BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Libr... 244 5e-063
gb|AV836787.1|AV836787 AV836787 K. Sato unpublished cDNA li... 125 3e-027
gb|BM098175.2|BM098175 EBpi03_SQ002_M05_R pistil, 4 DPA, no... 115 3e-024
gb|AL507518.1|AL507518 AL507518 Hordeum vulgare Barke devel... 68 6e-010
gb|AL510808.1|AL510808 AL510808 Hordeum vulgare Barke devel... 68 6e-010
gb|BQ759452.1|BQ759452 EBpi01_SQ004_F15_R pistil, 1 DPA, no... 66 3e-009
gb|AV836267.1|AV836267 AV836267 K. Sato unpublished cDNA li... 60 2e-007
>gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM003.E05, mRNA sequence
Length = 890
Score = 244 bits (123), Expect = 5e-063
Identities = 246/287 (85%)
Strand = Plus / Minus
Query: 748 gtccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaa 807
||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 573 gtccatgctccaggaaacacctgagtggtgcaacgggaaacgccatcccacttgttgtac 514
Query: 808 gtcccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatat 867
||||||||||| | || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 513 gtcccacggctgctgtcggtccactcgccatagtccattcctacaacccagaacgcatat 454
Query: 868 ccatcaatgtggtaggtctggacagttgagtcattgttctgaaatacaatttccaaaaag 927
||||| || ||||||||||| || | | ||| ||||||||||| ||||| |||| |||
Sbjct: 453 ccatcgatatggtaggtctgaaccttcgtgtcgttgttctgaaacacaatctccatgaag 394
Query: 928 ttcttgtatgtggagttaatgacagatgttctgatcactggcggtccatcaattggcatt 987
|||||||| || ||||| |||||||| | | |||||| |||||||||||| ||||||
Sbjct: 393 ttcttgtacgtcgagttgatgacagaagagccgatcaccggcggtccatcagatggcatc 334
Query: 988 gtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgc 1034
| |||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 333 attgggaagtcgagtgtgtagacttctttcttttcgtagagatctgc 287
>gb|AV836787.1|AV836787 AV836787 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd2p19, mRNA
sequence
Length = 696
Score = 125 bits (63), Expect = 3e-027
Identities = 212/258 (82%), Gaps = 4/258 (1%)
Strand = Plus / Plus
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttgtct 606
|||||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||
Sbjct: 433 ccatgaggcttctgagccttttgtttttccttgaggaggccacagaagagggcgttgtct 492
Query: 607 ggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaagtc 666
|| |||| ||||| || ||||||||||| | |||||||||||||||||||| |||
Sbjct: 493 ggtagcaccgattcagtcacgttatagcctccgtcaggatccaccaccctgatgtacgtc 552
Query: 667 tcctgaccc-agataccacgtgtccaggttt-tctgtccgtacattccaaaatcctgggc 724
||||| ||| || ||||| |||||||| ||| || || || || ||||| || || ||||
Sbjct: 553 tcctggcccgaggtaccaggtgtccagatttctccgtgcgcacgttccagaaccccgggc 612
Query: 725 tgtcaagtgacagcatcacagcagtccatgctcccggaaacacc--tgagtcgtgcaacg 782
|||| || |||| || || || ||||||||||| ||||||||| |||| ||||||||
Sbjct: 613 tgtcgagcgacaacaggacggcggtccatgctccaggaaacaccctggagtggtgcaacg 672
Query: 783 agaaacaccatcccactt 800
||||| || ||||||||
Sbjct: 673 ggaaacgccgtcccactt 690
>gb|BM098175.2|BM098175 EBpi03_SQ002_M05_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_M05 5', mRNA sequence
Length = 525
Score = 115 bits (58), Expect = 3e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttgtct 606
|||||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||
Sbjct: 153 ccatgaggcttctgagccttttgtttttccttgaggaggccacagaagagggcgttgtct 94
Query: 607 ggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaagtc 666
|| |||| ||||| || ||||||||||| | |||||||||||||||||||| |||
Sbjct: 93 ggtagcaccgattcagtcacgttatagcctccgtcaggatccaccaccctgatgtacgtc 34
Query: 667 tcctgacccagataccacgtgtccag 692
||||| || || ||||| ||||||||
Sbjct: 33 tcctggccgaggtaccaggtgtccag 8
>gb|AL507518.1|AL507518 AL507518 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06B03V 5',
mRNA sequence
Length = 700
Score = 67.9 bits (34), Expect = 6e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 925 aagttcttgtatgtggagttaatgacagatgttctgatcactggcggtccatcaattggc 984
||||||||| | || ||||| |||||||| | | |||||| |||||||||||| ||||
Sbjct: 631 aagttcttgaacgtcgagttgatgacagaagagccgatcaccggcggtccatcagatggc 572
Query: 985 attgtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgc 1034
|| | |||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 571 atcattgggaagtcgagtgtgtagacttctttcttttcgtagagatctgc 522
>gb|AL510808.1|AL510808 AL510808 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06B03u 3',
mRNA sequence
Length = 454
Score = 67.9 bits (34), Expect = 6e-010
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagag 596
|||||||||||||||||||| ||||| || ||||||||||||||| ||||
Sbjct: 354 ccatgaggcttctgagccttttgtttttctttgaggaggccacagaagag 403
>gb|BQ759452.1|BQ759452 EBpi01_SQ004_F15_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_F15 5', mRNA sequence
Length = 440
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggcc 587
|||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 41 ccatgaggcttctgagccttttgtttttccttgaggaggcc 1
>gb|AV836267.1|AV836267 AV836267 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd2p19, mRNA sequence
Length = 654
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 961 atcactggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttg 1020
||||| |||||||||||| |||||| | |||||||| ||||||||||| || |||||
Sbjct: 609 atcaccggcggtccatcagatggcatcattgggaagtcgagtgtgtagacttctttcttt 550
Query: 1021 tcgtacagatctgc 1034
||||| ||||||||
Sbjct: 549 tcgtagagatctgc 536
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,073
Number of Sequences: 312970
Number of extensions: 80073
Number of successful extensions: 21700
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21689
Number of HSP's gapped (non-prelim): 8
length of query: 1062
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1043
effective length of database: 169,188,109
effective search space: 176463197687
effective search space used: 176463197687
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)