BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.4
(806 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 232 1e-059
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 232 1e-059
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 232 1e-059
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 232 1e-059
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 232 1e-059
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 232 1e-059
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 232 1e-059
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 232 1e-059
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 232 1e-059
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 232 1e-059
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 232 1e-059
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 232 1e-059
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 232 1e-059
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 232 1e-059
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 232 1e-059
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 232 1e-059
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 226 9e-058
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 224 3e-057
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 224 3e-057
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 224 3e-057
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 222 1e-056
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 222 1e-056
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 218 2e-055
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 214 3e-054
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 210 5e-053
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 206 8e-052
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 204 3e-051
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 204 3e-051
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 194 3e-048
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 186 8e-046
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 184 3e-045
gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA li... 178 2e-043
gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subs... 161 4e-038
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 157 7e-037
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 157 7e-037
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 155 3e-036
gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA li... 155 3e-036
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 155 3e-036
gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthe... 153 1e-035
gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA li... 151 4e-035
gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA li... 147 7e-034
gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. v... 143 1e-032
gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA li... 141 4e-032
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 141 4e-032
gb|CA027495.1|CA027495 HZ59B20r HZ Hordeum vulgare subsp. v... 141 4e-032
gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. v... 141 4e-032
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 139 2e-031
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 139 2e-031
gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-a... 133 1e-029
gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Libr... 129 2e-028
gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA li... 129 2e-028
gb|AL509490.1|AL509490 AL509490 Hordeum vulgare Barke devel... 123 9e-027
gb|BQ759428.1|BQ759428 EBpi01_SQ004_B14_R pistil, 1 DPA, no... 119 1e-025
gb|AL502045.1|AL502045 AL502045 Hordeum vulgare Barke roots... 115 2e-024
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 111 4e-023
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 107 6e-022
gb|CA024997.1|CA024997 HZ50O20r HZ Hordeum vulgare subsp. v... 105 2e-021
gb|BJ466129.1|BJ466129 BJ466129 K. Sato unpublished cDNA li... 103 9e-021
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 98 5e-019
gb|AV919354.1|AV919354 AV919354 K. Sato unpublished cDNA li... 96 2e-018
gb|AV921614.1|AV921614 AV921614 K. Sato unpublished cDNA li... 96 2e-018
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 94 8e-018
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 92 3e-017
gb|AV921085.1|AV921085 AV921085 K. Sato unpublished cDNA li... 86 2e-015
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 86 2e-015
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 84 8e-015
gb|AJ462184.1|AJ462184 AJ462184 S00002 Hordeum vulgare subs... 80 1e-013
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 78 5e-013
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 58 5e-007
gb|BJ466941.1|BJ466941 BJ466941 K. Sato unpublished cDNA li... 52 3e-005
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 50 1e-004
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 50 1e-004
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 50 1e-004
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 50 1e-004
gb|BE601859.2|BE601859 HVSMEh0099M17f Hordeum vulgare 5-45 ... 50 1e-004
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 50 1e-004
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 50 1e-004
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 50 1e-004
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 50 1e-004
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 50 1e-004
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 50 1e-004
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 50 1e-004
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 50 1e-004
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 50 1e-004
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 50 1e-004
gb|BQ663387.1|BQ663387 HU02G21u HU Hordeum vulgare subsp. v... 50 1e-004
gb|BM441741.2|BM441741 EBed07_SQ001_G19_R endosperm, 28 DPA... 50 1e-004
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 50 1e-004
gb|BQ756989.1|BQ756989 EBem10_SQ002_G20_R embryo, 2 Day ger... 50 1e-004
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 50 1e-004
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 50 1e-004
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 50 1e-004
gb|CA010249.1|CA010249 HT11B14u HT Hordeum vulgare subsp. v... 50 1e-004
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 50 1e-004
gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA li... 48 5e-004
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 48 5e-004
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 48 5e-004
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 48 5e-004
gb|BM441944.2|BM441944 EBed07_SQ001_P23_R endosperm, 28 DPA... 46 0.002
gb|BQ466327.1|BQ466327 HT02D14r HT Hordeum vulgare subsp. v... 44 0.007
gb|BU989213.1|BU989213 HF21B21r HF Hordeum vulgare subsp. v... 44 0.007
gb|CV053661.1|CV053661 BNEL101g2 Barley EST endosperm libra... 42 0.028
gb|BE437689.1|BE437689 SFR006.D12F990705 ITEC SFR Barley Le... 38 0.43
gb|AL500107.1|AL500107 AL500107 Hordeum vulgare Barke etiol... 38 0.43
gb|BF623927.2|BF623927 HVSMEa0007M14f Hordeum vulgare seedl... 38 0.43
gb|BF629833.2|BF629833 HVSMEb0007A10f Hordeum vulgare seedl... 38 0.43
gb|BG343059.1|BG343059 HVSMEg0001O05f Hordeum vulgare pre-a... 38 0.43
gb|BI948933.1|BI948933 HVSMEl0011I20f Hordeum vulgare spike... 38 0.43
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 38 0.43
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 136 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 195
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 196 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 255
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 256 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 315
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 316 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 375
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 376 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 435
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 436 tcgtccaagttcggcatcgtctacgtcgacttcaaca 472
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 560 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 501
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 500 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 441
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 440 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 381
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 380 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 321
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 320 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 261
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 260 tcgtccaagttcggcatcgtctacgtcgacttcaaca 224
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 529 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 470
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 469 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 410
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 409 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 350
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 349 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 290
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 289 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 229 tcgtccaagttcggcatcgtctacgtcgacttcaaca 193
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 555 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 496
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 495 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 436
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 435 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 376
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 375 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 316
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 315 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 256
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 255 tcgtccaagttcggcatcgtctacgtcgacttcaaca 219
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 549 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 490
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 489 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 430
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 429 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 370
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 369 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 310
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 309 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 250
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 249 tcgtccaagttcggcatcgtctacgtcgacttcaaca 213
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 555 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 496
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 495 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 436
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 435 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 376
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 375 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 316
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 315 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 256
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 255 tcgtccaagttcggcatcgtctacgtcgacttcaaca 219
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 541 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 482
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 481 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 422
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 421 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 362
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 361 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 302
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 301 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 242
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 241 tcgtccaagttcggcatcgtctacgtcgacttcaaca 205
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 547 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 488
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 487 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 428
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 427 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 368
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 367 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 308
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 307 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 248
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 247 tcgtccaagttcggcatcgtctacgtcgacttcaaca 211
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 550 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 491
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 490 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 431
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 430 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 371
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 370 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 311
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 310 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 250 tcgtccaagttcggcatcgtctacgtcgacttcaaca 214
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 528 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 469
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 468 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 409
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 408 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 349
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 348 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 289
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 288 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 229
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 228 tcgtccaagttcggcatcgtctacgtcgacttcaaca 192
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 550 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 491
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 490 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 431
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 430 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 371
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 370 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 311
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 310 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 250 tcgtccaagttcggcatcgtctacgtcgacttcaaca 214
>gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 3', mRNA sequence
Length = 632
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 529 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 470
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 469 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 410
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 409 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 350
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 349 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 290
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 289 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 229 tcgtccaagttcggcatcgtctacgtcgacttcaaca 193
>gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 3', mRNA sequence
Length = 653
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 524 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 465
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 464 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 405
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 404 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 345
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 344 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 285
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 284 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 225
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 224 tcgtccaagttcggcatcgtctacgtcgacttcaaca 188
>gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 3', mRNA sequence
Length = 712
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 546 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 487
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 486 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 427
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 426 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 367
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 366 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 307
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 306 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 247
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 246 tcgtccaagttcggcatcgtctacgtcgacttcaaca 210
>gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 3', mRNA sequence
Length = 688
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 529 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 470
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 469 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 410
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 409 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 350
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 349 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 290
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 289 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 230
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 229 tcgtccaagttcggcatcgtctacgtcgacttcaaca 193
>gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_L04 5', mRNA sequence
Length = 487
Score = 232 bits (117), Expect = 1e-059
Identities = 282/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 17 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 76
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 77 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 136
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 137 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 196
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 197 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 256
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 257 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 316
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 317 tcgtccaagttcggcatcgtctacgtcgacttcaaca 353
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 226 bits (114), Expect = 9e-058
Identities = 281/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 130 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 189
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 190 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 249
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 250 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 309
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 310 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 369
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| ||| |||||||||||||||| |||||| || | || |||
Sbjct: 370 aacgttctcggctacttcgcgtggnctctcctcgacaactttgagtggatgtccggctac 429
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 430 tcgtccaagttcggcatcgtctacgtcgacttcaaca 466
>gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. vulgare cDNA clone HB22E11
5-PRIME, mRNA sequence
Length = 591
Score = 224 bits (113), Expect = 3e-057
Identities = 281/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 217 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 276
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 277 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 336
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 337 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 396
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 397 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 456
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 457 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 516
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 517 tcgtccaagttcggcatcgtctacgtcgacttcaaca 553
>gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61C14
5-PRIME, mRNA sequence
Length = 608
Score = 224 bits (113), Expect = 3e-057
Identities = 281/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 36 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 95
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 96 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 155
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 156 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 215
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 216 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 275
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 276 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 335
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 336 tcgtccaagttcggcatcgtctacgtcgacttcaaca 372
>gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
3-PRIME, mRNA sequence
Length = 642
Score = 224 bits (113), Expect = 3e-057
Identities = 281/337 (83%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 550 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 491
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 490 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 431
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 430 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 371
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 370 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 311
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 310 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 251
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||||||||||||||||||||||||| ||||||||||
Sbjct: 250 tcgtccaagttcggcatcgtctacgtcgacttcaaca 214
>gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 3', mRNA sequence
Length = 523
Score = 222 bits (112), Expect = 1e-056
Identities = 274/328 (83%)
Strand = Plus / Minus
Query: 102 ccgattggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacggg 161
|||||||||||| |||||||||| || ||||||||||||| ||| |||||||||| |||
Sbjct: 520 ccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcggggatgtatggg 461
Query: 162 tgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacgga 221
|||||| ||||||||| ||||||| ||||| || ||||| |||||| || ||||||
Sbjct: 460 tgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataactgaaaacgga 401
Query: 222 atggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcgg 281
||||| ||||| || | || || |||||||||||||| ||| | |||||||| |||
Sbjct: 400 atggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacgagggtccgg 341
Query: 282 ttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggct 341
|||||| |||||||| || || |||||||||||||||| ||| || || |||||
Sbjct: 340 ttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgccaacgttctc 281
Query: 342 ggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaag 401
||||||||||| |||||||||||||||||||| |||||| || | || ||||||||||||
Sbjct: 280 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 221
Query: 402 ttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||| ||||||||||
Sbjct: 220 ttcggcatcgtctacgtcgacttcaaca 193
>gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
5-PRIME, mRNA sequence
Length = 578
Score = 222 bits (112), Expect = 1e-056
Identities = 280/336 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 243 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 302
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 303 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 362
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 363 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 422
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 423 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 482
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 483 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 542
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaac 428
|||||||||||||||||||||||||| |||||||||
Sbjct: 543 tcgtccaagttcggcatcgtctacgtcgacttcaac 578
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 218 bits (110), Expect = 2e-055
Identities = 280/337 (83%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 370 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 429
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 430 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 489
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 490 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 549
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 550 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 609
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtac 392
||||| ||||||||||| |||||||||||||||||||| |||||| || | || |||
Sbjct: 610 aacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctac 669
Query: 393 tcgtccaagttcggcatcgtctacgtggacttcaaca 429
|||| ||||||||||||||||||||| ||||||||||
Sbjct: 670 tcgtncaagttcggcatcgtctacgtcgacttcaaca 706
>gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_D19 5', mRNA sequence
Length = 480
Score = 214 bits (108), Expect = 3e-054
Identities = 281/338 (83%), Gaps = 1/338 (0%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 138 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 197
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 198 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 257
Query: 213 gagaacggaatgga-ccagcctggaaacttgacccgagaccagtacctgcgcgacgccac 271
|| ||||||||||| | |||| || | || || |||||||||||||| ||| | ||
Sbjct: 258 gaaaacggaatggatcnagccgggggggctcacgcgcgaccagtacctgcgggacacgac 317
Query: 272 gagggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagc 331
|||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 318 gagggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgc 377
Query: 332 gaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggta 391
||||| ||||||||||| |||||||||||| ||||||| |||||| || | || ||
Sbjct: 378 caacgttctcggctacttcgcgtggtctctcctcnacaactttgagtggatgtccggcta 437
Query: 392 ctcgtccaagttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 ctcgtccaagttcggcatcgtctacgtcgacttcaaca 475
>gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A13
3-PRIME, mRNA sequence
Length = 680
Score = 210 bits (106), Expect = 5e-053
Identities = 281/338 (83%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 582 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 523
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 522 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 463
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 462 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 403
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 402 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 343
Query: 333 aacgtggctggctacttcgcctggtctctcc-tcgacaacttcgagtggctggcagggta 391
||||| ||||||||||| |||||||||| |||||||||| |||||| || | || ||
Sbjct: 342 aacgttctcggctacttcgcgtggtctctccctcgacaactttgagtggatgtccggcta 283
Query: 392 ctcgtccaagttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||||||||||||| ||||||||||
Sbjct: 282 ctcgtccaagttcggcatcgtctacgtcgacttcaaca 245
>gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. vulgare cDNA clone HM03J01
3-PRIME, mRNA sequence
Length = 561
Score = 206 bits (104), Expect = 8e-052
Identities = 272/328 (82%)
Strand = Plus / Minus
Query: 102 ccgattggaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacggg 161
|||||||| ||| |||||||||| || ||||||||||||| ||| |||||||||| |||
Sbjct: 561 ccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcggggatgtatggg 502
Query: 162 tgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacggagaacgga 221
|||||| ||||||||| ||||||| ||||| || ||||| |||||| || ||||||
Sbjct: 501 tgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataactgaaaacgga 442
Query: 222 atggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcgg 281
||||| ||||| || | || || |||||||||||||| ||| | |||||||| |||
Sbjct: 441 atggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacgagggtccgg 382
Query: 282 ttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggct 341
|||||| |||||||| || || |||||||||||||||| ||| || || |||||
Sbjct: 381 ttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgccaacgttctc 322
Query: 342 ggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaag 401
||||||||||| |||||||||||||||||||| |||||| || | || ||||||||||||
Sbjct: 321 ggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaag 262
Query: 402 ttcggcatcgtctacgtggacttcaaca 429
||||||||||| ||||| ||||||||||
Sbjct: 261 ttcggcatcgtttacgtcgacttcaaca 234
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 204 bits (103), Expect = 3e-051
Identities = 262/315 (83%)
Strand = Plus / Plus
Query: 115 aggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacc 174
|||||||||| || ||||||||||||| ||| |||||||||| ||||||||| ||||||
Sbjct: 16 aggcgaattcgaactggctctacatcgtcccatcggggatgtatgggtgcgtgcactacc 75
Query: 175 tcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcctg 234
||| ||||||| ||||| || ||||| |||||| || ||||||||||| ||||| |
Sbjct: 76 tcagccagaagtacgggaacccgccgatcgtcataactgaaaacggaatggatcagccgg 135
Query: 235 gaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagct 294
| | || || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 136 gggggctcacgcgcgaccagtacctgcgggacacgacgagggtccggttctaccggagct 195
Query: 295 acatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcct 354
|| || || |||||||||||||||| ||| || || ||||| ||||||||||| |
Sbjct: 196 acctcagcgagctgaagaaggccatcgacggtggcgccaacgttctcggctacttcgcgt 255
Query: 355 ggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtct 414
||||||||||||||||||| |||||| || | || |||||||||||||||||||||||||
Sbjct: 256 ggtctctcctcgacaactttgagtggatgtccggctactcgtccaagttcggcatcgtct 315
Query: 415 acgtggacttcaaca 429
|||| ||||||||||
Sbjct: 316 acgtcgacttcaaca 330
>gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 3', mRNA sequence
Length = 537
Score = 204 bits (103), Expect = 3e-051
Identities = 262/315 (83%)
Strand = Plus / Minus
Query: 115 aggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtgaactacc 174
|||||||||| || ||||||||||||| ||| |||||||||| ||||||||| ||||||
Sbjct: 534 aggcgaattcgaactggctctacatcgtcccatcggggatgtatgggtgcgtgcactacc 475
Query: 175 tcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggaccagcctg 234
||| ||||||| ||||| || ||||| |||||| || ||||||||||| ||||| |
Sbjct: 474 tcagccagaagtacgggaacccgccgatcgtcataactgaaaacggaatggatcagccgg 415
Query: 235 gaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctacaggagct 294
| | || || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 414 gggggctcacgcgcgaccagtacctgcgggacacgacgagggtccggttctaccggagct 355
Query: 295 acatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcct 354
|| || || |||||||||||||||| ||| || || ||||| ||||||||||| |
Sbjct: 354 acctcagcgagctgaagaaggccatcgacggtggcgccaacgttctcggctacttcgcgt 295
Query: 355 ggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtct 414
||||||||||||||||||| |||||| || | || |||||||||||||||||||||||||
Sbjct: 294 ggtctctcctcgacaactttgagtggatgtccggctactcgtccaagttcggcatcgtct 235
Query: 415 acgtggacttcaaca 429
|||| ||||||||||
Sbjct: 234 acgtcgacttcaaca 220
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 194 bits (98), Expect = 3e-048
Identities = 279/338 (82%), Gaps = 1/338 (0%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 283 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 342
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 343 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 402
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 403 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 462
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| | | |||||||||||||||| ||| || ||
Sbjct: 463 agggtccggttctaccggagctaccttatcgagctgaagaaggccatcgacagtggcgcc 522
Query: 333 aacgtggctggctac-ttcgcctggtctctcctcgacaacttcgagtggctggcagggta 391
||||| |||| | ||||| ||||||| ||||||||||| |||||| |||| || ||
Sbjct: 523 aacgttctcggcttctttcgcggggtctcttctcgacaactttgagtggatggccggcta 582
Query: 392 ctcgtccaagttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctcgtccaagttcggcatcgtctacgtggacttcaaca 620
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 441 cacccgaaggcgtcggcctactggtt 466
||||| ||||||||||||||||||||
Sbjct: 639 caccccaaggcgtcggcctactggtt 664
>gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.D12, mRNA sequence
Length = 1134
Score = 186 bits (94), Expect = 8e-046
Identities = 278/338 (82%), Gaps = 1/338 (0%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 59 aatggcatgccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 118
Query: 153 atgtacgggt-gcgtgaactacctcaaggagaagtatgggaatccaacgatctacataac 211
|||| || | ||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 119 atgtttggtttgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataac 178
Query: 212 ggagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccac 271
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | ||
Sbjct: 179 tgaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgac 238
Query: 272 gagggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagc 331
|||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 239 gagggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgc 298
Query: 332 gaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggta 391
||||| ||||||||||| |||||||||||||||||||| |||||| || | || ||
Sbjct: 299 caacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggcta 358
Query: 392 ctcgtccaagttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||||||||||||| ||||||||||
Sbjct: 359 ctcgtccaagttcggcatcgtctacgtcgacttcaaca 396
>gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O09 5', mRNA sequence
Length = 455
Score = 184 bits (93), Expect = 3e-045
Identities = 264/321 (82%)
Strand = Plus / Plus
Query: 109 gaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtga 168
||||| |||||||||| || ||||||||||||| ||| |||||||||| |||||||||
Sbjct: 1 gaccaaaggcgaattcgaactggctctacatcgtcccatcggggatgtatgggtgcgtgc 60
Query: 169 actacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaatggacc 228
||||||||| ||||||| ||||| || ||||| |||||| || ||||||||||| |
Sbjct: 61 actacctcagccagaagtacgggaacccgccgatcgtcataactgaaaacggaatggatc 120
Query: 229 agcctggaaacttgacccgagaccagtacctgcgcgacgccacgagggtgcggttctaca 288
|||| | | || || |||||||||||||| ||| | |||||||| |||||||||
Sbjct: 121 agccggtggggctcacgcgcgaccagtacctgcgggacacgacgagggtccggttctacc 180
Query: 289 ggagctacatcggccagctgaagaaggccatagaccagggagcgaacgtggctggctact 348
|||||||| || || ||||||| || ||||| ||| || || ||||| |||||||
Sbjct: 181 ggagctacctcagcgagctgaataatgccatcgacggtggcgccaacgttctcggctact 240
Query: 349 tcgcctggtctctcctcgacaacttcgagtggctggcagggtactcgtccaagttcggca 408
|||| |||||||||||||||||||| |||||| || | || |||||||||||||||||||
Sbjct: 241 tcgcgtggtctctcctcgacaactttgagtggatgtccggctactcgtccaagttcggca 300
Query: 409 tcgtctacgtggacttcaaca 429
|||||||||| ||||||||||
Sbjct: 301 tcgtctacgtcgacttcaaca 321
>gb|AV921892.1|AV921892 AV921892 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 3', mRNA sequence
Length = 503
Score = 178 bits (90), Expect = 2e-043
Identities = 234/282 (82%)
Strand = Plus / Minus
Query: 148 cggggatgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctaca 207
|||||||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||
Sbjct: 495 cggggatgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtca 436
Query: 208 taacggagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacg 267
|||| || ||||||||||| ||||| || | || || |||||||||||||| |||
Sbjct: 435 taactgaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggaca 376
Query: 268 ccacgagggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagg 327
| |||||||| ||||||||| |||||||| || || |||||||||||||||| ||| |
Sbjct: 375 cgacgagggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtg 316
Query: 328 gagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcag 387
| || ||||| ||||||||||| |||||||||||||||||||| |||||| || | |
Sbjct: 315 gcgccaacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccg 256
Query: 388 ggtactcgtccaagttcggcatcgtctacgtggacttcaaca 429
| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 gctactcgtccaagttcggcatcgtctacgtcgacttcaaca 214
>gb|AJ433290.1|AJ433290 AJ433290 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200085B05F1, mRNA sequence
Length = 343
Score = 161 bits (81), Expect = 4e-038
Identities = 156/181 (86%)
Strand = Plus / Plus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
|||||||||||||| ||| | |||||||| ||||||||| |||||||| || || |||||
Sbjct: 58 gaccagtacctgcgggacacgacgagggtccggttctaccggagctacctcagcgagctg 117
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 118 aagaaggccatcgacggtggcgccaacgttctcggctacttcgcgtggtctctcctcgac 177
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||| |||||| || | || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 178 aactttgagtggatgtccggctactcgtccaagttcggcatcgtctacgtcgacttcaac 237
Query: 429 a 429
|
Sbjct: 238 a 238
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 157 bits (79), Expect = 7e-037
Identities = 217/263 (82%)
Strand = Plus / Minus
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || || | ||| ||||||| || ||| ||||| ||||||| |||||
Sbjct: 320 aacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagg 261
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| |||||||| || |||| ||| | ||||||||||||| || ||| | || ||||||
Sbjct: 260 gtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaac 201
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
|||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| |
Sbjct: 200 gtggtcggctacttcgcctggtccctcctcgacaacttcgagtggctgtcgggctacacc 141
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
||||||||||||||||| ||||| ||||||| ||| ||| | || |||| |||| |||
Sbjct: 140 tccaagttcggcatcgtgtacgtcgacttcaccaccctcaagcggtacccaaaggactcg 81
Query: 456 gcctactggttcagggacatgct 478
||||||||||||| | |||||||
Sbjct: 80 gcctactggttcaagaacatgct 58
>gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL114f9 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 714
Score = 157 bits (79), Expect = 7e-037
Identities = 217/263 (82%)
Strand = Plus / Plus
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || || | ||| ||||||| || ||| ||||| ||||||| |||||
Sbjct: 24 aacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagg 83
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| |||||||| || |||| ||| | ||||||||||||| || ||| | || ||||||
Sbjct: 84 gtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaac 143
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
|||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| |
Sbjct: 144 gtggtcggctacttcgcctggtccctcctcgacaacttcgagtggctgtcgggctacacc 203
Query: 396 tccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaaggcgtcg 455
||||||||||||||||| ||||| ||||||| ||| ||| | || |||| |||| |||
Sbjct: 204 tccaagttcggcatcgtgtacgtcgacttcaccaccctcaagcggtacccaaaggactcg 263
Query: 456 gcctactggttcagggacatgct 478
||||||||||||| | |||||||
Sbjct: 264 gcctactggttcaagaacatgct 286
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 155 bits (78), Expect = 3e-036
Identities = 230/281 (81%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 452 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 511
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 512 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 571
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||| | || | || || |||||||||||||| ||| | |||
Sbjct: 572 gaaaacggaatggatcagnccggggggctcacgcgcgaccagtacctgcgggacacgacg 631
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcg 332
||||| ||||||||| |||||||| || || |||||||||||||||| ||| || ||
Sbjct: 632 agggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggcgcc 691
Query: 333 aacgtggctggctacttcgcctggtctctcctcgacaactt 373
||||| ||||||||||| |||||||| |||||||||||
Sbjct: 692 aacgttctcggctacttcgcgtggtctcttctcgacaactt 732
>gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 5', mRNA sequence
Length = 547
Score = 155 bits (78), Expect = 3e-036
Identities = 186/222 (83%)
Strand = Plus / Plus
Query: 257 cctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggc 316
||||| ||||||| ||||||| |||||||| || |||| ||| | |||||||||||||
Sbjct: 29 cctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgagctgaagaaggc 88
Query: 317 catagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcga 376
|| ||| | || |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 89 gatcgacgacggcgcgaacgtggtcggctacttcgcctggtccctcctcgacaacttcga 148
Query: 377 gtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcga 436
||||||| | || ||| | ||||||||||||||||| ||||| ||||||| ||| ||| |
Sbjct: 149 gtggctgtcgggctacacctccaagttcggcatcgtgtacgtcgacttcaccaccctcaa 208
Query: 437 acgccacccgaaggcgtcggcctactggttcagggacatgct 478
|| |||| |||| |||||||||||||||| | |||||||
Sbjct: 209 gcggtacccaaaggactcggcctactggttcaagaacatgct 250
>gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_E17 5', mRNA sequence
Length = 436
Score = 155 bits (78), Expect = 3e-036
Identities = 186/222 (83%)
Strand = Plus / Plus
Query: 257 cctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggc 316
||||| ||||||| ||||||| |||||||| || |||| ||| | |||||||||||||
Sbjct: 33 cctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgagctgaagaaggc 92
Query: 317 catagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcga 376
|| ||| | || |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 93 gatcgacgacggcgcgaacgtggtcggctacttcgcctggtccctcctcgacaacttcga 152
Query: 377 gtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcga 436
||||||| | || ||| | ||||||||||||||||| ||||| ||||||| ||| ||| |
Sbjct: 153 gtggctgtcgggctacacctccaagttcggcatcgtgtacgtcgacttcaccaccctcaa 212
Query: 437 acgccacccgaaggcgtcggcctactggttcagggacatgct 478
|| |||| |||| |||||||||||||||| | |||||||
Sbjct: 213 gcggtacccaaaggactcggcctactggttcaagaacatgct 254
>gb|BQ764858.1|BQ764858 EBca01_SQ005_H06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H06 5', mRNA sequence
Length = 433
Score = 153 bits (77), Expect = 1e-035
Identities = 155/181 (85%)
Strand = Plus / Plus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
|||||||||||||| ||| | |||||||| ||||||||| |||||||| || || |||||
Sbjct: 16 gaccagtacctgcgggacacgacgagggtccggttctaccggagctacctcagcgagctg 75
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
|||||| |||| ||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 76 aagaagcccatcgacggtggcgccaacgttctcggctacttcgcgtggtctctcctcgac 135
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||| |||||| || | || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 136 aactttgagtggatgtccggctactcgtccaagttcggcatcgtctacgtcgacttcaac 195
Query: 429 a 429
|
Sbjct: 196 a 196
>gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 3', mRNA sequence
Length = 581
Score = 151 bits (76), Expect = 4e-035
Identities = 181/216 (83%)
Strand = Plus / Minus
Query: 263 cgacgccacgagggtgcggttctacaggagctacatcggccagctgaagaaggccataga 322
||||||| ||||||| |||||||| || |||| ||| | ||||||||||||| || ||
Sbjct: 563 cgacgcctcgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcga 504
Query: 323 ccagggagcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggct 382
| | || |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 cgacggcgcgaacgtggtcggctacttcgcctggtccctcctcgacaacttcgagtggct 444
Query: 383 ggcagggtactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgcca 442
| | || ||| | ||||||||||||||||| ||||| ||||||| ||| ||| | || |
Sbjct: 443 gtcgggctacacctccaagttcggcatcgtgtacgtcgacttcaccaccctcaagcggta 384
Query: 443 cccgaaggcgtcggcctactggttcagggacatgct 478
||| |||| |||||||||||||||| | |||||||
Sbjct: 383 cccaaaggactcggcctactggttcaagaacatgct 348
>gb|AV918859.1|AV918859 AV918859 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 3', mRNA sequence
Length = 510
Score = 147 bits (74), Expect = 7e-034
Identities = 156/182 (85%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggag-ctacatcggccagct 307
|||||||||||||| ||| | |||||||| ||||||||| |||| |||| || || ||||
Sbjct: 400 gaccagtacctgcgggacacgacgagggtccggttctaccggaggctacctcagcgagct 341
Query: 308 gaagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcga 367
|||||||||||| ||| || || ||||| ||||||||||| ||||||||||||||
Sbjct: 340 gaagaaggccatcgacggtggcgccaacgttctcggctacttcgcgtggtctctcctcga 281
Query: 368 caacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaa 427
|||||| |||||| || | || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 280 caactttgagtggatgtccggctactcgtccaagttcggcatcgtctacgtcgacttcaa 221
Query: 428 ca 429
||
Sbjct: 220 ca 219
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 148 cggggatgtacgggtgcgtgaactacctcaag 179
|||||||||| ||||||||| |||||||||||
Sbjct: 504 cggggatgtatgggtgcgtgcactacctcaag 473
>gb|CB880520.1|CB880520 HM06M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM06M21
3-PRIME, mRNA sequence
Length = 403
Score = 143 bits (72), Expect = 1e-032
Identities = 138/160 (86%)
Strand = Plus / Minus
Query: 270 acgagggtgcggttctacaggagctacatcggccagctgaagaaggccatagaccaggga 329
|||||||| ||||||||| |||||||| || || |||||||||||||||| ||| ||
Sbjct: 397 acgagggtccggttctaccggagctacctcagcgagctgaagaaggccatcgacggtggc 338
Query: 330 gcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcaggg 389
|| ||||| ||||||||||| |||||||||||||||||||| |||||| || | ||
Sbjct: 337 gccaacgttctcggctacttcgcgtggtctctcctcgacaactttgagtggatgtccggc 278
Query: 390 tactcgtccaagttcggcatcgtctacgtggacttcaaca 429
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 277 tactcgtccaagttcggcatcgtctacgtcgacttcaaca 238
>gb|AV920097.1|AV920097 AV920097 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e05 3', mRNA sequence
Length = 372
Score = 141 bits (71), Expect = 4e-032
Identities = 153/181 (84%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
|||||||||||||| ||| | || ||||| ||||||||| |||||||| || || |||||
Sbjct: 341 gaccagtacctgcgggacacgacnagggtccggttctaccggagctacctcagcgagctg 282
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| || || ||||| |||||||| || |||||||||||||||
Sbjct: 281 aagaaggccatcgacggtggcgccaacgttctcggctacttngcgtggtctctcctcgac 222
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||| |||||| || | || ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 221 aactttgagtggatgtccggctactcgtccaagttcggcatcgtatacgtcgacttcaac 162
Query: 429 a 429
|
Sbjct: 161 a 161
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 141 bits (71), Expect = 4e-032
Identities = 176/211 (83%)
Strand = Plus / Plus
Query: 216 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 275
||||||||||| || || | ||| ||||||| || ||| ||||| ||||||| |||||
Sbjct: 367 aacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagg 426
Query: 276 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 335
|| |||||||| || |||| ||| | ||||||||||||| || ||| | || ||||||
Sbjct: 427 gtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaac 486
Query: 336 gtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcagggtactcg 395
|||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| |
Sbjct: 487 gtggtcggctacttcgcctggtccctcctcgacaacttcgagtggctgtcgggctacacc 546
Query: 396 tccaagttcggcatcgtctacgtggacttca 426
||||||||||||||||| ||||| |||||||
Sbjct: 547 tccaagttcggcatcgtgtacgtcgacttca 577
>gb|CA027495.1|CA027495 HZ59B20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59B20
5-PRIME, mRNA sequence
Length = 388
Score = 141 bits (71), Expect = 4e-032
Identities = 188/227 (82%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||| ||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 140 aatggcaagccgattgggccaaaggcgaattcgaactggctctacatcgtcccatcgggg 199
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 200 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 259
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 260 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 319
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaaggccat 319
||||| ||||||||| |||||||| || || ||||||||||||||||
Sbjct: 320 agggtccggttctaccggagctacctcagcgagctgaagaaggccat 366
>gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62G02
5-PRIME, mRNA sequence
Length = 552
Score = 141 bits (71), Expect = 4e-032
Identities = 149/175 (85%)
Strand = Plus / Plus
Query: 304 agctgaagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcc 363
||||||||||||| || ||| | || |||||||||| ||||||||||||||||| ||||
Sbjct: 2 agctgaagaaggcgatcgacgacggcgcgaacgtggtcggctacttcgcctggtccctcc 61
Query: 364 tcgacaacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggact 423
|||||||||||||||||||| | || ||| | ||||||||||||||||| ||||| ||||
Sbjct: 62 tcgacaacttcgagtggctgtcgggctacacctccaagttcggcatcgtgtacgtcgact 121
Query: 424 tcaacacgctcgaacgccacccgaaggcgtcggcctactggttcagggacatgct 478
||| ||| ||| | || |||| |||| |||||||||||||||| | |||||||
Sbjct: 122 tcaccaccctcaagcggtacccaaaggactcggcctactggttcaagaacatgct 176
>gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 5', mRNA sequence
Length = 604
Score = 139 bits (70), Expect = 2e-031
Identities = 184/222 (82%)
Strand = Plus / Plus
Query: 93 aatggcaaaccgattggaccacaggcgaattctaagtggctctacatcgccccgacgggg 152
|||||||| |||||||||||| |||||||||| || ||||||||||||| ||| |||||
Sbjct: 383 aatggcaagccgattggaccaaaggcgaattcgaactggctctacatcgtcccatcgggg 442
Query: 153 atgtacgggtgcgtgaactacctcaaggagaagtatgggaatccaacgatctacataacg 212
||||| ||||||||| ||||||||| ||||||| ||||| || ||||| ||||||
Sbjct: 443 atgtatgggtgcgtgcactacctcagccagaagtacgggaacccgccgatcgtcataact 502
Query: 213 gagaacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacg 272
|| ||||||||||| ||||| || | || || |||||||||||||| ||| | |||
Sbjct: 503 gaaaacggaatggatcagccgggggggctcacgcgcgaccagtacctgcgggacacgacg 562
Query: 273 agggtgcggttctacaggagctacatcggccagctgaagaag 314
||||| ||||||||| |||||||| || || |||||||||||
Sbjct: 563 agggtccggttctaccggagctacctcagcgagctgaagaag 604
>gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_O07 5', mRNA sequence
Length = 447
Score = 139 bits (70), Expect = 2e-031
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
|||||| ||||||| ||| | |||||||| ||||||||| |||||||| || || |||||
Sbjct: 138 gaccagnacctgcgggacacgacgagggtccggttctaccggagctacctcagcgagctg 197
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
|| || ||||| ||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 198 aataaagccatcgacggtggcgccaacgttctcggctacttcgcgtggtctctcctcgac 257
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||| |||||| || | || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 258 aactttgagtggatgtccggctactcgtccaagttcggcatcgtctacgtcgacttcaac 317
Query: 429 a 429
|
Sbjct: 318 a 318
Score = 75.8 bits (38), Expect = 2e-012
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 109 gaccacaggcgaattctaagtggctctacatcgccccgacggggatgtacgggtgcgtga 168
||||| |||||||||| || ||||||||||||| ||| |||||||||| |||||||||
Sbjct: 1 gaccaaaggcgaattcgaactggctctacatcgtcccatcggggatgtatgggtgcgtgc 60
Query: 169 actacctcaaggagaagtatgggaatccaacgatctacataacggagaacggaa 222
||||||||| ||||||| ||||| || ||||| |||||| || |||||||
Sbjct: 61 actacctcatccagaagtacgggaacccgccgatcgtcataactgaaaacggaa 114
>gb|BG344496.1|BG344496 HVSMEg0009H02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009H02f, mRNA sequence
Length = 793
Score = 133 bits (67), Expect = 1e-029
Identities = 152/181 (83%)
Strand = Plus / Minus
Query: 249 gaccagtacctgcgcgacgccacgagggtgcggttctacaggagctacatcggccagctg 308
||||||||||| || ||| |||||||| ||||||||| |||||||| || || |||||
Sbjct: 427 gaccagtaccttcgggaccggacgagggtccggttctaccggagctacttcagcgagctg 368
Query: 309 aagaaggccatagaccagggagcgaacgtggctggctacttcgcctggtctctcctcgac 368
||||||||||| ||| || || ||||| ||||||||||| |||||||||||||||
Sbjct: 367 aagaaggccatcgacggtggcgccaacgttctcggctacttcgcgtggtctctcctcgac 308
Query: 369 aacttcgagtggctggcagggtactcgtccaagttcggcatcgtctacgtggacttcaac 428
||||| |||||| || | || ||||||||||||||||||||||| || || |||||||||
Sbjct: 307 aactttgagtggatgtccggctactcgtccaagttcggcatcgtttangtngacttcaac 248
Query: 429 a 429
|
Sbjct: 247 a 247
>gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D01, mRNA sequence
Length = 1300
Score = 129 bits (65), Expect = 2e-028
Identities = 128/149 (85%)
Strand = Plus / Plus
Query: 330 gcgaacgtggctggctacttcgcctggtctctcctcgacaacttcgagtggctggcaggg 389
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct: 68 gcgaacgtggtcggctacttcgcctggtccctcctcgacaacttcgagtggctgtcgggc 127
Query: 390 tactcgtccaagttcggcatcgtctacgtggacttcaacacgctcgaacgccacccgaag 449
||| | ||||||||||||||||| ||||| ||||||| ||| ||| | || |||| |||
Sbjct: 128 tacacctccaagttcggcatcgtgtacgtcgacttcaccaccctcaagcggtacccaaag 187
Query: 450 gcgtcggcctactggttcagggacatgct 478
| |||||||||||||||| | |||||||
Sbjct: 188 gactcggcctactggttcaagaacatgct 216
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,469
Number of Sequences: 312970
Number of extensions: 68469
Number of successful extensions: 16852
Number of sequences better than 0.5: 109
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16521
Number of HSP's gapped (non-prelim): 324
length of query: 806
length of database: 175,134,539
effective HSP length: 19
effective length of query: 787
effective length of database: 169,188,109
effective search space: 133151041783
effective search space used: 133151041783
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)