BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2276642.2.1
         (1062 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE420880.1|BE420880  HWM003.E05 ITEC HWM Barley Leaf Libr...   244   5e-063
gb|AV836787.1|AV836787  AV836787 K. Sato unpublished cDNA li...   125   3e-027
gb|BM098175.2|BM098175  EBpi03_SQ002_M05_R pistil, 4 DPA, no...   115   3e-024
gb|AL507518.1|AL507518  AL507518 Hordeum vulgare Barke devel...    68   6e-010
gb|AL510808.1|AL510808  AL510808 Hordeum vulgare Barke devel...    68   6e-010
gb|BQ759452.1|BQ759452  EBpi01_SQ004_F15_R pistil, 1 DPA, no...    66   3e-009
gb|AV836267.1|AV836267  AV836267 K. Sato unpublished cDNA li...    60   2e-007
>gb|BE420880.1|BE420880 HWM003.E05 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
            vulgare cDNA clone HWM003.E05, mRNA sequence
          Length = 890

 Score =  244 bits (123), Expect = 5e-063
 Identities = 246/287 (85%)
 Strand = Plus / Minus

                                                                        
Query: 748  gtccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaa 807
            ||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| 
Sbjct: 573  gtccatgctccaggaaacacctgagtggtgcaacgggaaacgccatcccacttgttgtac 514

                                                                        
Query: 808  gtcccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatat 867
            |||||||||||  | || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 513  gtcccacggctgctgtcggtccactcgccatagtccattcctacaacccagaacgcatat 454

                                                                        
Query: 868  ccatcaatgtggtaggtctggacagttgagtcattgttctgaaatacaatttccaaaaag 927
            ||||| || ||||||||||| ||  | | ||| ||||||||||| ||||| ||||  |||
Sbjct: 453  ccatcgatatggtaggtctgaaccttcgtgtcgttgttctgaaacacaatctccatgaag 394

                                                                        
Query: 928  ttcttgtatgtggagttaatgacagatgttctgatcactggcggtccatcaattggcatt 987
            |||||||| || ||||| |||||||| |  | |||||| ||||||||||||  |||||| 
Sbjct: 393  ttcttgtacgtcgagttgatgacagaagagccgatcaccggcggtccatcagatggcatc 334

                                                           
Query: 988  gtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgc 1034
             | |||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 333  attgggaagtcgagtgtgtagacttctttcttttcgtagagatctgc 287
>gb|AV836787.1|AV836787 AV836787 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd2p19, mRNA
           sequence
          Length = 696

 Score =  125 bits (63), Expect = 3e-027
 Identities = 212/258 (82%), Gaps = 4/258 (1%)
 Strand = Plus / Plus

                                                                       
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttgtct 606
           |||||||||||||||||||| ||||| |||||||||||||||||| ||||   |||||||
Sbjct: 433 ccatgaggcttctgagccttttgtttttccttgaggaggccacagaagagggcgttgtct 492

                                                                       
Query: 607 ggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaagtc 666
           ||   ||||   ||||| || ||||||||||| |  |||||||||||||||||||| |||
Sbjct: 493 ggtagcaccgattcagtcacgttatagcctccgtcaggatccaccaccctgatgtacgtc 552

                                                                       
Query: 667 tcctgaccc-agataccacgtgtccaggttt-tctgtccgtacattccaaaatcctgggc 724
           ||||| ||| || ||||| |||||||| ||| || || || || ||||| || || ||||
Sbjct: 553 tcctggcccgaggtaccaggtgtccagatttctccgtgcgcacgttccagaaccccgggc 612

                                                                       
Query: 725 tgtcaagtgacagcatcacagcagtccatgctcccggaaacacc--tgagtcgtgcaacg 782
           |||| || |||| ||  || || ||||||||||| |||||||||   |||| ||||||||
Sbjct: 613 tgtcgagcgacaacaggacggcggtccatgctccaggaaacaccctggagtggtgcaacg 672

                             
Query: 783 agaaacaccatcccactt 800
            ||||| || ||||||||
Sbjct: 673 ggaaacgccgtcccactt 690
>gb|BM098175.2|BM098175 EBpi03_SQ002_M05_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
           Hordeum vulgare subsp. vulgare cDNA clone
           EBpi03_SQ002_M05 5', mRNA sequence
          Length = 525

 Score =  115 bits (58), Expect = 3e-024
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                       
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttgtct 606
           |||||||||||||||||||| ||||| |||||||||||||||||| ||||   |||||||
Sbjct: 153 ccatgaggcttctgagccttttgtttttccttgaggaggccacagaagagggcgttgtct 94

                                                                       
Query: 607 ggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaagtc 666
           ||   ||||   ||||| || ||||||||||| |  |||||||||||||||||||| |||
Sbjct: 93  ggtagcaccgattcagtcacgttatagcctccgtcaggatccaccaccctgatgtacgtc 34

                                     
Query: 667 tcctgacccagataccacgtgtccag 692
           ||||| || || ||||| ||||||||
Sbjct: 33  tcctggccgaggtaccaggtgtccag 8
>gb|AL507518.1|AL507518 AL507518 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
            Hordeum vulgare subsp. vulgare cDNA clone HY06B03V 5',
            mRNA sequence
          Length = 700

 Score = 67.9 bits (34), Expect = 6e-010
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 925  aagttcttgtatgtggagttaatgacagatgttctgatcactggcggtccatcaattggc 984
            ||||||||| | || ||||| |||||||| |  | |||||| ||||||||||||  ||||
Sbjct: 631  aagttcttgaacgtcgagttgatgacagaagagccgatcaccggcggtccatcagatggc 572

                                                              
Query: 985  attgtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgc 1034
            ||  | |||||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 571  atcattgggaagtcgagtgtgtagacttctttcttttcgtagagatctgc 522
>gb|AL510808.1|AL510808 AL510808 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
           Hordeum vulgare subsp. vulgare cDNA clone HY06B03u 3',
           mRNA sequence
          Length = 454

 Score = 67.9 bits (34), Expect = 6e-010
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                             
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggccacagtagag 596
           |||||||||||||||||||| ||||| || ||||||||||||||| ||||
Sbjct: 354 ccatgaggcttctgagccttttgtttttctttgaggaggccacagaagag 403
>gb|BQ759452.1|BQ759452 EBpi01_SQ004_F15_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
           Hordeum vulgare subsp. vulgare cDNA clone
           EBpi01_SQ004_F15 5', mRNA sequence
          Length = 440

 Score = 65.9 bits (33), Expect = 3e-009
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 547 ccatgaggcttctgagccttctgtttatccttgaggaggcc 587
           |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 41  ccatgaggcttctgagccttttgtttttccttgaggaggcc 1
>gb|AV836267.1|AV836267 AV836267 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
            vulgare seedling leaves second leaf stage Hordeum vulgare
            subsp. vulgare cDNA clone basd2p19, mRNA sequence
          Length = 654

 Score = 60.0 bits (30), Expect = 2e-007
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 961  atcactggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttg 1020
            ||||| ||||||||||||  ||||||  | |||||||| ||||||||||| || ||||| 
Sbjct: 609  atcaccggcggtccatcagatggcatcattgggaagtcgagtgtgtagacttctttcttt 550

                          
Query: 1021 tcgtacagatctgc 1034
            ||||| ||||||||
Sbjct: 549  tcgtagagatctgc 536
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,073
Number of Sequences: 312970
Number of extensions: 80073
Number of successful extensions: 21700
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21689
Number of HSP's gapped (non-prelim): 8
length of query: 1062
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1043
effective length of database: 169,188,109
effective search space: 176463197687
effective search space used: 176463197687
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)