BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404725.2.2
         (910 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL507501.1|AL507501  AL507501 Hordeum vulgare Barke devel...    42   0.031
gb|CB880586.1|CB880586  HM06P22w HM Hordeum vulgare subsp. v...    40   0.12 
gb|BM442103.2|BM442103  EBan01_SQ002_D11_R anther, yellow st...    38   0.49 

>gb|AL507501.1|AL507501 AL507501 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
           Hordeum vulgare subsp. vulgare cDNA clone HY06A03V 5',
           mRNA sequence
          Length = 664

 Score = 42.1 bits (21), Expect = 0.031
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 406 cgaccttgccgcagcggaggctggt 430
           |||||||||||| ||||||||||||
Sbjct: 398 cgaccttgccgccgcggaggctggt 374



>gb|CB880586.1|CB880586 HM06P22w HM Hordeum vulgare subsp. vulgare cDNA clone HM06P22
           3-PRIME, mRNA sequence
          Length = 655

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 gtgttatgcatgcatgcatg 181
           ||||||||||||||||||||
Sbjct: 627 gtgttatgcatgcatgcatg 646



>gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow stage, no treatment, cv Optic,
           EBan01 Hordeum vulgare subsp. vulgare cDNA clone
           EBan01_SQ002_D11 5', mRNA sequence
          Length = 676

 Score = 38.2 bits (19), Expect = 0.49
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 711 tcgatgctcttctcggggttctc 733
           ||||||||| |||||||||||||
Sbjct: 657 tcgatgctcctctcggggttctc 635



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,954
Number of Sequences: 312970
Number of extensions: 83954
Number of successful extensions: 23443
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23432
Number of HSP's gapped (non-prelim): 11
length of query: 910
length of database: 175,134,539
effective HSP length: 19
effective length of query: 891
effective length of database: 169,188,109
effective search space: 150746605119
effective search space used: 150746605119
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)