BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192909.2.3
(674 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG345064.2|BG345064 HVSMEg0018I07f Hordeum vulgare pre-a... 325 1e-087
gb|BU969768.1|BU969768 HB12J07r BC Hordeum vulgare subsp. v... 325 1e-087
gb|CB874364.1|CB874364 HX05A22w HX Hordeum vulgare subsp. v... 325 1e-087
gb|BQ762437.1|BQ762437 EBro01_SQ005_H23_R root, 3 week, hyd... 311 2e-083
gb|CB881059.1|CB881059 HM08K10w HM Hordeum vulgare subsp. v... 311 2e-083
gb|AL511495.1|AL511495 AL511495 Hordeum vulgare Barke devel... 305 1e-081
gb|CB882078.1|CB882078 HM11M20w HM Hordeum vulgare subsp. v... 303 4e-081
gb|AL501186.1|AL501186 AL501186 Hordeum vulgare Barke roots... 299 6e-080
gb|BQ661663.1|BQ661663 HM04K24u HM Hordeum vulgare subsp. v... 250 5e-065
gb|CK122964.1|CK122964 BES1824101i06 BES1824 Hordeum vulgar... 238 2e-061
gb|BU997286.1|BU997286 HI07I07r HI Hordeum vulgare subsp. v... 236 8e-061
gb|BI957043.1|BI957043 HVSMEn0007B24f Hordeum vulgare rachi... 222 1e-056
gb|BI959354.1|BI959354 HVSMEn0019F13f Hordeum vulgare rachi... 222 1e-056
gb|BI959736.1|BI959736 HVSMEn0021B08f Hordeum vulgare rachi... 222 1e-056
gb|BQ661260.1|BQ661260 HM02K23u HM Hordeum vulgare subsp. v... 216 7e-055
gb|BI959887.1|BI959887 HVSMEn0022D15f Hordeum vulgare rachi... 214 3e-054
gb|BF259059.3|BF259059 HVSMEf0017I24f Hordeum vulgare seedl... 200 4e-050
gb|BF260117.2|BF260117 HVSMEf0021C12f Hordeum vulgare seedl... 194 3e-048
gb|BQ768004.1|BQ768004 EBro08_SQ010_M12_R root, 3 week, dro... 188 2e-046
gb|BF257029.2|BF257029 HVSMEf0011K17f Hordeum vulgare seedl... 182 1e-044
gb|AL503031.1|AL503031 AL503031 Hordeum vulgare Barke roots... 180 4e-044
gb|BI960224.1|BI960224 HVSMEn0023M14f Hordeum vulgare rachi... 180 4e-044
gb|AL503024.1|AL503024 AL503024 Hordeum vulgare Barke roots... 176 6e-043
gb|BF257679.2|BF257679 HVSMEf0013I17f Hordeum vulgare seedl... 176 6e-043
gb|BE421983.1|BE421983 HWM018cA.04r ITEC HWM Barley Leaf Li... 174 2e-042
gb|AL511163.1|AL511163 AL511163 Hordeum vulgare Barke devel... 174 2e-042
gb|BI960616.1|BI960616 HVSMEn0025G07f Hordeum vulgare rachi... 172 1e-041
gb|CB881619.1|CB881619 HM10F21w HM Hordeum vulgare subsp. v... 170 4e-041
gb|AL505122.1|AL505122 AL505122 Hordeum vulgare Barke roots... 161 4e-038
gb|BM443031.2|BM443031 EBro02_SQ002_E04_R root, 3 week, hyd... 153 9e-036
gb|BF263008.3|BF263008 HV_CEa0005I22f Hordeum vulgare seedl... 149 1e-034
gb|BI956488.1|BI956488 HVSMEn0003K24f Hordeum vulgare rachi... 125 2e-027
gb|BI957415.1|BI957415 HVSMEn0009H02f Hordeum vulgare rachi... 125 2e-027
gb|AL501895.1|AL501895 AL501895 Hordeum vulgare Barke roots... 119 1e-025
gb|AL504589.1|AL504589 AL504589 Hordeum vulgare Barke roots... 103 7e-021
gb|BI960117.1|BI960117 HVSMEn0023E17f Hordeum vulgare rachi... 101 3e-020
gb|BQ760872.1|BQ760872 EBro03_SQ003_L10_R root, 3 week, wat... 101 3e-020
gb|CX662387.1|CX662387 EST 178 Expressed sequences from Bar... 98 5e-019
gb|CX662537.1|CX662537 EST 355 Expressed sequences from Bar... 98 5e-019
gb|AL501253.1|AL501253 AL501253 Hordeum vulgare Barke roots... 92 3e-017
gb|BM817348.1|BM817348 HC105H12_T3.ab1 HC Hordeum vulgare s... 82 3e-014
gb|BQ472723.1|BQ472723 HB01K23r BC Hordeum vulgare subsp. v... 82 3e-014
gb|BQ756546.1|BQ756546 EBem09_SQ003_A13_R embryo, 1 Day ger... 82 3e-014
gb|BF260877.2|BF260877 HVSMEf0023C21f Hordeum vulgare seedl... 74 7e-012
gb|BF256678.3|BF256678 HVSMEf0010L01f Hordeum vulgare seedl... 74 7e-012
gb|AJ433184.1|AJ433184 AJ433184 S00002 Hordeum vulgare subs... 74 7e-012
gb|BF257544.2|BF257544 HVSMEf0013D06f Hordeum vulgare seedl... 72 3e-011
gb|BF256785.2|BF256785 HVSMEf0011A04f Hordeum vulgare seedl... 66 2e-009
gb|BM444496.1|BM444496 EBem09_SQ005_H02_R embryo, 1 Day ger... 66 2e-009
gb|BU966914.1|BU966914 HB02L24r BC Hordeum vulgare subsp. v... 66 2e-009
gb|AL505163.1|AL505163 AL505163 Hordeum vulgare Barke roots... 64 6e-009
gb|AL500065.1|AL500065 AL500065 Hordeum vulgare Barke etiol... 58 4e-007
gb|AV917656.1|AV917656 AV917656 K. Sato unpublished cDNA li... 58 4e-007
gb|AV918498.1|AV918498 AV918498 K. Sato unpublished cDNA li... 58 4e-007
gb|AV920163.1|AV920163 AV920163 K. Sato unpublished cDNA li... 58 4e-007
gb|AV921873.1|AV921873 AV921873 K. Sato unpublished cDNA li... 58 4e-007
gb|AV930818.1|AV930818 AV930818 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ466353.1|BJ466353 BJ466353 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ466470.1|BJ466470 BJ466470 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ466471.1|BJ466471 BJ466471 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ468102.1|BJ468102 BJ468102 K. Sato unpublished cDNA li... 58 4e-007
gb|BQ471958.1|BQ471958 HV03P22r HV Hordeum vulgare subsp. v... 58 4e-007
gb|BQ472105.1|BQ472105 HV04G21r HV Hordeum vulgare subsp. v... 58 4e-007
gb|BQ657250.1|BQ657250 HA09B21u HA Hordeum vulgare subsp. v... 58 4e-007
gb|BQ662057.1|BQ662057 HR01G02u HR Hordeum vulgare subsp. v... 54 6e-006
gb|BI957114.1|BI957114 HVSMEn0007I18f Hordeum vulgare rachi... 50 9e-005
gb|BI959122.1|BI959122 HVSMEn0018E10f Hordeum vulgare rachi... 50 9e-005
gb|BJ466778.1|BJ466778 BJ466778 K. Sato unpublished cDNA li... 50 9e-005
gb|AL502439.1|AL502439 AL502439 Hordeum vulgare Barke roots... 46 0.001
gb|AJ461125.1|AJ461125 AJ461125 S00002 Hordeum vulgare subs... 46 0.001
gb|AJ461126.1|AJ461126 AJ461126 S00002 Hordeum vulgare subs... 46 0.001
gb|AL509218.1|AL509218 AL509218 Hordeum vulgare Barke devel... 44 0.006
gb|BF255126.2|BF255126 HVSMEf0006A10f Hordeum vulgare seedl... 44 0.006
gb|BI960352.1|BI960352 HVSMEn0024F05f Hordeum vulgare rachi... 44 0.006
gb|AJ462910.1|AJ462910 AJ462910 S00002 Hordeum vulgare subs... 44 0.006
gb|AJ462913.1|AJ462913 AJ462913 S00002 Hordeum vulgare subs... 44 0.006
gb|AJ462914.1|AJ462914 AJ462914 S00002 Hordeum vulgare subs... 44 0.006
gb|AJ462915.1|AJ462915 AJ462915 S00002 Hordeum vulgare subs... 44 0.006
gb|BQ767997.1|BQ767997 EBro08_SQ010_L11_R root, 3 week, dro... 44 0.006
gb|AL506804.1|AL506804 AL506804 Hordeum vulgare Barke devel... 42 0.023
gb|AV836278.1|AV836278 AV836278 K. Sato unpublished cDNA li... 42 0.023
gb|BF628262.2|BF628262 HVSMEb0003J01f Hordeum vulgare seedl... 42 0.023
gb|BI947460.1|BI947460 HVSMEl0005I23f Hordeum vulgare spike... 42 0.023
gb|BI953892.1|BI953892 HVSMEm0015D20f Hordeum vulgare green... 42 0.023
gb|BI957840.1|BI957840 HVSMEn0011J23f Hordeum vulgare rachi... 42 0.023
gb|BF266862.2|BF266862 HV_CEa0016E07f Hordeum vulgare seedl... 42 0.023
gb|BG344520.2|BG344520 HVSMEg0009I03f Hordeum vulgare pre-a... 42 0.023
gb|BQ739838.1|BQ739838 HB04B09 HB Hordeum vulgare subsp. vu... 42 0.023
gb|BM372314.2|BM372314 EBro03_SQ004_J22_R root, 3 week, wat... 42 0.023
gb|BQ753661.1|BQ753661 EBan01_SQ004_O04_R anther, yellow st... 42 0.023
gb|BU996642.1|BU996642 HM14E08r HM Hordeum vulgare subsp. v... 42 0.023
gb|BU996717.1|BU996717 HM14I08r HM Hordeum vulgare subsp. v... 42 0.023
gb|CA001434.1|CA001434 HS17O03u HS Hordeum vulgare subsp. v... 42 0.023
gb|CA021374.1|CA021374 HZ39O16r HZ Hordeum vulgare subsp. v... 42 0.023
gb|BF254437.3|BF254437 HVSMEf0004A08f Hordeum vulgare seedl... 38 0.36
>gb|BG345064.2|BG345064 HVSMEg0018I07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018I07f, mRNA sequence
Length = 621
Score = 325 bits (164), Expect = 1e-087
Identities = 278/316 (87%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 369 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 310
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 309 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 250
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 249 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 190
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 189 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 130
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 129 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 70
Query: 653 tgaggatggcgtcgcc 668
||||||||||||||||
Sbjct: 69 tgaggatggcgtcgcc 54
>gb|BU969768.1|BU969768 HB12J07r BC Hordeum vulgare subsp. vulgare cDNA clone HB12J07
5-PRIME, mRNA sequence
Length = 488
Score = 325 bits (164), Expect = 1e-087
Identities = 278/316 (87%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 381 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 322
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 321 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 262
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 261 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 202
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 201 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 142
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 141 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 82
Query: 653 tgaggatggcgtcgcc 668
||||||||||||||||
Sbjct: 81 tgaggatggcgtcgcc 66
>gb|CB874364.1|CB874364 HX05A22w HX Hordeum vulgare subsp. vulgare cDNA clone HX05A22
3-PRIME, mRNA sequence
Length = 646
Score = 325 bits (164), Expect = 1e-087
Identities = 278/316 (87%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 237 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 296
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 297 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 356
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 357 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 416
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 417 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 476
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 477 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 536
Query: 653 tgaggatggcgtcgcc 668
||||||||||||||||
Sbjct: 537 tgaggatggcgtcgcc 552
>gb|BQ762437.1|BQ762437 EBro01_SQ005_H23_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H23 5', mRNA sequence
Length = 643
Score = 311 bits (157), Expect = 2e-083
Identities = 278/317 (87%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 392 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 333
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 332 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 273
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccc-tgcgccttgggggtggcctcc 531
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct: 272 tgtgcgcgagcatgatcatgtcgacgtggaacacccccctgcgccttgggcgtggcctcc 213
Query: 532 gtgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcg 591
| ||| |||||||| | |||||| |||| | |||||||| | ||||||||||||||
Sbjct: 212 gggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcg 153
Query: 592 tagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttc 651
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 152 tagcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttc 93
Query: 652 atgaggatggcgtcgcc 668
|||||||||||||||||
Sbjct: 92 atgaggatggcgtcgcc 76
>gb|CB881059.1|CB881059 HM08K10w HM Hordeum vulgare subsp. vulgare cDNA clone HM08K10
3-PRIME, mRNA sequence
Length = 590
Score = 311 bits (157), Expect = 2e-083
Identities = 273/312 (87%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 279 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 338
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| | | |||||| | |||||||| |||| ||||||||||||
Sbjct: 339 agccggcgcccttggccanggcctcgaactccctctcgtacctctccctgccgccggggt 398
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 399 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 458
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 459 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 518
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 578
Query: 653 tgaggatggcgt 664
||||||||||||
Sbjct: 579 tgaggatggcgt 590
>gb|AL511495.1|AL511495 AL511495 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08E03u 3',
mRNA sequence
Length = 522
Score = 305 bits (154), Expect = 1e-081
Identities = 277/317 (87%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 175 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 234
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 235 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 294
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 295 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 354
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 355 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 414
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggagga-tccacttc 651
| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 415 ancagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggattccacttc 474
Query: 652 atgaggatggcgtcgcc 668
|||||||||||||||||
Sbjct: 475 atgaggatggcgtcgcc 491
>gb|CB882078.1|CB882078 HM11M20w HM Hordeum vulgare subsp. vulgare cDNA clone HM11M20
3-PRIME, mRNA sequence
Length = 492
Score = 303 bits (153), Expect = 4e-081
Identities = 276/316 (87%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 136 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 195
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 196 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 255
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 256 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 315
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 316 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 375
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 376 ancagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggat-cacttca 434
Query: 653 tgaggatggcgtcgcc 668
||||||||||||||||
Sbjct: 435 tgaggatggcgtcgcc 450
>gb|AL501186.1|AL501186 AL501186 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03F14u 3', mRNA sequence
Length = 635
Score = 299 bits (151), Expect = 6e-080
Identities = 276/317 (87%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 232 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 291
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 292 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 351
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 352 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 411
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 412 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 471
Query: 593 agcagttcttgagc-agcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttc 651
|||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct: 472 agcagttcttgagcaagcgtcgcgcagtgctcgtcgctccagtcgtggnggatccacttc 531
Query: 652 atgaggatggcgtcgcc 668
||| |||||||||||||
Sbjct: 532 atgnggatggcgtcgcc 548
>gb|BQ661663.1|BQ661663 HM04K24u HM Hordeum vulgare subsp. vulgare cDNA clone HM04K24
3-PRIME, mRNA sequence
Length = 559
Score = 250 bits (126), Expect = 5e-065
Identities = 243/282 (86%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 278 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 337
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 338 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 397
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 398 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 457
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 458 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 517
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagt 634
| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 518 aacagttcttgagcagcgtcgcgcagtgctcgtcgctccagt 559
>gb|CK122964.1|CK122964 BES1824101i06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I061 5-PRIME, mRNA sequence
Length = 507
Score = 238 bits (120), Expect = 2e-061
Identities = 231/268 (86%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 268 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 209
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 208 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 149
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 148 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 89
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 88 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 29
Query: 593 agcagttcttgagcagcgtggcgcagtg 620
||||||||||||||||||| ||||||||
Sbjct: 28 agcagttcttgagcagcgtcgcgcagtg 1
>gb|BU997286.1|BU997286 HI07I07r HI Hordeum vulgare subsp. vulgare cDNA clone HI07I07
5-PRIME, mRNA sequence
Length = 474
Score = 236 bits (119), Expect = 8e-061
Identities = 230/267 (86%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 267 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 208
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 207 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 148
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 147 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 88
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 87 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 28
Query: 593 agcagttcttgagcagcgtggcgcagt 619
||||||||||||||||||| |||||||
Sbjct: 27 agcagttcttgagcagcgtcgcgcagt 1
>gb|BI957043.1|BI957043 HVSMEn0007B24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007B24f, mRNA sequence
Length = 876
Score = 222 bits (112), Expect = 1e-056
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 198 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 257
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 258 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 317
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||| || |||||||| |||||| ||| || ||||| || |
Sbjct: 318 tgtgcgcgagcatgatcatgtccacatggaacacaccctgcacctcaggcgtggcttctg 377
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
|| |||||||| | |||||| |||| | |||||||| | |||||| ||||| |
Sbjct: 378 gattcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcat 437
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 497
Query: 653 tgaggatggcgtcgcc 668
|||||||||| |||||
Sbjct: 498 tgaggatggcatcgcc 513
>gb|BI959354.1|BI959354 HVSMEn0019F13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F13f, mRNA sequence
Length = 648
Score = 222 bits (112), Expect = 1e-056
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 100 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 159
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 160 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 219
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||| || |||||||| |||||| ||| || ||||| || |
Sbjct: 220 tgtgcgcgagcatgatcatgtccacatggaacacaccctgcacctcaggcgtggcttctg 279
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
|| |||||||| | |||||| |||| | |||||||| | |||||| ||||| |
Sbjct: 280 gattcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcat 339
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 340 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 399
Query: 653 tgaggatggcgtcgcc 668
|||||||||| |||||
Sbjct: 400 tgaggatggcatcgcc 415
>gb|BI959736.1|BI959736 HVSMEn0021B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021B08f, mRNA sequence
Length = 654
Score = 222 bits (112), Expect = 1e-056
Identities = 265/316 (83%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 609 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 550
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 549 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 490
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||| || |||||||| |||||| ||| || ||||| || |
Sbjct: 489 tgtgcgcgagcatgatcatgtccacatggaacacaccctgcacctcaggcgtggcttctg 430
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
|| |||||||| | |||||| |||| | |||||||| | |||||| ||||| |
Sbjct: 429 gattcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcat 370
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 310
Query: 653 tgaggatggcgtcgcc 668
|||||||||| |||||
Sbjct: 309 tgaggatggcatcgcc 294
>gb|BQ661260.1|BQ661260 HM02K23u HM Hordeum vulgare subsp. vulgare cDNA clone HM02K23
3-PRIME, mRNA sequence
Length = 483
Score = 216 bits (109), Expect = 7e-055
Identities = 229/269 (85%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 211 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 270
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | | ||||| ||| ||||||||||||
Sbjct: 271 agccggcgcccttggccagggcctcgaactccctttggtacctttccctgccgccggggt 330
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 331 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 390
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
||| |||||||| | |||||| |||| | |||||||| | |||||||||||||||
Sbjct: 391 ggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgt 450
Query: 593 agcagttcttgagcagcgtggcgcagtgc 621
||||||||||||||||||| |||||||||
Sbjct: 451 agcagttcttgagcagcgtcgcgcagtgc 479
>gb|BI959887.1|BI959887 HVSMEn0022D15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022D15f, mRNA sequence
Length = 661
Score = 214 bits (108), Expect = 3e-054
Identities = 264/316 (83%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||| ||||| |||| ||| | ||| ||
Sbjct: 225 acttggtgaactcgatggcccatgcgttggcgtaaatgtaagtggtcttcatggcggcga 284
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 285 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 344
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||| || |||||||| |||||| ||| || ||||| || |
Sbjct: 345 tgtgcgcgagcatgatcatgtccacatggaacacaccctgcacctcaggcgtggcttctg 404
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
|| |||||||| | |||||| |||| | |||||||| | |||||| ||||| |
Sbjct: 405 gattcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcat 464
Query: 593 agcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttca 652
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 465 agcagttcttgagcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttca 524
Query: 653 tgaggatggcgtcgcc 668
|||||||||| |||||
Sbjct: 525 tgaggatggcatcgcc 540
>gb|BF259059.3|BF259059 HVSMEf0017I24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0017I24f, mRNA sequence
Length = 645
Score = 200 bits (101), Expect = 4e-050
Identities = 254/305 (83%)
Strand = Plus / Minus
Query: 361 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcg 420
|||||||| ||||| ||||| ||||||||||| |||||||||| || ||| ||| ||
Sbjct: 391 aactcgattgcccatgcgttagcgtagatgtaagtggccttgatggaggcgaacccgccg 332
Query: 421 cccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcg 480
|||||||| || | |||||| | ||| |||| |||| | || | ||||||||||||
Sbjct: 331 cccttggccagggcctcgaactccctctcatacctctccctaccacttgggttgtgcgcg 272
Query: 481 agcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgacc 540
|||||||||||||| | || |||||| ||||| ||||| ||||| || |||| |||||||
Sbjct: 271 agcatgatcatgtcaaggttgaacaccccctgtgccttaggggtagcttccgggttgacc 212
Query: 541 ggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgtagcagttc 600
||||| | |||||| |||| | |||||||| | |||||||||||||||||||||||
Sbjct: 211 ggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgtagcagttc 152
Query: 601 ttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttcatgaggatg 660
|| |||||||| ||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 151 ttcagcagcgttgcgcagtgctcgtcgctccagtcatgaaggatccacttcatgaggatg 92
Query: 661 gcgtc 665
|||||
Sbjct: 91 gcgtc 87
>gb|BF260117.2|BF260117 HVSMEf0021C12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021C12f, mRNA sequence
Length = 797
Score = 194 bits (98), Expect = 3e-048
Identities = 253/305 (82%)
Strand = Plus / Minus
Query: 364 tcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcgccc 423
||||||||||| ||||||||||||||||| |||| ||| | ||| ||| ||||||||
Sbjct: 527 tcgatggcccatgcgttggcgtagatgtaagtggtcttcatgacggcgaacccggcgccn 468
Query: 424 ttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcgagc 483
||||| || | |||||| | |||||||| |||| |||| || |||||||||||||||
Sbjct: 467 ttggccagggcctcgaactccctctcgtacctctccctgccacccgggttgtgcgcgagc 408
Query: 484 atgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgaccggc 543
||||||||||| || |||||||| |||||| | | || ||||| || | || ||||||
Sbjct: 407 atgatcatgtccacatggaacacaccctgcacttcaggcgtggcttctggattcaccggc 348
Query: 544 agcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgtagcagttcttg 603
|| | |||||| |||| | |||||||| | |||||| ||||| ||||||||||||
Sbjct: 347 aggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcatagcagttcttg 288
Query: 604 agcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttcatgaggatggcg 663
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agcagcgtcgcgcagtgctcgtcgctccagtcgtggaggatccacttcatgaggatggca 228
Query: 664 tcgcc 668
|||||
Sbjct: 227 tcgcc 223
>gb|BQ768004.1|BQ768004 EBro08_SQ010_M12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_M12 5', mRNA sequence
Length = 431
Score = 188 bits (95), Expect = 2e-046
Identities = 179/207 (86%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 230 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 171
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 170 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 111
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 110 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 51
Query: 533 tgttgaccggcagcacgcactcgacga 559
||| |||||||| | |||||| ||||
Sbjct: 50 ggttcaccggcaggatgcactccacga 24
>gb|BF257029.2|BF257029 HVSMEf0011K17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011K17f, mRNA sequence
Length = 582
Score = 182 bits (92), Expect = 1e-044
Identities = 170/196 (86%)
Strand = Plus / Minus
Query: 470 ggttgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcct 529
||||||||||||||||||||||||| | || |||||| ||||| ||||| ||||| || |
Sbjct: 492 ggttgtgcgcgagcatgatcatgtcaaggttgaacaccccctgtgccttaggggtagctt 433
Query: 530 ccgtgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgt 589
|| |||||||||||| | |||||| |||| | |||||||| | ||||||||||||
Sbjct: 432 acgggttgaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgt 373
Query: 590 cgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccact 649
||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||||||
Sbjct: 372 cgtagcagttcttcagcagcgttgcgcagtgctcgtcgctccagtcatgaaggatccact 313
Query: 650 tcatgaggatggcgtc 665
||||||||||||||||
Sbjct: 312 tcatgaggatggcgtc 297
>gb|AL503031.1|AL503031 AL503031 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H24u 3', mRNA sequence
Length = 573
Score = 180 bits (91), Expect = 4e-044
Identities = 255/307 (83%), Gaps = 2/307 (0%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 205 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 264
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 265 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 324
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||| || |||||||| |||||| ||| || ||||| || |
Sbjct: 325 tgtgcgcgagcatgatcatgtccacatggaacacaccctgcacctcaggcgtggcttctg 384
Query: 533 tgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgt 592
|| |||||||| | |||||| |||| | |||||||| | |||||| ||||| |
Sbjct: 385 gattcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcaaggcgtcat 444
Query: 593 agcagttcttgagcagcgt-ggcgc-agtgcgcgtcgctccagtcgtggaggatccactt 650
||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||
Sbjct: 445 agcagttcttgagcagcgtcgccgcaagtgctcgtcgctccagtcgtggaggatccactt 504
Query: 651 catgagg 657
|||||||
Sbjct: 505 catgagg 511
>gb|BI960224.1|BI960224 HVSMEn0023M14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023M14f, mRNA sequence
Length = 648
Score = 180 bits (91), Expect = 4e-044
Identities = 196/231 (84%)
Strand = Plus / Minus
Query: 438 gaactcgcgctcgtaccgctccttgccgccggggttgtgcgcgagcatgatcatgtcgac 497
|||||| | |||||||| |||| |||| || |||||||||||||||||||||||||| ||
Sbjct: 547 gaactccctctcgtacctctccctgccacccgggttgtgcgcgagcatgatcatgtccac 488
Query: 498 gtggaacacgccctgcgccttgggggtggcctccgtgttgaccggcagcacgcactcgac 557
|||||||| |||||| ||| || ||||| || | || |||||||| | |||||| ||
Sbjct: 487 atggaacacaccctgcacctcaggcgtggcttctggattcaccggcaggatgcactccac 428
Query: 558 gacgatgaccttgccattttccggcagcgcgtcgtagcagttcttgagcagcgtggcgca 617
|| | |||||||| | |||||| ||||| |||||||||||||||||||| |||||
Sbjct: 427 gagcaccaccttgccgtgcgccggcaaggcgtcatagcagttcttgagcagcgtcgcgca 368
Query: 618 gtgcgcgtcgctccagtcgtggaggatccacttcatgaggatggcgtcgcc 668
|||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 367 gtgctcgtcgctccagtcgtggaggatccacttcatgaggatggcatcgcc 317
Score = 65.9 bits (33), Expect = 2e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtgg 397
||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 632 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtgg 588
>gb|AL503024.1|AL503024 AL503024 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H17u 3', mRNA sequence
Length = 465
Score = 176 bits (89), Expect = 6e-043
Identities = 172/200 (86%)
Strand = Plus / Plus
Query: 360 gaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggc 419
|||||||||||| | ||||||||||| |||||||||| ||| | | | |||||||||
Sbjct: 261 gaactcgatggcaaatgcgttggcgtanatgtaggtggtcttcatggctgcgaagccggc 320
Query: 420 gcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgc 479
||||||||| || | |||||| | |||||||| |||| |||||||||||||||||||
Sbjct: 321 gcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggttgtgcgc 380
Query: 480 gagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgac 539
||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||
Sbjct: 381 gagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccgggttcac 440
Query: 540 cggcagcacgcactcgacga 559
|||||| | |||||| ||||
Sbjct: 441 cggcaggatgcactccacga 460
>gb|BF257679.2|BF257679 HVSMEf0013I17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013I17f, mRNA sequence
Length = 524
Score = 176 bits (89), Expect = 6e-043
Identities = 170/197 (86%)
Strand = Plus / Minus
Query: 469 gggttgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcc 528
|||||||||| ||||||||||||||| | || |||||| ||||| || || ||||| ||
Sbjct: 450 gggttgtgcgagagcatgatcatgtcaaggttgaacaccccctgtgctttaggggtagct 391
Query: 529 tccgtgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcg 588
|||| |||||||||||| | |||||| |||| | |||||||| | |||||||||||
Sbjct: 390 tccgggttgaccggcagtatgcactccacgagcaccaccttgccgtgcgccggcagcgcg 331
Query: 589 tcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccac 648
|||||||||||||| |||||||| ||||||||| ||||||||||||| || |||||||||
Sbjct: 330 tcgtagcagttcttcagcagcgttgcgcagtgctcgtcgctccagtcatgaaggatccac 271
Query: 649 ttcatgaggatggcgtc 665
|||||||||||||||||
Sbjct: 270 ttcatgaggatggcgtc 254
>gb|BE421983.1|BE421983 HWM018cA.04r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM018cA.04, mRNA sequence
Length = 664
Score = 174 bits (88), Expect = 2e-042
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 296 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 237
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 236 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 177
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 176 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 117
>gb|AL511163.1|AL511163 AL511163 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07D06u 3',
mRNA sequence
Length = 388
Score = 174 bits (88), Expect = 2e-042
Identities = 157/180 (87%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 209 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 268
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 269 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 328
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 329 tgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 388
>gb|BI960616.1|BI960616 HVSMEn0025G07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G07f, mRNA sequence
Length = 641
Score = 172 bits (87), Expect = 1e-041
Identities = 186/219 (84%)
Strand = Plus / Minus
Query: 450 gtaccgctccttgccgccggggttgtgcgcgagcatgatcatgtcgacgtggaacacgcc 509
||||| |||| |||| || |||||||||||||||||||||||||| || |||||||| ||
Sbjct: 575 gtacctctccctgccacccgggttgtgcgcgagcatgatcatgtccacatggaacacacc 516
Query: 510 ctgcgccttgggggtggcctccgtgttgaccggcagcacgcactcgacgacgatgacctt 569
|||| ||| || ||||| || | || |||||||| | |||||| |||| | |||||
Sbjct: 515 ctgcacctcaggcgtggcttctggattcaccggcaggatgcactccacgagcaccacctt 456
Query: 570 gccattttccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgct 629
||| | |||||| ||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct: 455 gccgtgcgccggcaaggcgtcatagcagttcttgagcagcgtcgcgcagtgctcgtcgct 396
Query: 630 ccagtcgtggaggatccacttcatgaggatggcgtcgcc 668
||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 ccagtcgtggaggatccacttcatgaggatggcatcgcc 357
>gb|CB881619.1|CB881619 HM10F21w HM Hordeum vulgare subsp. vulgare cDNA clone HM10F21
3-PRIME, mRNA sequence
Length = 472
Score = 170 bits (86), Expect = 4e-041
Identities = 164/190 (86%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 268 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 327
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 328 agccggcgcccttggccaggccctcgaactccctctcgtacctctccctgccgccggggt 387
Query: 473 tgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccg 532
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 388 tgtgcgcgagcatgatcctgtcgacgtggaacaccccctgcgccttgggcgtggcctccg 447
Query: 533 tgttgaccgg 542
||| |||||
Sbjct: 448 ggttcaccgg 457
>gb|AL505122.1|AL505122 AL505122 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07H11V 5', mRNA sequence
Length = 667
Score = 161 bits (81), Expect = 4e-038
Identities = 169/197 (85%), Gaps = 1/197 (0%)
Strand = Plus / Minus
Query: 470 ggttgtgcgcgagca-tgatcatgtcgacgtggaacacgccctgcgccttgggggtggcc 528
||||||||||||||| |||||||||| | || |||||| ||||| ||||| ||||| ||
Sbjct: 667 ggttgtgcgcgagcaatgatcatgtcaaggttgaacacaccctgtgccttaggggtagct 608
Query: 529 tccgtgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcg 588
|||| ||||||||||| | |||||| |||| | |||||||| | |||||||||||
Sbjct: 607 tccggattgaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcg 548
Query: 589 tcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccac 648
|||||||||||||| |||||||| || |||||| ||||||||||||| || |||||||||
Sbjct: 547 tcgtagcagttcttcagcagcgttgcacagtgctcgtcgctccagtcatgaaggatccac 488
Query: 649 ttcatgaggatggcgtc 665
|||||||||||||||||
Sbjct: 487 ttcatgaggatggcgtc 471
>gb|BM443031.2|BM443031 EBro02_SQ002_E04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_E04 5', mRNA sequence
Length = 560
Score = 153 bits (77), Expect = 9e-036
Identities = 224/273 (82%)
Strand = Plus / Minus
Query: 361 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcg 420
|||||||| ||||| ||||| ||||||||||| |||||||||| || ||| ||||||
Sbjct: 273 aactcgattgcccatgcgttagcgtagatgtaagtggccttgatggaggcgaacccggcg 214
Query: 421 cccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcg 480
|||||||| || | |||||| | ||| |||| |||| | || || ||||||||||||
Sbjct: 213 cccttggccagggcctcgaactccctctcatacctctccctaccacctgggttgtgcgcg 154
Query: 481 agcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgacc 540
|||||||||||||| | || |||||| ||||| ||||| ||||| || |||| ||||||
Sbjct: 153 agcatgatcatgtcaaggttgaacacaccctgtgccttaggggtagcttccggattgacc 94
Query: 541 ggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgtagcagttc 600
||||| | |||||| |||| | |||||||| | |||||||||||||||||||||||
Sbjct: 93 ggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgtagcagttc 34
Query: 601 ttgagcagcgtggcgcagtgcgcgtcgctccag 633
|| |||||||| || |||||| |||||||||||
Sbjct: 33 ttcagcagcgttgcacagtgctcgtcgctccag 1
>gb|BF263008.3|BF263008 HV_CEa0005I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005I22f, mRNA sequence
Length = 902
Score = 149 bits (75), Expect = 1e-034
Identities = 154/179 (86%), Gaps = 1/179 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtag-gtggccttgaacccggag 411
||||| ||||||||||||| | |||||||||||||| || |||| ||| | | |||
Sbjct: 206 acttggtgaactcgatggcaaatgcgttggcgtagatctaccgtggtcttcatggctgag 147
Query: 412 aagccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccgggg 471
||||||||||||||||| || | |||||| | |||||||| |||| |||||||||||
Sbjct: 146 aagccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccgggg 87
Query: 472 ttgtgcgcgagcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctc 530
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 86 ttgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgccttgggcgtggcctc 28
>gb|BI956488.1|BI956488 HVSMEn0003K24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003K24f, mRNA sequence
Length = 884
Score = 125 bits (63), Expect = 2e-027
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 438 gaactcgcgctcgtaccgctccttgccgccgggg-ttgtgcgcgagcatgatcatgtcga 496
|||||| | |||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 343 gaactccctctcgtacctctccctgccgccgggggttgtgcgcgagcatgatcatgtcga 402
Query: 497 cgtggaacacgccctgcgccttgggggtggcctcc 531
|||||||||| |||||||||||||| |||||||||
Sbjct: 403 cgtggaacaccccctgcgccttgggcgtggcctcc 437
Score = 50.1 bits (25), Expect = 9e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtgg 397
||||| ||||||||||||| | ||||||||||| ||||||||||
Sbjct: 260 acttggtgaactcgatggcaaatgcgttggcgtaaatgtaggtgg 304
>gb|BI957415.1|BI957415 HVSMEn0009H02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009H02f, mRNA sequence
Length = 671
Score = 125 bits (63), Expect = 2e-027
Identities = 78/83 (93%)
Strand = Plus / Minus
Query: 586 gcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatc 645
||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct: 618 gcgtcatagcagttcttgagcagggtcgcgcagtgctcgtcgctccagtcgtggaggatc 559
Query: 646 cacttcatgaggatggcgtcgcc 668
||||||||||||||||| |||||
Sbjct: 558 cacttcatgaggatggcatcgcc 536
>gb|AL501895.1|AL501895 AL501895 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05L23u 3', mRNA sequence
Length = 572
Score = 119 bits (60), Expect = 1e-025
Identities = 200/247 (80%)
Strand = Plus / Plus
Query: 361 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcg 420
|||||||| ||||| ||||| ||||||||||| |||||||||| || ||| ||||||
Sbjct: 229 aactcgattgcccatgcgttagcgtagatgtaagtggccttgatggaggcgaacccggcg 288
Query: 421 cccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcg 480
|||||||| || | |||||| | ||| |||| |||| | || || ||||||||||||
Sbjct: 289 cccttggccagggcctcgaactccctctcatacctctccctaccacctgggttgtgcgcg 348
Query: 481 agcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgacc 540
|||||||||||||| | || |||||| ||||| ||||| ||||| || |||| ||||||
Sbjct: 349 agcatgatcatgtcaaggttgaacacaccctgtgccttaggggtagcttccggattgacc 408
Query: 541 ggcagcacgcactcgacgacgatgaccttgccattttccggcagcgcgtcgtagcagttc 600
||||| | |||||| |||| | |||||||| | |||||||||||||||| ||||||
Sbjct: 409 ggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcgtcgtancagttc 468
Query: 601 ttgagca 607
|| ||||
Sbjct: 469 ttcagca 475
>gb|AL504589.1|AL504589 AL504589 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05L23V 5', mRNA sequence
Length = 692
Score = 103 bits (52), Expect = 7e-021
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 583 agcgcgtcgtagcagttcttgagca-gcgtggcgcagtgcgcgtcgctccagtcgtggag 641
|||||||||||||||||||| |||| |||| || |||||| ||||||||||||| || ||
Sbjct: 690 agcgcgtcgtagcagttcttcagcaagcgttgcacagtgctcgtcgctccagtcatgaag 631
Query: 642 gatccacttcatgaggatggcgtc 665
||||||||||||||||||||||||
Sbjct: 630 gatccacttcatgaggatggcgtc 607
>gb|BI960117.1|BI960117 HVSMEn0023E17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E17f, mRNA sequence
Length = 652
Score = 101 bits (51), Expect = 3e-020
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 603 gagcagcgtggcgcagtgcgcgtcgctccagtcgtggaggatccacttcatgaggatggc 662
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 651 gagcagcgtcgcgcagtgctcgtcgctccagtcgtgnaggatccacttcatgaggatggc 592
Query: 663 gtcgcc 668
|||||
Sbjct: 591 atcgcc 586
>gb|BQ760872.1|BQ760872 EBro03_SQ003_L10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_L10 5', mRNA sequence
Length = 458
Score = 101 bits (51), Expect = 3e-020
Identities = 162/199 (81%)
Strand = Plus / Minus
Query: 361 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcg 420
|||||||| ||||| ||||| ||||||||||| |||||||||| || ||| ||||||
Sbjct: 225 aactcgattgcccatgcgttagcgtagatgtaagtggccttgatggaggcgaacccggcg 166
Query: 421 cccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcg 480
|||||||| || | |||||| | ||| |||| |||| | || || ||||||||||||
Sbjct: 165 cccttggccagggcctcgaactccctctcatacctctccctaccacctgggttgtgcgcg 106
Query: 481 agcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgacc 540
|||||||||||||| | || |||||| ||||| ||||| ||||| || |||| ||||||
Sbjct: 105 agcatgatcatgtcaaggttgaacacaccctgtgccttaggggtagcttccggattgacc 46
Query: 541 ggcagcacgcactcgacga 559
||||| | |||||| ||||
Sbjct: 45 ggcaggatgcactccacga 27
>gb|CX662387.1|CX662387 EST 178 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P178 5', mRNA sequence
Length = 193
Score = 97.6 bits (49), Expect = 5e-019
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 137 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 78
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 77 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 18
Query: 473 tgtgcgcgagcatgatc 489
|||||||||||||||||
Sbjct: 17 tgtgcgcgagcatgatc 1
>gb|CX662537.1|CX662537 EST 355 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P355 5', mRNA sequence
Length = 193
Score = 97.6 bits (49), Expect = 5e-019
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| |||||||||||||||| ||||||||||||||||| |||| ||| | ||| ||
Sbjct: 137 acttggtgaactcgatggcccatgcgttggcgtagatgtaagtggtcttcatggcggcga 78
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
| |||||||||||||| || | |||||| | |||||||| |||| |||| || ||||
Sbjct: 77 acccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacccgggt 18
Query: 473 tgtgcgcgagcatgatc 489
|||||||||||||||||
Sbjct: 17 tgtgcgcgagcatgatc 1
>gb|AL501253.1|AL501253 AL501253 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03J08u 3', mRNA sequence
Length = 452
Score = 91.7 bits (46), Expect = 3e-017
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 361 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaagccggcg 420
|||||||| ||||| ||||| ||||| ||||| |||||||||| || ||| ||||||
Sbjct: 262 aactcgattgcccatgcgttagcgtanatgtaagtggccttgatggaggcgaacccggcg 321
Query: 421 cccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggttgtgcgcg 480
|||||||| || | |||||| | ||| |||| |||| | || || ||||||||||||
Sbjct: 322 cccttggccagggcctcgaactccctctcatacctctccctaccacctgggttgtgcgcg 381
Query: 481 agcatgatcatgtcgacgtggaacacgccctgcgccttgggggtggcctccgtgttgacc 540
|||||||||||||| | || |||||| ||||| ||||| ||||| || |||| ||||||
Sbjct: 382 agcatgatcatgtcaaggttgaacacaccctgtgccttaggggtagcttccggattgacc 441
Query: 541 ggcag 545
|||||
Sbjct: 442 ggcag 446
>gb|BM817348.1|BM817348 HC105H12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105H12_T3.ab1 similar to Myo-inositol
4-O-methyltransferase,Methionine S-methyltransferase,
mRNA sequence
Length = 885
Score = 81.8 bits (41), Expect = 3e-014
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||||||||||||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 643 ccggcagcgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctgaagcagt 584
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 583 tgaggatccacttcatgaggatggcgtctccgg 551
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 381 ggcgtagatgtaggtggccttga 403
|||||||||||||||||||||||
Sbjct: 840 ggcgtagatgtaggtggccttga 818
>gb|BQ472723.1|BQ472723 HB01K23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01K23
5-PRIME, mRNA sequence
Length = 373
Score = 81.8 bits (41), Expect = 3e-014
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 135 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 76
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
|||||||||||||||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 75 agccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccgccggggt 16
Query: 473 tgtgc 477
|||||
Sbjct: 15 tgtgc 11
>gb|BQ756546.1|BQ756546 EBem09_SQ003_A13_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ003_A13 5', mRNA sequence
Length = 530
Score = 81.8 bits (41), Expect = 3e-014
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||||||||||||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 195 ccggcagcgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctgaagcagt 136
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 135 tgaggatccacttcatgaggatggcgtctccgg 103
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 381 ggcgtagatgtaggtggccttga 403
|||||||||||||||||||||||
Sbjct: 392 ggcgtagatgtaggtggccttga 370
>gb|BF260877.2|BF260877 HVSMEf0023C21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023C21f, mRNA sequence
Length = 752
Score = 73.8 bits (37), Expect = 7e-012
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||| ||||||||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 425 ccggcagtgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctaaagcagt 366
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 365 tgaggatccacttcatgaggatggcgtctccgg 333
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 381 ggcgtagatgtaggtggccttga 403
|||||||||||||||||||||||
Sbjct: 622 ggcgtagatgtaggtggccttga 600
>gb|BF256678.3|BF256678 HVSMEf0010L01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010L01f, mRNA sequence
Length = 645
Score = 73.8 bits (37), Expect = 7e-012
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||| ||||||||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 230 ccggcagtgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctaaagcagt 171
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 170 tgaggatccacttcatgaggatggcgtctccgg 138
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 381 ggcgtagatgtaggtggccttga 403
|||||||||||||||||||||||
Sbjct: 427 ggcgtagatgtaggtggccttga 405
>gb|AJ433184.1|AJ433184 AJ433184 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200017F11F1, mRNA sequence
Length = 357
Score = 73.8 bits (37), Expect = 7e-012
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||| ||||||||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 163 ccggcagtgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctaaagcagt 104
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 103 tgaggatccacttcatgaggatggcgtctccgg 71
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 384 gtagatgtaggtggccttga 403
||||||||||||||||||||
Sbjct: 357 gtagatgtaggtggccttga 338
>gb|BF257544.2|BF257544 HVSMEf0013D06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0013D06f, mRNA sequence
Length = 832
Score = 71.9 bits (36), Expect = 3e-011
Identities = 120/148 (81%)
Strand = Plus / Minus
Query: 523 gtggcctccgtgttgaccggcagcacgcactcgacgacgatgaccttgccattttccggc 582
||||| |||| ||| |||||||| || ||||| ||| ||| ||||| |||| |||||
Sbjct: 261 gtggcgtccgggttcaccggcagaacacactccacgttgatcaccttaccatgcgccggc 202
Query: 583 agcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgtggagg 642
|| ||||||||||||||||||||||| |||| || | |||||| || || ||||
Sbjct: 201 agtgcgtcgtagcagttcttgagcaggatggcacactcgtagtcgctaaagcagttgagg 142
Query: 643 atccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||| ||||
Sbjct: 141 atccacttcatgaggatggcgtctccgg 114
>gb|BF256785.2|BF256785 HVSMEf0011A04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011A04f, mRNA sequence
Length = 538
Score = 65.9 bits (33), Expect = 2e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||| |||| |||||||||||||||||| |||| || | ||||||| || ||
Sbjct: 365 ccggcagtgcgtggtagcagttcttgagcaggatggcacactcgtcgtcgctaaagcagt 306
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||||||||||||||||||||| ||||
Sbjct: 305 tgaggatccacttcatgaggatggcgtctccgg 273
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 384 gtagatgtaggtggccttga 403
||||||||||||||||||||
Sbjct: 435 gtagatgtaggtggccttga 416
>gb|BM444496.1|BM444496 EBem09_SQ005_H02_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ005_H02 5', mRNA sequence
Length = 333
Score = 65.9 bits (33), Expect = 2e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 578 ccggcagcgcgtcgtagcagttcttgagcagcgtggcgcagtgcgcgtcgctccagtcgt 637
||||||||||||||||||||||||||||||| |||| || | ||||||| || |
Sbjct: 195 ccggcagcgcgtcgtagcagttcttgagcaggatggcacactcgtcgtcgctgaagcagc 136
Query: 638 ggaggatccacttcatgaggatggcgtcgccgg 670
||||||||| ||||||||||||||||| ||||
Sbjct: 135 tgaggatccagttcatgaggatggcgtctccgg 103
>gb|BU966914.1|BU966914 HB02L24r BC Hordeum vulgare subsp. vulgare cDNA clone HB02L24
5-PRIME, mRNA sequence
Length = 365
Score = 65.9 bits (33), Expect = 2e-009
Identities = 103/125 (82%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 353 acttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggaga 412
||||| ||||||||||||| | |||||||||||||||||||||| ||| | | | ||
Sbjct: 134 acttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttcatggctgcga 75
Query: 413 agccggcgcccttggcgagctcgcggaactcgcgctcgtaccgctccttgccgccggggt 472
||||||||||| |||| || | |||||| | |||||||| |||| ||||||||||||
Sbjct: 74 agccggcgccc-tggccagggcctcgaactccctctcgtacctctccctgccgccggggt 16
Query: 473 tgtgc 477
|||||
Sbjct: 15 tgtgc 11
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,110
Number of Sequences: 312970
Number of extensions: 104110
Number of successful extensions: 33462
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33217
Number of HSP's gapped (non-prelim): 171
length of query: 674
length of database: 175,134,539
effective HSP length: 19
effective length of query: 655
effective length of database: 169,188,109
effective search space: 110818211395
effective search space used: 110818211395
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)