query: 618 atctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgagatg 677
|| || || |||||| | ||| |||||||||| || ||||||||||| || |||||||||
Sbjct: 460 atttggtatgcacattttgcaactgctcaggtggggcagttcataaaatttgatgagatg 401
Query: 678 tcggagacgt 687
|| |||||||
Sbjct: 400 tccgagacgt 391
>gb|BE194563.1|BE194563 HVSMEh0086A12f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0086A12f, mRNA sequence
Length = 841
Score = 81.8 bits (41), Expect = 4e-014
Identities = 141/173 (81%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 31 ttgctgctgttgttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtcc 90
||||||| || || ||||||||||| |||||||| ||||| |||||||||||||| || |
Sbjct: 373 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcatcagtgc 432
Query: 91 gcacccaatcaccaaaaatggaaatgattgactcattgtttaagccacgggaagctgaag 150
||| || ||||| ||| || ||||| | |||||||||||| || |||| | ||||||
Sbjct: 433 acactcagtcacccaaacacgagatgatggcctcattgtttaa-ccccggggaactgaag 491
Query: 151 atgatggtctgatccgggagtgtctgattgacttctacaccagttctgggaag 203
||||||| || || ||||| | || |||||||||| ||| | ||||||||||
Sbjct: 492 atgatggcctcattcgggaatcacttattgacttctccactacttctgggaag 544
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 79.8 bits (40), Expect = 2e-013
Identities = 216/274 (78%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 515 gcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctctta 574
|||||||||||| |||||||| | || || || |||||| | || || ||||| |||||
Sbjct: 669 gcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcgctttctta 610
Query: 575 tgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatct 634
||||||||| |||||||| || || || ||||| | |||||| || ||||| |||||
Sbjct: 609 tgtgtaccagaggagcacgacggcgatttcagtagctgctccaatagcgtacgcgcatct 550
Query: 635 ggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctccag 694
||| || || ||||| ||| ||||| ||||| || || |||||||| || || || ||
Sbjct: 549 ggcggcggcgcaggtgggcaccttcatgaagtttgaggacatgtcggacacttcgtcgag 490
Query: 695 tcatggcggg---catacttcggcgggcagcgttccggtccaggagctgccgcgcctgca 751
|| || ||| || || |||| |||||||| |||| | ||||||||| || |||||
Sbjct: 489 ccagggagggggccacacgtcggtgggcagcgcctcggtgccggagctgcctcggctgca 430
Query: 752 tgagaaagtgaggagctcgatgttcttttgctga 785
|||||||||||||||||| |||||||| ||||||
Sbjct: 429 tgagaaagtgaggagctccatgttcttctgctga 396
>gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019K06f, mRNA sequence
Length = 816
Score = 75.8 bits (38), Expect = 3e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 627 gcacatctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacg 686
|||||||| |||||||||||||| | |||||||||||||| ||||||||||| ||||||
Sbjct: 1 gcacatcttgcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacg 60
Query: 687 tc 688
||
Sbjct: 61 tc 62
>gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_D09 5', mRNA sequence
Length = 391
Score = 75.8 bits (38), Expect = 3e-012
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 627 gcacatctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacg 686
|||||||| |||||||||||||| | |||||||||||||| ||||||||||| ||||||
Sbjct: 1 gcacatcttgcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacg 60
Query: 687 tc 688
||
Sbjct: 61 tc 62
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 734 ggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 416 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 365
>gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_N14 5', mRNA sequence
Length = 453
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 734 ggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 4 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 55
>gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. vulgare cDNA clone HS17L21
3-PRIME, mRNA sequence
Length = 574
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 734 ggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 432 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 381
>gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
3-PRIME, mRNA sequence
Length = 521
Score = 71.9 bits (36), Expect = 4e-011
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 734 ggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 432 ggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgctga 381
>gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J11u 3',
mRNA sequence
Length = 469
Score = 65.9 bits (33), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 636 gcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtc 688
|||||||||||||| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 469 gcagctgctcaggtggcgcagttcataaagtttgatgagatgtccgagacgtc 417
>gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17o03 3', mRNA sequence
Length = 524
Score = 61.9 bits (31), Expect = 4e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 747 ctgcatgagaaagtgaggagctcgatgttcttttgctga 785
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 522 ctgcatgagaaagtgaggagctccatgttcttctgctga 484
>gb|BQ464032.1|BQ464032 HF01C16T HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
5-PRIME, mRNA sequence
Length = 663
Score = 61.9 bits (31), Expect = 4e-008
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 31 ttgctgctgttgttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtcc 90
||||||| || || ||||||||||| |||||||| ||||| |||||||||||| | || |
Sbjct: 558 ttgctgcggtggtgagttctcgtgagtggcctctcatctctaaatacagagcaacagtgc 617
Query: 91 gcacccaatcaccaaaaatggaaatgattgactcattgtttaa 133
||| || ||||| ||| ||| ||||| | ||||||||||||
Sbjct: 618 acactcagtcacccaaacaggagatgatggcctcattgtttaa 660
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 6e-004
Identities = 87/108 (80%)
Strand = Plus / Plus
Query: 563 ttcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctg 622
|||||| || ||||||||||| |||||||| || || ||||| || || || || |||||
Sbjct: 306 ttcgctttcctatgtgtaccagaggagcaccactgcaatatctgtggtggcacctatctg 365
Query: 623 ctacgcacatctggcagctgctcaggttggccagttcataaagttcga 670
||||| || || ||||| || ||| | ||||||||||||| |||||
Sbjct: 366 ttacgcgcaccttgcagcagcgcagatgagccagttcataaaattcga 413
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,480
Number of Sequences: 312970
Number of extensions: 87480
Number of successful extensions: 24697
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24556
Number of HSP's gapped (non-prelim): 130
length of query: 1028
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1009
effective length of database: 169,188,109
effective search space: 170710801981
effective search space used: 170710801981
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)