BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU985063.1|BU985063 HF06A11r HF Hordeum vulgare subsp. v... 555 e-156
gb|AV833509.1|AV833509 AV833509 K. Sato unpublished cDNA li... 458 e-127
gb|CA025459.1|CA025459 HZ52D16r HZ Hordeum vulgare subsp. v... 424 e-117
gb|CA021204.1|CA021204 HZ39G19r HZ Hordeum vulgare subsp. v... 404 e-111
gb|BM373009.2|BM373009 EBma04_SQ002_L18_R maternal, 10 DPA,... 381 e-104
gb|BU971653.1|BU971653 HB19E05r BC Hordeum vulgare subsp. v... 315 2e-084
gb|CA032561.1|CA032561 HX13H09r HX Hordeum vulgare subsp. v... 270 1e-070
gb|CB876070.1|CB876070 HX10D01w HX Hordeum vulgare subsp. v... 260 1e-067
gb|BQ657817.1|BQ657817 HA06O04u HA Hordeum vulgare subsp. v... 202 2e-050
gb|BQ664626.1|BQ664626 HV04C11u HV Hordeum vulgare subsp. v... 202 2e-050
gb|CB876029.1|CB876029 HX10B04w HX Hordeum vulgare subsp. v... 198 3e-049
gb|BE559321.1|BE559321 HV_CEb0024B17f Hordeum vulgare seedl... 172 2e-041
gb|AJ460229.1|AJ460229 AJ460229 S00002 Hordeum vulgare subs... 167 1e-039
gb|BU986511.1|BU986511 HF12B08r HF Hordeum vulgare subsp. v... 167 1e-039
gb|AL501545.1|AL501545 AL501545 Hordeum vulgare Barke roots... 161 7e-038
gb|CA016485.1|CA016485 HV08K11u HV Hordeum vulgare subsp. v... 159 3e-037
gb|AV922348.1|AV922348 AV922348 K. Sato unpublished cDNA li... 149 3e-034
gb|BE214596.2|BE214596 HV_CEb0003O18f Hordeum vulgare seedl... 145 4e-033
gb|BI952927.1|BI952927 HVSMEm0008H15f Hordeum vulgare green... 143 2e-032
gb|BE437783.1|BE437783 SFR007.E01F990616 ITEC SFR Barley Le... 125 4e-027
gb|AL503659.1|AL503659 AL503659 Hordeum vulgare Barke roots... 119 2e-025
gb|BU985246.1|BU985246 HF06J02r HF Hordeum vulgare subsp. v... 119 2e-025
gb|BU986846.1|BU986846 HF13B07r HF Hordeum vulgare subsp. v... 119 2e-025
gb|BG418316.1|BG418316 HVSMEk0022E18f Hordeum vulgare testa... 109 2e-022
gb|BI776655.2|BI776655 EBpi07_SQ001_E16_R pistil, 12 DPA, n... 101 6e-020
gb|BQ469672.1|BQ469672 HZ01I06r HZ Hordeum vulgare subsp. v... 98 9e-019
gb|BQ665903.1|BQ665903 HZ01I06u HZ Hordeum vulgare subsp. v... 98 9e-019
gb|BU972360.1|BU972360 HB21G23r BC Hordeum vulgare subsp. v... 78 8e-013
gb|BF616053.1|BF616053 HVSMEc0001F09f Hordeum vulgare seedl... 68 8e-010
gb|BM368693.2|BM368693 EBem08_SQ004_F13_R embryo, 40 DPA, n... 64 1e-008
gb|BF256187.3|BF256187 HVSMEf0009A18f Hordeum vulgare seedl... 56 3e-006
gb|BJ470058.1|BJ470058 BJ470058 K. Sato unpublished cDNA li... 40 0.18
gb|BJ470477.1|BJ470477 BJ470477 K. Sato unpublished cDNA li... 40 0.18
gb|BJ473530.1|BJ473530 BJ473530 K. Sato unpublished cDNA li... 40 0.18
gb|BJ474834.1|BJ474834 BJ474834 K. Sato unpublished cDNA li... 40 0.18
>gb|BU985063.1|BU985063 HF06A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF06A11
5-PRIME, mRNA sequence
Length = 611
Score = 555 bits (280), Expect = e-156
Identities = 451/508 (88%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||||||||||||||||| |||||||| | || ||||||||||
Sbjct: 104 gtaccttacgaactgcacttctacgatatgctgacttactcaattcgccaaagaaggctg 163
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||| |||||||||| ||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct: 164 ctttgactgctttagctgctcatgcttctgacccagctgaagctgaacgactgaggtttt 223
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct: 224 tggcttctcctgctggaaaggatgagtatgctcaatggatagtagctagccagaggagcc 283
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|||||||||||||||||||||||||||||||||| || || |||| || || || ||||
Sbjct: 284 ttcttgaagttatggctgcattcccttcagctaaaccgcccttgggggtattctttgcag 343
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctc 319
| ||||||||||||| || ||||||| |||||| || ||||||||||||||| ||||||
Sbjct: 344 cggtagctcctcgtctacagccacgattctactccatatcatcatctccaaagttggctc 403
Query: 320 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatcc 379
|||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 404 cctctagaattcatgtaacgtgtgcattagtttatgggcctacaccaacagaaaggatcc 463
Query: 380 accaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaat 439
|||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 464 accaaggagtttgttcgacatggatgaagaacacacttccactggaatatagcgaagaat 523
Query: 440 gcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatcca 499
|||| ||||| || || |||||||||||||||||||| | ||| ||||| || |||||||
Sbjct: 524 gcagttgggcaccgatttttgtgaggcagtcaaattttaggttgcctgcagatccatcca 583
Query: 500 ctccgattatcatgattggtcctgggac 527
|||| || ||||||||||||||||||||
Sbjct: 584 ctcccatcatcatgattggtcctgggac 611
>gb|AV833509.1|AV833509 AV833509 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags13p18, mRNA sequence
Length = 431
Score = 458 bits (231), Expect = e-127
Identities = 378/427 (88%)
Strand = Plus / Plus
Query: 133 aggttcttggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcag 192
||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 5 aggtttttggcttctcctgctggaaaggatgagtatgctcaatggatagtagctagccag 64
Query: 193 aggagtcttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgttt 252
||||| ||||||||||||||||||||||||||||||||||| || || |||| || ||
Sbjct: 65 aggagccttcttgaagttatggctgcattcccttcagctaaaccgcccttgggggtattc 124
Query: 253 ttcgcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaag 312
|| ||||| ||||||||||||| || ||||||| |||||| || |||||||||||||||
Sbjct: 125 tttgcagcggtagctcctcgtctacagccacgattctactccatatcatcatctccaaag 184
Query: 313 atggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagga 372
|||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 185 ttggctccctctagaattcatgtaacgtgtgcattagtttatgggcctacaccaacagaa 244
Query: 373 aggatccaccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatagc 432
||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||
Sbjct: 245 aggatccaccaaggagtttgttcgacatggatgaagaacacacttccactggaatatagc 304
Query: 433 gaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgac 492
||||||||||| ||||| || || |||||||||||||||||||| | ||| ||||| ||
Sbjct: 305 gaagaatgcagttgggcaccgatttttgtgaggcagtcaaattttaggttgcctgcagat 364
Query: 493 ccatccactccgattatcatgattggtcctgggacagggctggctccttttagaggcttc 552
||||||||||| || |||||||||||||||||||| || || || |||||||| |||||
Sbjct: 365 ccatccactcccatcatcatgattggtcctgggactggactagcaccttttaggggcttt 424
Query: 553 ttgcagg 559
|||||||
Sbjct: 425 ttgcagg 431
>gb|CA025459.1|CA025459 HZ52D16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52D16
5-PRIME, mRNA sequence
Length = 444
Score = 424 bits (214), Expect = e-117
Identities = 343/386 (88%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||||||||||||||||| |||||||| | || ||||||||||
Sbjct: 59 gtaccttacgaactgcacttctacgatatgctgacttactcaattcgccaaagaaggctg 118
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||| |||||||||| ||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct: 119 ctttgactgctttagctgctcatgcttctgacccagctgaagctgaacgactgaggtttt 178
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtc 199
|||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct: 179 tggcttctcctgctggaaaggatgagtatgctcaatggatagtagctagccagaggagcc 238
Query: 200 ttcttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcag 259
|||||||||||||||||||||||||||||||||| || || |||| || || || ||||
Sbjct: 239 ttcttgaagttatggctgcattcccttcagctaaaccgcccttgggggtattctttgcag 298
Query: 260 caatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctc 319
| ||||||||||||| || ||||||| |||||| || ||||||||||||||| ||||||
Sbjct: 299 cggtagctcctcgtctacagccacgattctactccatatcatcatctccaaagttggctc 358
Query: 320 cctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatcc 379
|||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 359 cctctagaattcatgtaacgtgtgcattagtttatgggcctacaccaacagaaaggatcc 418
Query: 380 accaaggagtttgttcaacatggatg 405
|||||||||||||||| |||||||||
Sbjct: 419 accaaggagtttgttcgacatggatg 444
>gb|CA021204.1|CA021204 HZ39G19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39G19
5-PRIME, mRNA sequence
Length = 387
Score = 404 bits (204), Expect = e-111
Identities = 340/384 (88%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 37 cttctacgatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagct 96
||||||||||||||||| |||||||| | || ||||||||||||||| ||||||||||
Sbjct: 4 cttctacgatatgctgacttactcaattcgccaaagaaggctgctttgactgctttagct 63
Query: 97 tctcatgcatctgatccagctgaagctgaacgacttaggttcttggcct-ctcctgctgg 155
||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 64 gctcatgcttctgacccagctgaagctgaacgactgaggtttttggccttctcctgctgg 123
Query: 156 aaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggc 215
||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 124 aaaggatgagtatgctcaatggatagtagctagccagaggagccttcttgaagttatggc 183
Query: 216 tgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtct 275
|||||||||||||||||| || || |||| || || || ||||| |||||||||||||
Sbjct: 184 tgcattcccttcagctaaaccgcccttgggggtattctttgcagcggtagctcctcgtct 243
Query: 276 gcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatgt 335
|| ||||||| |||||| || ||||||||||||||| |||||||||| |||||||||||
Sbjct: 244 acagccacgattctactccatatcatcatctccaaagttggctccctctagaattcatgt 303
Query: 336 aacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttc 395
||| || |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 304 aacgtgcgcattattttatgggcctacaccaacagaaaggatccaccaaggagtttgttc 363
Query: 396 aacatggatgaagaatacaattcc 419
|||||||||||||| ||| ||||
Sbjct: 364 gacatggatgaagaacacacttcc 387
>gb|BM373009.2|BM373009 EBma04_SQ002_L18_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L18 5', mRNA sequence
Length = 570
Score = 381 bits (192), Expect = e-104
Identities = 420/496 (84%)
Strand = Plus / Plus
Query: 457 tttgtgaggcagtcaaatttcaagttacctgctgacccatccactccgattatcatgatt 516
|||||||||||||||||||| | ||| ||||| || ||||||||||| || |||||||||
Sbjct: 5 tttgtgaggcagtcaaattttaggttgcctgcagatccatccactcccatcatcatgatt 64
Query: 517 ggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
||||||||||| || || || |||||||| ||||| ||||||||||| |||| || |||
Sbjct: 65 ggtcctgggactggactagcaccttttaggggctttttgcaggaaagactagctctaaaa 124
Query: 577 caatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccgtaatatg 636
||||||||| ||| |||||| |||| | || |||||||||||||||||||| | |||
Sbjct: 125 gaatctggagttgaattgggcagttcagtgctcttctttggatgcaggaaccgcgacatg 184
Query: 637 gactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagcta 696
||||| ||||| || |||||||| | || ||||||| |||| ||||| || || ||||||
Sbjct: 185 gactatatatacgaggatgagttactaaatttccttcaggaaggggcactctccgagcta 244
Query: 697 attgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaa 756
||||| || | |||||| ||||| ||||| |||||||||||||||||||||||| | ||
Sbjct: 245 attgtcgcgtactctcgtgaaggaccaaccaaagaatatgtgcagcataagatgattgac 304
Query: 757 aaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgat 816
|||||||| || ||||||||| ||||||| | ||||||||| |||||||||| ||||||
Sbjct: 305 aaggccaccgagatttggaacgtcatctctcaaggtggttacatatatgtttgtggtgat 364
Query: 817 gccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcaggga 876
|||||||| ||||| | |||||||||| | ||||| |||||||| || ||||||||
Sbjct: 365 gccaagggcatggcgaaggatgtacacagggttcttcacacaatagttcagaagcaggga 424
Query: 877 tctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggtac 936
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct: 425 tctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggcaggtac 484
Query: 937 ctccgtgatgtatggt 952
||||||||||| ||||
Sbjct: 485 ctccgtgatgtgtggt 500
>gb|BU971653.1|BU971653 HB19E05r BC Hordeum vulgare subsp. vulgare cDNA clone HB19E05
5-PRIME, mRNA sequence
Length = 659
Score = 315 bits (159), Expect = 2e-084
Identities = 351/415 (84%)
Strand = Plus / Plus
Query: 538 ccttttagaggcttcttgcaggaaaggttagcactgaaacaatctggagcagaactgggc 597
|||||||| ||||| ||||||||||| |||| || ||| ||||||||| ||| |||||
Sbjct: 46 ccttttaggggctttttgcaggaaagactagctctaaaagaatctggagttgaattgggc 105
Query: 598 acttcaatccttttctttggatgcaggaaccgtaatatggactacatatatgaagatgag 657
| |||| | || |||||||||||||||||||| | |||||||| ||||| || ||||||
Sbjct: 106 agttcagtgctcttctttggatgcaggaaccgcgacatggactatatatacgaggatgag 165
Query: 658 ttgcaaactttccttgaggagggggcgctttctgagctaattgttgcattctctcgggaa 717
|| |||| ||||||| |||| ||||| || || ||||||||||| || | |||||| |||
Sbjct: 166 ttacaaaatttccttcaggaaggggcactctccgagctaattgtcgcgtactctcgtgaa 225
Query: 718 gggccaacgaaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaac 777
|| ||||| |||||||||||||||||||||||| | || |||||||| || |||||||||
Sbjct: 226 ggaccaaccaaagaatatgtgcagcataagatgattgacaaggccaccgagatttggaac 285
Query: 778 atcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggctagagat 837
||||||| | ||||||||| |||||||||| |||||||||||||| ||||| | |||
Sbjct: 286 gtcatctctcaaggtggttacatatatgtttgtggtgatgccaagggcatggcgaaggat 345
Query: 838 gtacacaaaatgcttcatacaatagtccaagagcagggatctttggataactccaaaacc 897
||||||| | ||||| |||||||| || |||||||||||||||||||||| ||||||
Sbjct: 346 gtacacagggttcttcacacaatagttcagaagcagggatctttggataactcgaaaacc 405
Query: 898 gagagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||| |||||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 406 gagctgtatgtaaagaacctacagatggaaggcaggtacctccgtgatgtgtggt 460
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 593 gagttaatcggtgtaattctttgacatctaac 624
>gb|CA032561.1|CA032561 HX13H09r HX Hordeum vulgare subsp. vulgare cDNA clone HX13H09
5-PRIME, mRNA sequence
Length = 311
Score = 270 bits (136), Expect = 1e-070
Identities = 256/296 (86%)
Strand = Plus / Plus
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 1 gtaacgtgtgcattagtttatgggcctacaccaacagaaaggatccaccaaggagtttgt 60
Query: 394 tcaacatggatgaagaatacaattcctctggaatatagcgaagaatgcagctgggctccc 453
|| |||||||||||||| ||| |||| ||||||||||||||| ||||||| ||||| ||
Sbjct: 61 tcgacatggatgaagaacacacttccactggaatatagcgaataatgcagttgggcaccg 120
Query: 454 atatttgtgaggcagtcaaatttcaagttacctgctgacccatccactccgattatcatg 513
|| |||||||||||| ||||||| | ||| ||||| || ||||||||||| || ||||||
Sbjct: 121 atttttgtgaggcagacaaattttacgttgcctgcagatccatccactcccatcatcatg 180
Query: 514 attggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggttagcactg 573
|||||||||||||| || || || |||||||| ||||| ||||||||||| || | ||
Sbjct: 181 attggtcctgggactggactagcaccttttaggggctttttgcaggaaagactaactcta 240
Query: 574 aaacaatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccg 629
||| ||||||||| ||| |||||| |||| | || ||||||||||||| ||||||
Sbjct: 241 aaagaatctggagttgaattgggcagttcagtgctcttctttggatgcacgaaccg 296
>gb|CB876070.1|CB876070 HX10D01w HX Hordeum vulgare subsp. vulgare cDNA clone HX10D01
3-PRIME, mRNA sequence
Length = 681
Score = 260 bits (131), Expect = 1e-067
Identities = 272/319 (85%)
Strand = Plus / Minus
Query: 634 atggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgag 693
|||||||| ||||| || |||||||| |||| ||||||| |||| ||||| || || |||
Sbjct: 675 atggactatatatacgaggatgagttacaaaatttccttcaggaaggggcactctccgag 616
Query: 694 ctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtg 753
|||||||| || | |||||| ||||| ||||| |||||||||||||||||||||||| |
Sbjct: 615 ctaattgtcgcgtactctcgtgaaggaccaaccaaagaatatgtgcagcataagatgatt 556
Query: 754 gaaaaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggt 813
|| |||||||| || ||||||||| ||||||| | ||||||||| |||||||||| |||
Sbjct: 555 gacaaggccaccgagatttggaacgtcatctctcaaggtggttacatatatgtttgtggt 496
Query: 814 gatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcag 873
||||||||||| ||||| | |||||||||| | ||||| |||||||| || |||||
Sbjct: 495 gatgccaagggcatggcgaaggatgtacacagggttcttcacacaatagttcagaagcag 436
Query: 874 ggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaagg 933
||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||| |||
Sbjct: 435 ggatctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggcagg 376
Query: 934 tacctccgtgatgtatggt 952
|||||||||||||| ||||
Sbjct: 375 tacctccgtgatgtgtggt 357
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 224 gagttaatcggtgtaattctttgacatctaac 193
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 83 atcatacagtttgagatgag 64
>gb|BQ657817.1|BQ657817 HA06O04u HA Hordeum vulgare subsp. vulgare cDNA clone HA06O04
3-PRIME, mRNA sequence
Length = 587
Score = 202 bits (102), Expect = 2e-050
Identities = 195/226 (86%)
Strand = Plus / Minus
Query: 727 aaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctca 786
|||||||||||||||||||||||| | || |||||||| || ||||||||| |||||||
Sbjct: 583 aaagaatatgtgcagcataagatgattgacaaggccaccgagatttggaacgtcatctct 524
Query: 787 aatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaa 846
| ||||||||| |||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 523 caaggtggttacatatatgtttgtggtgatgccaagggcatggcgaaggatgtacacagg 464
Query: 847 atgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctat 906
| ||||| |||||||| || |||||||||||||||||||||| ||||||||| |||
Sbjct: 463 gttcttcacacaatagttcagaagcagggatctttggataactcgaaaaccgagctgtat 404
Query: 907 gtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 403 gtaaagaacctacagatggaaggcaggtacctccgtgatgtgtggt 358
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 225 gagttaatcggtgtaattctttgacatctaac 194
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 84 atcatacagtttgagatgag 65
>gb|BQ664626.1|BQ664626 HV04C11u HV Hordeum vulgare subsp. vulgare cDNA clone HV04C11
3-PRIME, mRNA sequence
Length = 583
Score = 202 bits (102), Expect = 2e-050
Identities = 195/226 (86%)
Strand = Plus / Minus
Query: 727 aaagaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctca 786
|||||||||||||||||||||||| | || |||||||| || ||||||||| |||||||
Sbjct: 581 aaagaatatgtgcagcataagatgattgacaaggccaccgagatttggaacgtcatctct 522
Query: 787 aatggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaa 846
| ||||||||| |||||||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 521 caaggtggttacatatatgtttgtggtgatgccaagggcatggcgaaggatgtacacagg 462
Query: 847 atgcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctat 906
| ||||| |||||||| || |||||||||||||||||||||| ||||||||| |||
Sbjct: 461 gttcttcacacaatagttcagaagcagggatctttggataactcgaaaaccgagctgtat 402
Query: 907 gtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 401 gtaaagaacctacagatggaaggcaggtacctccgtgatgtgtggt 356
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 223 gagttaatcggtgtaattctttgacatctaac 192
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 82 atcatacagtttgagatgag 63
>gb|CB876029.1|CB876029 HX10B04w HX Hordeum vulgare subsp. vulgare cDNA clone HX10B04
3-PRIME, mRNA sequence
Length = 579
Score = 198 bits (100), Expect = 3e-049
Identities = 193/224 (86%)
Strand = Plus / Minus
Query: 729 agaatatgtgcagcataagatggtggaaaaggccacagatatttggaacatcatctcaaa 788
|||||||||||||||||||||| | || |||||||| || ||||||||| ||||||| |
Sbjct: 579 agaatatgtgcagcataagatgattgacaaggccaccgagatttggaacgtcatctctca 520
Query: 789 tggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaat 848
||||||||| |||||||||| |||||||||||||| ||||| | |||||||||| |
Sbjct: 519 aggtggttacatatatgtttgtggtgatgccaagggcatggcgaaggatgtacacagggt 460
Query: 849 gcttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgt 908
||||| |||||||| || |||||||||||||||||||||| ||||||||| |||||
Sbjct: 459 tcttcacacaatagttcagaagcagggatctttggataactcgaaaaccgagctgtatgt 400
Query: 909 aaagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 399 aaagaacctacagatggaaggcaggtacctccgtgatgtgtggt 356
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 223 gagttaatcggtgtaattctttgacatctaac 192
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 82 atcatacagtttgagatgag 63
>gb|BE559321.1|BE559321 HV_CEb0024B17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024B17f, mRNA sequence
Length = 743
Score = 172 bits (87), Expect = 2e-041
Identities = 141/159 (88%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||||||||||||||||| |||||||| | || ||||||||||
Sbjct: 585 gtaccttacgaactgcacttctacgatatgctgacttactcaattcgccaaagaaggctg 644
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||| |||||||||| ||||||| ||||| ||| |||||||||||||||| ||||| |
Sbjct: 645 ctttgactgctttagctgctcatgcttctgacccaactgaagctgaacgactgaggtttt 704
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatgga 178
|||| |||||||||||||||||||||||| |||||||||
Sbjct: 705 tggcttctcctgctggaaaggatgagtatgctcaatgga 743
>gb|AJ460229.1|AJ460229 AJ460229 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073H02F1, mRNA sequence
Length = 360
Score = 167 bits (84), Expect = 1e-039
Identities = 168/196 (85%)
Strand = Plus / Plus
Query: 757 aaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgat 816
|||||||| || ||||||||| ||||||| | ||||||||| |||||||||| ||||||
Sbjct: 17 aaggccaccgagatttggaacgtcatctctcaaggtggttacatatatgtttgtggtgat 76
Query: 817 gccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcaggga 876
|||||||| ||||| | |||||||||| | ||||| |||||||| || ||||||||
Sbjct: 77 gccaagggcatggcgaaggatgtacacagggttcttcacacaatagttcagaagcaggga 136
Query: 877 tctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggtac 936
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct: 137 tctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggcaggtac 196
Query: 937 ctccgtgatgtatggt 952
||||||||||| ||||
Sbjct: 197 ctccgtgatgtgtggt 212
>gb|BU986511.1|BU986511 HF12B08r HF Hordeum vulgare subsp. vulgare cDNA clone HF12B08
5-PRIME, mRNA sequence
Length = 589
Score = 167 bits (84), Expect = 1e-039
Identities = 168/196 (85%)
Strand = Plus / Plus
Query: 757 aaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgat 816
|||||||| || ||||||||| ||||||| | ||||||||| |||||||||| ||||||
Sbjct: 18 aaggccaccgagatttggaacgtcatctctcaaggtggttacatatatgtttgtggtgat 77
Query: 817 gccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcaggga 876
|||||||| ||||| | |||||||||| | ||||| |||||||| || ||||||||
Sbjct: 78 gccaagggcatggcgaaggatgtacacagggttcttcacacaatagttcagaagcaggga 137
Query: 877 tctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggtac 936
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct: 138 tctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggcaggtac 197
Query: 937 ctccgtgatgtatggt 952
||||||||||| ||||
Sbjct: 198 ctccgtgatgtgtggt 213
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 487 atcatacagtttgagatgag 506
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 346 gagttaatcggtgtaattctttgacatctaac 377
>gb|AL501545.1|AL501545 AL501545 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04I24u 3', mRNA sequence
Length = 569
Score = 161 bits (81), Expect = 7e-038
Identities = 167/196 (85%)
Strand = Plus / Minus
Query: 757 aaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgat 816
|||||||| || ||||||||| ||||||| | |||||| || |||||||||| ||||||
Sbjct: 569 aaggccaccgagatttggaacgtcatctctcaaggtggtnacatatatgtttgtggtgat 510
Query: 817 gccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcaggga 876
|||||||| ||||| | |||||||||| | ||||| |||||||| || ||||||||
Sbjct: 509 gccaagggcatggcgaaggatgtacacagggttcttcacacaatagttcagaagcaggga 450
Query: 877 tctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggtac 936
|||||||||||||| ||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct: 449 tctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggcaggtac 390
Query: 937 ctccgtgatgtatggt 952
||||||||||| ||||
Sbjct: 389 ctccgtgatgtgtggt 374
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 241 gagttaatcggtgtaattctttgacatctaac 210
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 100 atcatacagtttgagatgag 81
>gb|CA016485.1|CA016485 HV08K11u HV Hordeum vulgare subsp. vulgare cDNA clone HV08K11
3-PRIME, mRNA sequence
Length = 542
Score = 159 bits (80), Expect = 3e-037
Identities = 158/184 (85%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||||| ||||||| | ||||||||| |||||||||| |||||||||||||| |||
Sbjct: 539 atttggaacgtcatctctcaaggtggttacatatatgtttgtggtgatgccaagggcatg 480
Query: 829 gctagagatgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataac 888
|| | |||||||||| | ||||| |||||||| || ||||||||||||||||||||
Sbjct: 479 gcgaaggatgtacacagggttcttcacacaatagttcagaagcagggatctttggataac 420
Query: 889 tccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgta 948
|| ||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 419 tcgaaaaccgagctgtatgtaaagaacctacagatggaaggcaggtacctccgtgatgtg 360
Query: 949 tggt 952
||||
Sbjct: 359 tggt 356
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 223 gagttaatcggtgtaattctttgacatctaac 192
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 82 atcatacagtttgagatgag 63
>gb|AV922348.1|AV922348 AV922348 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags3n02 3', mRNA sequence
Length = 459
Score = 149 bits (75), Expect = 3e-034
Identities = 141/163 (86%)
Strand = Plus / Minus
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatg 849
||||||||| |||||||||| |||||||||||||| ||||| | |||||||||| |
Sbjct: 449 ggtggttacatatatgtttgtggtgatgccaagggcatggcgaaggatgtacacagggtt 390
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||
Sbjct: 389 cttcacacaatagttcagaagcagggatctttggataactcgaaaaccgagctgtatgta 330
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
|||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 329 aagaacctacagatggaaggcaggtacctccgtgatgtgtggt 287
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 154 gagttaatcggtgtaattctttgacatctaac 123
>gb|BE214596.2|BE214596 HV_CEb0003O18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003O18f, mRNA sequence
Length = 706
Score = 145 bits (73), Expect = 4e-033
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||| ||||||||||||| |||||||| || ||||||||||
Sbjct: 523 gtaccttacgaactgcacttgtacgatatgctgacttactcaattgcccaaagaaggctg 582
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||| |||||||||| ||||||| ||||| ||| |||||||||||||||| ||| | |
Sbjct: 583 ctttgactgctttagctgctcatgcttctgacccacctgaagctgaacgactgagggttt 642
Query: 140 tggcctctcctgctggaaaggatgagtattctcaatggata 180
|||| |||||||||||||||||||||||| || ||||||||
Sbjct: 643 tggcttctcctgctggaaaggatgagtatgcttaatggata 683
>gb|BI952927.1|BI952927 HVSMEm0008H15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0008H15f, mRNA sequence
Length = 575
Score = 143 bits (72), Expect = 2e-032
Identities = 153/180 (85%)
Strand = Plus / Plus
Query: 773 ggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatggcta 832
||||| ||||||| | ||||||||| |||||||||| |||||||||||||| ||||| |
Sbjct: 15 ggaacgtcatctctcaaggtggttacatatatgtttgtggtgatgccaagggcatggcga 74
Query: 833 gagatgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataactcca 892
|||||||||| | ||||| |||||||| || |||||||||||||||||||||| |
Sbjct: 75 aggatgtacacagggttcttcacacaatagttcagaagcagggatctttggataactcga 134
Query: 893 aaaccgagagctatgtaaagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
|||||||| |||||||||| ||| |||| |||||| ||||||||||||||||| ||||
Sbjct: 135 aaaccgagctgtatgtaaagaacctacagagggaaggcaggtacctccgtgatgtgtggt 194
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 468 atcatacagtttgagatgag 487
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 327 gagttaatcggtgtaattctttgacatctaac 358
>gb|BE437783.1|BE437783 SFR007.E01F990616 ITEC SFR Barley Leaf Epidermis Library Hordeum
vulgare subsp. vulgare cDNA clone SF, mRNA sequence
Length = 390
Score = 125 bits (63), Expect = 4e-027
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||||||||||||||||| |||||||| | || ||||||||||
Sbjct: 260 gtaccttacgaactgcacttctacgatatgctgacttactcaattcgccaaagaaggctg 319
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttct 139
||||| |||||||||| ||||||| ||||| |||||||||||||||||||| ||| | |
Sbjct: 320 ctttgactgctttagctgctcatgcttctgacccagctgaagctgaacgactgaggattt 379
Query: 140 tggcctctcct 150
|||| ||||||
Sbjct: 380 tggcttctcct 390
>gb|AL503659.1|AL503659 AL503659 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02P18T 5', mRNA sequence
Length = 696
Score = 119 bits (60), Expect = 2e-025
Identities = 162/196 (82%)
Strand = Plus / Plus
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||| || || || |||| ||||| || | ||||||||||||||||||
Sbjct: 70 gatactactcaatatcttcctcaccaagaatggcaccaacaagaattcatgtaacatgtt 129
Query: 344 cattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttcaacatgga 403
|| ||||| |||||| || || ||||||||||| ||||||||||||| || ||||
Sbjct: 130 cactagttcatgggcaaagccccactggaaggatccataaaggagtttgttccacttgga 189
Query: 404 tgaagaatacaattcctctggaatatagcgaagaatgcagctgggctcccatatttgtga 463
|||||||| ||| ||| |||| | ||||||||||||||||||||||| || |||||||
Sbjct: 190 tgaagaattcaactccatcggaagagagcgaagaatgcagctgggctccaatttttgtga 249
Query: 464 ggcagtcaaatttcaa 479
|||||||||| |||||
Sbjct: 250 ggcagtcaaacttcaa 265
>gb|BU985246.1|BU985246 HF06J02r HF Hordeum vulgare subsp. vulgare cDNA clone HF06J02
5-PRIME, mRNA sequence
Length = 623
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaa 207
|||||||||||| | || |||||||| ||||||| |||||||| || ||||| | |||
Sbjct: 237 cctgctggaaagaaagaatattctcagtggataatcgctagtcaaagaagtctcttggaa 296
Query: 208 gttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagct 267
||||| | | || || ||||| || || || || || || || || ||||| || |||
Sbjct: 297 gttatttcggagtttccatcagcgaaacctccgcttggtgtcttctttgcagctattgct 356
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
||||| || || || ||||||||||||| || || || |||| ||||| || | |||
Sbjct: 357 cctcgccttcagccgagatactactcaatatcttcctcaccaagaatggcaccaacaaga 416
Query: 328 attcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaagga 387
||||||||||||||| || ||||| |||||| || || ||||||||||| |||||
Sbjct: 417 attcatgtaacatgttcactagttcatgggcaaagccccactggaaggatccataaagga 476
Query: 388 gtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgcagctgg 447
|||||||| || |||||||||||| ||| ||| |||| | ||||||||||||||||||
Sbjct: 477 gtttgttccacttggatgaagaattcaactccatcggaagagagcgaagaatgcagctgg 536
Query: 448 gctcccatatttgtgaggcagtcaaatttcaa 479
||||| || ||||||||||||||||| |||||
Sbjct: 537 gctccaatttttgtgaggcagtcaaacttcaa 568
Score = 44.1 bits (22), Expect = 0.012
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| | ||| |||| |||||| || ||| |||||||| ||| ||||||
Sbjct: 133 gatatgccgatctgttgaattcacctaagaagagtgttttacttgctttggctgctcatg 192
Query: 104 catctgatcc 113
||||||||||
Sbjct: 193 catctgatcc 202
>gb|BU986846.1|BU986846 HF13B07r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B07
5-PRIME, mRNA sequence
Length = 552
Score = 119 bits (60), Expect = 2e-025
Identities = 162/196 (82%)
Strand = Plus / Plus
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||| || || || |||| ||||| || | ||||||||||||||||||
Sbjct: 125 gatactactcaatatcttcctcaccaagaatggcaccaacaagaattcatgtaacatgtt 184
Query: 344 cattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttcaacatgga 403
|| ||||| |||||| || || ||||||||||| ||||||||||||| || ||||
Sbjct: 185 cactagttcatgggcaaagccccactggaaggatccataaaggagtttgttccacttgga 244
Query: 404 tgaagaatacaattcctctggaatatagcgaagaatgcagctgggctcccatatttgtga 463
|||||||| ||| ||| |||| | ||||||||||||||||||||||| || |||||||
Sbjct: 245 tgaagaattcaactccatcggaagagagcgaagaatgcagctgggctccaatttttgtga 304
Query: 464 ggcagtcaaatttcaa 479
|||||||||| |||||
Sbjct: 305 ggcagtcaaacttcaa 320
>gb|BG418316.1|BG418316 HVSMEk0022E18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022E18f, mRNA sequence
Length = 502
Score = 109 bits (55), Expect = 2e-022
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 850 cttcatacaatagtccaagagcagggatctttggataactccaaaaccgagagctatgta 909
||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||
Sbjct: 497 cttcacacaatagttcagaagcagggatctttggataactcgaaaaccgagctgtatgta 438
Query: 910 aagagcctgcagatggaaggaaggtacctccgtgatgtatggt 952
|||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 437 aagaacctacagatggaaggcaggtacctccgtgatgtgtggt 395
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 262 gagttaatcggtgtaattctttgacatctaac 231
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 121 atcatacagtttgagatgag 102
>gb|BI776655.2|BI776655 EBpi07_SQ001_E16_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_E16 5', mRNA sequence
Length = 419
Score = 101 bits (51), Expect = 6e-020
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 870 gcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||
Sbjct: 1 gcagggatctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaagg 60
Query: 930 aaggtacctccgtgatgtatggt 952
||||||||||||||||| ||||
Sbjct: 61 caggtacctccgtgatgtgtggt 83
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 357 atcatacagtttgagatgag 376
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 216 gagttaatcggtgtaattctttgacatctaac 247
>gb|BQ469672.1|BQ469672 HZ01I06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01I06
5-PRIME, mRNA sequence
Length = 446
Score = 97.6 bits (49), Expect = 9e-019
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 872 agggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaa 931
||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||| |
Sbjct: 8 agggatctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggca 67
Query: 932 ggtacctccgtgatgtatggt 952
|||||||||||||||| ||||
Sbjct: 68 ggtacctccgtgatgtgtggt 88
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 362 atcatacagtttgagatgag 381
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 221 gagttaatcggtgtaattctttgacatctaac 252
>gb|BQ665903.1|BQ665903 HZ01I06u HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01I06
3-PRIME, mRNA sequence
Length = 446
Score = 97.6 bits (49), Expect = 9e-019
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 872 agggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaa 931
||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||||| |
Sbjct: 439 agggatctttggataactcgaaaaccgagctgtatgtaaagaacctacagatggaaggca 380
Query: 932 ggtacctccgtgatgtatggt 952
|||||||||||||||| ||||
Sbjct: 379 ggtacctccgtgatgtgtggt 359
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 226 gagttaatcggtgtaattctttgacatctaac 195
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 85 atcatacagtttgagatgag 66
>gb|BU972360.1|BU972360 HB21G23r BC Hordeum vulgare subsp. vulgare cDNA clone HB21G23
5-PRIME, mRNA sequence
Length = 563
Score = 77.8 bits (39), Expect = 8e-013
Identities = 234/299 (78%)
Strand = Plus / Plus
Query: 148 cctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaa 207
|||||||||||| | || |||||||| ||||||| |||||||| || ||||| | |||
Sbjct: 265 cctgctggaaagaaagaatattctcagtggataatcgctagtcaaagaagtctcttggaa 324
Query: 208 gttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagct 267
||||| | | || || ||||| || || || || || || || || ||||| || |||
Sbjct: 325 gttatttcggagtttccatcagcgaaacctccgcttggtgtcttctttgcagctattgct 384
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
||||| || || || ||||||||||||| || || || |||| ||||| || | |||
Sbjct: 385 cctcgccttcagccgagatactactcaatatcttcctcaccaagaatggcaccaacaaga 444
Query: 328 attcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaagga 387
||||||||||||||| || ||||| |||||| || || ||||||||||| |||||
Sbjct: 445 attcatgtaacatgttcactagttcatgggcaaagccccactggaaggatccataaagga 504
Query: 388 gtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgcagctg 446
|||||||| || |||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 505 gtttgttccacttggatgaagaattcaactccatcggaagagagcgaagaatgcagctg 563
Score = 44.1 bits (22), Expect = 0.012
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| | ||| |||| |||||| || ||| |||||||| ||| ||||||
Sbjct: 161 gatatgccgatctgttgaattcacctaagaagagtgttttacttgctttggctgctcatg 220
Query: 104 catctgatcc 113
||||||||||
Sbjct: 221 catctgatcc 230
>gb|BF616053.1|BF616053 HVSMEc0001F09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0001F09f, mRNA sequence
Length = 630
Score = 67.9 bits (34), Expect = 8e-010
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 430 agcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct: 79 agcgaagaatgtagctgggctccaatttttgtgaggcagtcaaacttcaa 128
>gb|BM368693.2|BM368693 EBem08_SQ004_F13_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_F13 5', mRNA sequence
Length = 430
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 436 gaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 1 gaatgcagctgggctccaatttttgtgaggcagtcaaacttcaa 44
>gb|BF256187.3|BF256187 HVSMEf0009A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009A18f, mRNA sequence
Length = 763
Score = 56.0 bits (28), Expect = 3e-006
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 20 gtaccttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctg 79
||||||| || ||||| ||||||||||||||||| |||| ||| | || |||||||||
Sbjct: 592 gtaccttacgaactgcacttctacgatatgctgacttacttaattcgccaaagaaggctt 651
Query: 80 ctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgact 131
||| ||||||| || ||||||| ||||| || || |||||||||||||
Sbjct: 652 gcttgactgctttaactgctcatgcttctgaacccacttaagctgaacgact 703
>gb|BJ470058.1|BJ470058 BJ470058 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15b02 5', mRNA sequence
Length = 338
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 252 atcatacagtttgagatgag 271
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 111 gagttaatcggtgtaattctttgacatctaac 142
>gb|BJ470477.1|BJ470477 BJ470477 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22l10 5', mRNA sequence
Length = 193
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 77 gagttaatcggtgtaattctttgacatctaac 108
>gb|BJ473530.1|BJ473530 BJ473530 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15b02 3', mRNA sequence
Length = 289
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 192 gagttaatcggtgtaattctttgacatctaac 161
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 51 atcatacagtttgagatgag 32
>gb|BJ474834.1|BJ474834 BJ474834 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22l10 3', mRNA sequence
Length = 277
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1083 gagttgatcagtgcaattctttgacatctaac 1114
||||| ||| ||| ||||||||||||||||||
Sbjct: 180 gagttaatcggtgtaattctttgacatctaac 149
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1227 atcatacagtttgagatgag 1246
||||||||||||||||||||
Sbjct: 39 atcatacagtttgagatgag 20
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,928
Number of Sequences: 312970
Number of extensions: 111928
Number of successful extensions: 28008
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27881
Number of HSP's gapped (non-prelim): 121
length of query: 1340
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1321
effective length of database: 169,188,109
effective search space: 223497491989
effective search space used: 223497491989
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)