BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192593.2.1
(800 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA li... 480 e-134
gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA li... 480 e-134
gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA li... 448 e-124
gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA li... 440 e-122
gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. v... 432 e-120
gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. v... 410 e-113
gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. v... 406 e-112
gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. v... 394 e-108
gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. v... 365 1e-099
gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. v... 365 1e-099
gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. v... 359 9e-098
gb|AV913129.1|AV913129 AV913129 K. Sato unpublished cDNA li... 341 2e-092
gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day ger... 335 1e-090
gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. v... 333 5e-090
gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. v... 299 7e-080
gb|CA014933.1|CA014933 HT12M08r HT Hordeum vulgare subsp. v... 113 9e-024
gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots... 86 2e-015
gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, sal... 86 2e-015
gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. v... 86 2e-015
gb|CV060332.1|CV060332 BNEL57a10 Barley EST endosperm libra... 74 8e-012
gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedl... 72 3e-011
gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedl... 62 3e-008
gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedl... 62 3e-008
gb|CA027259.1|CA027259 HZ58F19r HZ Hordeum vulgare subsp. v... 58 5e-007
gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike... 54 7e-006
gb|CA012977.1|CA012977 HT07A06r HT Hordeum vulgare subsp. v... 52 3e-005
gb|BG300455.1|BG300455 HVSMEb0017B23f Hordeum vulgare seedl... 46 0.002
gb|AW983019.2|AW983019 HVSMEg0004N09f Hordeum vulgare pre-a... 46 0.002
gb|BE194107.2|BE194107 HVSMEh0084A24f Hordeum vulgare 5-45 ... 46 0.002
gb|BF267540.2|BF267540 HV_CEa0018D16f Hordeum vulgare seedl... 46 0.002
gb|BF267588.2|BF267588 HV_CEa0018F16f Hordeum vulgare seedl... 46 0.002
gb|AV921807.1|AV921807 AV921807 K. Sato unpublished cDNA li... 46 0.002
gb|AV931272.1|AV931272 AV931272 K. Sato unpublished cDNA li... 46 0.002
gb|BM815988.1|BM815988 HC108H09_SK.ab1 HC Hordeum vulgare s... 46 0.002
gb|BQ463802.1|BQ463802 HG01H17r HG Hordeum vulgare subsp. v... 46 0.002
gb|BQ656750.1|BQ656750 HA02F05u HA Hordeum vulgare subsp. v... 46 0.002
gb|BQ659983.1|BQ659983 HG01H17u HG Hordeum vulgare subsp. v... 46 0.002
gb|BI776695.2|BI776695 EBpi07_SQ001_H11_R pistil, 12 DPA, n... 46 0.002
gb|BU972798.1|BU972798 HB22L24r BC Hordeum vulgare subsp. v... 46 0.002
gb|CA016131.1|CA016131 HV10E09u HV Hordeum vulgare subsp. v... 46 0.002
gb|CA018967.1|CA018967 HV10E09r HV Hordeum vulgare subsp. v... 46 0.002
gb|CA027624.1|CA027624 HZ59I04r HZ Hordeum vulgare subsp. v... 46 0.002
gb|BJ544355.1|BJ544355 BJ544355 K. Sato unpublished cDNA li... 46 0.002
gb|BJ544525.1|BJ544525 BJ544525 K. Sato unpublished cDNA li... 46 0.002
gb|BJ545493.1|BJ545493 BJ545493 K. Sato unpublished cDNA li... 46 0.002
gb|BJ545810.1|BJ545810 BJ545810 K. Sato unpublished cDNA li... 46 0.002
gb|BJ545985.1|BJ545985 BJ545985 K. Sato unpublished cDNA li... 46 0.002
gb|BJ546487.1|BJ546487 BJ546487 K. Sato unpublished cDNA li... 46 0.002
gb|BJ546503.1|BJ546503 BJ546503 K. Sato unpublished cDNA li... 46 0.002
gb|BJ548158.1|BJ548158 BJ548158 K. Sato unpublished cDNA li... 46 0.002
gb|BJ548794.1|BJ548794 BJ548794 K. Sato unpublished cDNA li... 46 0.002
gb|BJ549890.1|BJ549890 BJ549890 K. Sato unpublished cDNA li... 46 0.002
gb|CD663937.1|CD663937 UCRHV18_07af09_b1 Drought-stressed D... 46 0.002
dbj|AB055519.1| Hordeum vulgare mRNA for mitochondrial alde... 46 0.002
gb|BQ767957.1|BQ767957 EBro08_SQ010_E12_R root, 3 week, dro... 40 0.11
gb|BI949913.1|BI949913 HVSMEl0016O20f Hordeum vulgare spike... 38 0.43
>gb|BJ448569.1|BJ448569 BJ448569 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 5', mRNA sequence
Length = 670
Score = 480 bits (242), Expect = e-134
Identities = 499/584 (85%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 9 ggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgag 68
||||| ||||| ||||||||||||||||||||||||| || ||||| ||| | | |||
Sbjct: 47 ggcacgcgcatatacgtgcaggaagggatctacgacgcctttgtgaacaagtcagtggag 106
Query: 69 ctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccag 128
|| |||| || |||||||||||||| || |||||||||| || ||||| || |||
Sbjct: 107 cttgccaagaaatccgtggtcggagatcctttcaacccgaacgtacatcaaggtcctcag 166
Query: 129 gttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggc 188
||||||||| | || |||||||||||||||| |||||| ||| |||| ||| ||||||||
Sbjct: 167 gttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggc 226
Query: 189 gccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccc 248
||||| || |||||||||||||| ||||| ||||||| ||| |||||||||||||||
Sbjct: 227 gccaccctactcaccggagggaaggcctgcagcgacaa---gggttactacatcgagccc 283
Query: 249 accatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccg 308
|||||||||| ||||||||||| |||||| |||| || || || |||||||| ||||||
Sbjct: 284 gccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccg 343
Query: 309 gtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacc 368
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 344 gtgatggctctcatgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacc 403
Query: 369 cggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcg 428
||||| ||||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct: 404 cggtatggcctggccgccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcg 463
Query: 429 cggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcg 488
||||| || | |||| | | ||||| | |||||||||||||| ||||||||||||||
Sbjct: 464 cggtcggtcaggtccggggtcgtctgggttaactgctacttcgccttcgacccggacgcc 523
Query: 489 ccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgac 548
||||||||||| | |||||||||||| ||||||||||||||||||| ||| || ||||||
Sbjct: 524 ccgttcggcggctgcaagatgagcggcttcggcaaggacatgggcacggatgccctcgac 583
Query: 549 aagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 584 aagtacctgcacaccaagacggtggtcactccactctacaacac 627
>gb|BJ456291.1|BJ456291 BJ456291 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20g24 3', mRNA sequence
Length = 706
Score = 480 bits (242), Expect = e-134
Identities = 499/584 (85%), Gaps = 3/584 (0%)
Strand = Plus / Minus
Query: 9 ggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgag 68
||||| ||||| ||||||||||||||||||||||||| || ||||| ||| | | |||
Sbjct: 659 ggcacgcgcatatacgtgcaggaagggatctacgacgcctttgtgaacaagtcagtggag 600
Query: 69 ctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccag 128
|| |||| || |||||||||||||| || |||||||||| || ||||| || |||
Sbjct: 599 cttgccaagaaatccgtggtcggagatcctttcaacccgaacgtacatcaaggtcctcag 540
Query: 129 gttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggc 188
||||||||| | || |||||||||||||||| |||||| ||| |||| ||| ||||||||
Sbjct: 539 gttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggc 480
Query: 189 gccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccc 248
||||| || |||||||||||||| ||||| ||||||| ||| |||||||||||||||
Sbjct: 479 gccaccctactcaccggagggaaggcctgcagcgacaa---gggttactacatcgagccc 423
Query: 249 accatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccg 308
|||||||||| ||||||||||| |||||| |||| || || || |||||||| ||||||
Sbjct: 422 gccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccg 363
Query: 309 gtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacc 368
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 362 gtgatggctctcatgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacc 303
Query: 369 cggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcg 428
||||| ||||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct: 302 cggtatggcctggccgccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcg 243
Query: 429 cggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcg 488
||||| || | |||| | | ||||| | |||||||||||||| ||||||||||||||
Sbjct: 242 cggtcggtcaggtccggggtcgtctgggttaactgctacttcgccttcgacccggacgcc 183
Query: 489 ccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgac 548
||||||||||| | |||||||||||| ||||||||||||||||||| ||| || ||||||
Sbjct: 182 ccgttcggcggctgcaagatgagcggcttcggcaaggacatgggcacggatgccctcgac 123
Query: 549 aagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 122 aagtacctgcacaccaagacggtggtcactccactctacaacac 79
>gb|AV917894.1|AV917894 AV917894 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11p17 3', mRNA sequence
Length = 614
Score = 448 bits (226), Expect = e-124
Identities = 441/512 (86%), Gaps = 3/512 (0%)
Strand = Plus / Minus
Query: 81 tccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaaggac 140
|||||||||||||| || |||||||||| || |||||||| |||||||||||| |
Sbjct: 589 tccgtggtcggagatcctttcaacccgaacgtacatcaaggccctcaggttgacaagaat 530
Query: 141 cagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtc 200
|| |||||||||||||||| |||||| ||| |||| ||| ||||||||||||| || ||
Sbjct: 529 caatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggcgccaccctactc 470
Query: 201 accggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacg 260
|||||||||||| ||||| ||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 469 accggagggaaggcctgcagcgacaa---gggttactacatcgagcccgccatcttcacc 413
Query: 261 gacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctc 320
||||||||||| |||||| |||| || || || |||||||| ||||||||||||||||||
Sbjct: 412 gacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccggtgatggctctc 353
Query: 321 atgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctg 380
|||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| ||||||
Sbjct: 352 atgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacccggtatggcctg 293
Query: 381 gccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgc 440
||||||||| | |||||||||||||||||| | ||||| ||||||||||| || |
Sbjct: 292 gccgccggcgtggtgaccaagaacatcgacaccatgaacacagtgtcgcggtcggtcagg 233
Query: 441 gccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcggg 500
|||| | | ||||| | |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 232 tccggggtcgtctgggttaactgctacttcgccttcgacccggacgccccgttcggcggc 173
Query: 501 tacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcag 560
| |||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 172 tgcaagatgagcggcttcggcaaggacatgggcacggatgccctcgacaagtacctgcac 113
Query: 561 accaagaccgtggtcactccgctgtacaacac 592
|||||||| ||||||||||| || ||||||||
Sbjct: 112 accaagacggtggtcactccactctacaacac 81
>gb|AV929175.1|AV929175 AV929175 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11e16 3', mRNA sequence
Length = 636
Score = 440 bits (222), Expect = e-122
Identities = 413/476 (86%), Gaps = 3/476 (0%)
Strand = Plus / Minus
Query: 117 caaggcccccaggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcgga 176
|||||||| |||||||||||| | || |||||||||||||||| |||||| ||| ||||
Sbjct: 610 caaggccctcaggttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggt 551
Query: 177 aagcgcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctac 236
||| ||||||||||||| || |||||||||||||| ||||| ||||||| ||| |||
Sbjct: 550 aagagcgaaggcgccaccctactcaccggagggaaggcctgcagcgacaa---gggttac 494
Query: 237 tacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaa 296
|||||||||||| |||||||||| ||||||||||| |||||| |||| || || || |||
Sbjct: 493 tacatcgagcccgccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaa 434
Query: 297 atctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaa 356
||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 433 atcttcgggccggtgatggctctcatgaaattcaagacaatggaggaggtgattcagaag 374
Query: 357 gcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgcc 416
||||||| ||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct: 373 gcgaacagcacccggtatggcctggccgccggcgtggtgaccaagaacatcgacaccatg 314
Query: 417 aacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttc 476
||||| ||||||||||| || | |||| | | ||||| | |||||||||||||| |||
Sbjct: 313 aacacagtgtcgcggtcggtcaggtccggggtcgtctgggttaactgctacttcgccttc 254
Query: 477 gacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatg 536
||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||| |
Sbjct: 253 gacccggacgccccgttcggcggctgcaagatgagcggcttcggcaaggacatgggcacg 194
Query: 537 gacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
|| || ||||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 193 gatgccctcgacaagtacctgcacaccaagacggtggtcactccactctacaacac 138
>gb|CA000617.1|CA000617 HS07N10u HS Hordeum vulgare subsp. vulgare cDNA clone HS07N10
3-PRIME, mRNA sequence
Length = 574
Score = 432 bits (218), Expect = e-120
Identities = 412/476 (86%), Gaps = 3/476 (0%)
Strand = Plus / Minus
Query: 117 caaggcccccaggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcgga 176
||||| || |||||||||||| | || |||||||||||||||| |||||| ||| ||||
Sbjct: 550 caaggtcctcaggttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggt 491
Query: 177 aagcgcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctac 236
||| ||||||||||||| || |||||||||||||| ||||| ||||||| ||| |||
Sbjct: 490 aagagcgaaggcgccaccctactcaccggagggaaggcctgcagcgacaa---gggttac 434
Query: 237 tacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaa 296
|||||||||||| |||||||||| ||||||||||| |||||| |||| || || || |||
Sbjct: 433 tacatcgagcccgccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaa 374
Query: 297 atctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaa 356
||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 373 atcttcgggccggtgatggctctcatgaaattcaagacaatggaggaggtgattcagaag 314
Query: 357 gcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgcc 416
||||||| |||||| || ||||||||||||||| | |||||||||||||||||| |
Sbjct: 313 gcgaacagcacccgctatggcctggccgccggcgtggtgaccaagaacatcgacaccatg 254
Query: 417 aacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttc 476
||||||||||||||||| || | |||| | | ||||| | |||||||||||||| |||
Sbjct: 253 aacaccgtgtcgcggtcggtcaggtccggggtcgtctgggttaactgctacttcgccttc 194
Query: 477 gacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatg 536
||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||| |
Sbjct: 193 gacccggacgccccgttcggcggctgcaagatgagcggcttcggcaaggacatgggcacg 134
Query: 537 gacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
|| || ||||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 133 gatgccctcgacaagtacctgcacaccaagacggtggtcactccactctacaacac 78
>gb|BU981973.1|BU981973 HA25C12r HA Hordeum vulgare subsp. vulgare cDNA clone HA25C12
5-PRIME, mRNA sequence
Length = 572
Score = 410 bits (207), Expect = e-113
Identities = 388/448 (86%), Gaps = 3/448 (0%)
Strand = Plus / Plus
Query: 145 acgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccg 204
||||||||||||||| |||||| ||| |||| ||| ||||||||||||| || ||||||
Sbjct: 11 acgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggcgccaccctactcaccg 70
Query: 205 gagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacggacg 264
|||||||| ||||| ||||||| ||| |||||| |||||||| |||||||||| ||||
Sbjct: 71 gagggaaggcctgcagcgacaa---gggttactacntcgagcccgccatcttcaccgacg 127
Query: 265 tcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatga 324
||||||| |||||| |||| || || || |||||||| ||||||||||||||||||||||
Sbjct: 128 tcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccggtgatggctctcatga 187
Query: 325 aattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccg 384
|||||||||| ||||||||||||| ||||| ||||||| |||||| || ||||||||||
Sbjct: 188 aattcaagacaatggaggaggtgattcagaaggcgaacagcacccgctatggcctggccg 247
Query: 385 ccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccg 444
||||| | |||||||||||||||||| | ||||||||||||||||| || | |||
Sbjct: 248 ccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcgcggtcggtcaggtccg 307
Query: 445 gcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtaca 504
| | | ||||| | |||||||||||||| |||||||||||||| ||||||||||| | ||
Sbjct: 308 gggtcgtctgggttaactgctacttcgccttcgacccggacgccccgttcggcggctgca 367
Query: 505 agatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagacca 564
|||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||
Sbjct: 368 agatgagcggcttcggcaaggacatgggcacggatgccctcgacaagtacctgcacacca 427
Query: 565 agaccgtggtcactccgctgtacaacac 592
|||| ||||||||||| || ||||||||
Sbjct: 428 agacggtggtcactccactctacaacac 455
>gb|BU984313.1|BU984313 HF03J09r HF Hordeum vulgare subsp. vulgare cDNA clone HF03J09
5-PRIME, mRNA sequence
Length = 526
Score = 406 bits (205), Expect = e-112
Identities = 411/479 (85%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 81 tccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaaggac 140
|||||||||||||| || |||||||||| || ||||| || |||||||||||| |
Sbjct: 48 tccgtggtcggagatcctttcaacccgaacgtacatcaaggtcctcaggttgacaagaat 107
Query: 141 cagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtc 200
|| |||||||||||||||| |||||| ||| |||| ||| ||||||||||||| || ||
Sbjct: 108 caatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggcgccaccctactc 167
Query: 201 accggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacg 260
|||||||||||| ||||| ||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 168 accggagggaaggcctgcagcgacaa---gggttactacatcgagcccgccatcttcacc 224
Query: 261 gacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctc 320
||||||||||| |||||| |||| || || || |||||||| ||||||||||||||||||
Sbjct: 225 gacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccggtgatggctctc 284
Query: 321 atgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctg 380
|||||||||||||| ||||||||||||| ||||| ||||||| |||||| || ||||||
Sbjct: 285 atgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacccgctatggcctg 344
Query: 381 gccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgc 440
||||||||| | |||||||||||||||||| | ||||||||||||||||| || |
Sbjct: 345 gccgccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcgcggtcggtcagg 404
Query: 441 gccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcggg 500
|||| | | ||||| | |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 405 tccggggtcgtctgggttaactgctacttcgccttcgacccggacgccccgttcggcggc 464
Query: 501 tacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgca 559
| |||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 465 tgcaagatgagcggcttcggcaaggacatgggcacggatgccctcgacaagtacctgca 523
>gb|CA015545.1|CA015545 HT14K09r HT Hordeum vulgare subsp. vulgare cDNA clone HT14K09
5-PRIME, mRNA sequence
Length = 584
Score = 394 bits (199), Expect = e-108
Identities = 375/433 (86%), Gaps = 3/433 (0%)
Strand = Plus / Plus
Query: 160 ggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccggagggaagccctgcg 219
||||||| ||| |||| ||| ||||||||||||| || |||||||||||||| |||||
Sbjct: 10 ggtacatcgacgtcggtaagagcgaaggcgccaccctactcaccggagggaaggcctgca 69
Query: 220 gcgacaataagggctactacatcgagcccaccatcttcacggacgtcaaggacgacatga 279
||||||| ||| ||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct: 70 gcgacaa---gggttactacatcgagcccgccatcttcaccgacgtcaaggatgacatgt 126
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtgg 339
|||| || || || |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 127 cgattgcgcaagaggaaatcttcgggccggtgatggctctcatgaaattcaagacaatgg 186
Query: 340 aggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacca 399
|||||||||| ||||| ||||||| |||||| || ||||||||||||||| | |||||||
Sbjct: 187 aggaggtgattcagaaggcgaacagcacccgctatggcctggccgccggcgtggtgacca 246
Query: 400 agaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatca 459
||||||||||| | ||||||||||||||||| || | |||| | | ||||| | |
Sbjct: 247 agaacatcgacaccatgaacaccgtgtcgcggtcggtcaggtccggggtcgtctgggtta 306
Query: 460 actgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcg 519
||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| ||||
Sbjct: 307 actgctacttcgccttcgacccggacgccccgttcggcggctgcaagatgagcggcttcg 366
Query: 520 gcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcactc 579
||||||||||||||| ||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct: 367 gcaaggacatgggcacggatgccctcgacaagtacctgcacaccaagacggtggtcactc 426
Query: 580 cgctgtacaacac 592
| || ||||||||
Sbjct: 427 cactctacaacac 439
>gb|CA009784.1|CA009784 HT12M08u HT Hordeum vulgare subsp. vulgare cDNA clone HT12M08
3-PRIME, mRNA sequence
Length = 532
Score = 365 bits (184), Expect = 1e-099
Identities = 339/390 (86%), Gaps = 3/390 (0%)
Strand = Plus / Minus
Query: 203 cggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacgga 262
|||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||| ||
Sbjct: 532 cggagggaaggcctgcagcgacaa---gggttactacatcgagcccgccatcttcaccga 476
Query: 263 cgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcat 322
||||||||| |||||| |||| || || || |||||||| ||||||||||||||||||||
Sbjct: 475 cgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccggtgatggctctcat 416
Query: 323 gaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggc 382
|||||||||||| ||||||||||||| ||||| ||||||| |||||| || ||||||||
Sbjct: 415 gaaattcaagacaatggaggaggtgattcagaaggcgaacagcacccgctatggcctggc 356
Query: 383 cgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgc 442
||||||| | |||||||||||||||||| | ||||||||||||||||| || | |
Sbjct: 355 cgccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcgcggtcggtcaggtc 296
Query: 443 cggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggta 502
||| | | ||||| | |||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 295 cggggtcgtctgggttaactgctacttcgccttcgacccggacgccccgttcggcggctg 236
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagac 562
|||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| ||
Sbjct: 235 caagatgagcggcttcggcaaggacatgggcacggatgccctcgacaagtacctgcacac 176
Query: 563 caagaccgtggtcactccgctgtacaacac 592
|||||| ||||||||||| || ||||||||
Sbjct: 175 caagacggtggtcactccactttacaacac 146
>gb|CA021407.1|CA021407 HZ40A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40A05
5-PRIME, mRNA sequence
Length = 530
Score = 365 bits (184), Expect = 1e-099
Identities = 342/394 (86%), Gaps = 3/394 (0%)
Strand = Plus / Minus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||||||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||
Sbjct: 518 tcaccggagggaaggcctgcagcgacaa---gggttactacatcgagcccgccatcttca 462
Query: 259 cggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctc 318
| ||||||||||| |||||| |||| || || || |||||||| ||||||||||||||||
Sbjct: 461 ccgacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccggtgatggctc 402
Query: 319 tcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcc 378
|||||||||||||||| ||||||||||||| ||||| ||||||| |||||| || ||||
Sbjct: 401 tcatgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacccgctatggcc 342
Query: 379 tggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatcc 438
||||||||||| | |||||||||||||||||| | ||||||||||||||||| ||
Sbjct: 341 tggccgccggcgtggtgaccaagaacatcgacaccatgaacaccgtgtcgcggtcggtca 282
Query: 439 gcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcg 498
| |||| | | ||||| | ||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 281 ggtccggggtcgtctgggttaactgatacttcgccttcgacccggacgccccgttcggcg 222
Query: 499 ggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgc 558
| | |||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 221 gctgcaagatgagcggcttcggcaaggacatgggcacggatgccctcgacaagtacctgc 162
Query: 559 agaccaagaccgtggtcactccgctgtacaacac 592
| |||||||| ||||||||||| || ||||||||
Sbjct: 161 acaccaagacggtggtcactccactctacaacac 128
>gb|BQ464230.1|BQ464230 HF01L06T HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
5-PRIME, mRNA sequence
Length = 511
Score = 359 bits (181), Expect = 9e-098
Identities = 319/365 (87%)
Strand = Plus / Plus
Query: 228 aagggctactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgca 287
||||| ||||||||||||||| |||||||||| ||||||||||| |||||| |||| ||
Sbjct: 21 aagggttactacatcgagcccgccatcttcaccgacgtcaaggatgacatgtcgattgcg 80
Query: 288 caggatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtg 347
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 81 caagaggaaatcttcgggccggtgatggctctcatgaaattcaagacaatggaggaggtg 140
Query: 348 atccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatc 407
|| ||||| ||||||| |||||| || ||||||||||||||| | |||||||||||||||
Sbjct: 141 attcagaaggcgaacagcacccgctatggcctggccgccggcgtggtgaccaagaacatc 200
Query: 408 gacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctac 467
||| | ||||||||||||||||| || | |||| | | ||||| | |||||||||
Sbjct: 201 gacaccatgaacaccgtgtcgcggtcggtcaggtccggggtcgtctgggttaactgctac 260
Query: 468 ttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggac 527
||||| |||||||||||||| ||||||||||| | |||||||||||| ||||||||||||
Sbjct: 261 ttcgccttcgacccggacgccccgttcggcggctgcaagatgagcggcttcggcaaggac 320
Query: 528 atgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtac 587
||||||| ||| || ||||||||||||||||| |||||||| ||||||||||| || |||
Sbjct: 321 atgggcacggatgccctcgacaagtacctgcacaccaagacggtggtcactccactctac 380
Query: 588 aacac 592
|||||
Sbjct: 381 aacac 385
>gb|AV913129.1|AV913129 AV913129 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11p17 5', mRNA sequence
Length = 552
Score = 341 bits (172), Expect = 2e-092
Identities = 345/402 (85%), Gaps = 3/402 (0%)
Strand = Plus / Plus
Query: 9 ggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgag 68
||||| ||||| ||||||||||||||||||||||||| || ||||| ||| | | |||
Sbjct: 87 ggcacgcgcatatacgtgcaggaagggatctacgacgcctttgtgaacaagtcagtggag 146
Query: 69 ctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccag 128
|| |||| || |||||||||||||| || |||||||||| || |||||||| |||
Sbjct: 147 cttgccaagaaatccgtggtcggagatcctttcaacccgaacgtacatcaaggccctcag 206
Query: 129 gttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggc 188
||||||||| | || |||||||||||||||| |||||| ||| |||| ||| ||||||||
Sbjct: 207 gttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggc 266
Query: 189 gccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccc 248
||||| || |||||||||||||| ||||| ||||||| ||| |||||||||||||||
Sbjct: 267 gccaccctactcaccggagggaaggcctgcagcgacaa---gggttactacatcgagccc 323
Query: 249 accatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccg 308
|||||||||| ||||||||||| |||||| |||| || || || |||||||| ||||||
Sbjct: 324 gccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgggccg 383
Query: 309 gtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacc 368
|||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||
Sbjct: 384 gtgatggctctcatgaaattcaagacaatggaggaggtgattcagaaggcgaacagcacc 443
Query: 369 cggtacggcctggccgccggcatcgtgaccaagaacatcgac 410
||||| ||||||||||||||| | ||||||||||||||||||
Sbjct: 444 cggtatggcctggccgccggcgtggtgaccaagaacatcgac 485
>gb|BQ761582.1|BQ761582 EBem10_SQ001_N02_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ001_N02 5', mRNA sequence
Length = 347
Score = 335 bits (169), Expect = 1e-090
Identities = 298/341 (87%)
Strand = Plus / Minus
Query: 228 aagggctactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgca 287
||||| ||||||||||||||| |||||||||| ||||||||||| |||||| |||| ||
Sbjct: 341 aagggttactacatcgagcccgccatcttcaccgacgtcaaggatgacatgtcgattgcg 282
Query: 288 caggatgaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtg 347
|| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 281 caagaggaaatcttcgggccggtgatggctctcatgaaattcaagacaatggaggaggtg 222
Query: 348 atccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatc 407
|| ||||| ||||||| |||||| || ||||||||||||||| | |||||||||||||||
Sbjct: 221 attcagaaggcgaacagcacccgctatggcctggccgccggcgtggtgaccaagaacatc 162
Query: 408 gacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctac 467
||| | ||||||||||||||||| || | |||| | | ||||| | |||||||||
Sbjct: 161 gacaccatgaacaccgtgtcgcggtcggtcaggtccggggtcgtctgggttaactgctac 102
Query: 468 ttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggac 527
||||| |||||||||||||| ||||||||||| | |||||||||||| ||||||||||||
Sbjct: 101 ttcgccttcgacccggacgccccgttcggcggctgcaagatgagcggcttcggcaaggac 42
Query: 528 atgggcatggacgcgctcgacaagtacctgcagaccaagac 568
||||||| ||| || ||||||||||||||||| ||||||||
Sbjct: 41 atgggcacggatgccctcgacaagtacctgcacaccaagac 1
>gb|BQ659782.1|BQ659782 HF01L06w HF Hordeum vulgare subsp. vulgare cDNA clone HF01L06
3-PRIME, mRNA sequence
Length = 475
Score = 333 bits (168), Expect = 5e-090
Identities = 303/348 (87%)
Strand = Plus / Minus
Query: 245 gcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgg 304
|||| |||||||||| ||||||||||| |||||| |||| || || || |||||||| ||
Sbjct: 475 gcccgccatcttcaccgacgtcaaggatgacatgtcgattgcgcaagaggaaatcttcgg 416
Query: 305 gccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaa 364
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 415 gccggtgatggctctcatgaaattcaagacaatggaggaggtgattcagaaggcgaacag 356
Query: 365 cacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgt 424
|||||| || ||||||||||||||| | |||||||||||||||||| | ||||||||
Sbjct: 355 cacccgctatggcctggccgccggcgtggtgaccaagaacatcgacaccatgaacaccgt 296
Query: 425 gtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccgga 484
||||||||| || | |||| | | ||||| | |||||||||||||| |||||||||||
Sbjct: 295 gtcgcggtcggtcaggtccggggtcgtctgggttaactgctacttcgccttcgacccgga 236
Query: 485 cgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgct 544
||| ||||||||||| | |||||||||||| ||||||||||||||||||| ||| || ||
Sbjct: 235 cgccccgttcggcggctgcaagatgagcggcttcggcaaggacatgggcacggatgccct 176
Query: 545 cgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 175 cgacaagtacctgcacaccaagacggtggtcactccactctacaacac 128
>gb|BQ466268.1|BQ466268 HT02B02r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B02
5-PRIME, mRNA sequence
Length = 438
Score = 299 bits (151), Expect = 7e-080
Identities = 262/299 (87%)
Strand = Plus / Minus
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 418 gaaatcttcgggccggtgatggctctcatgaaattcaagacaatggaggaggtgattcag 359
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|| ||||||| |||||| || ||||||||||||||| | |||||||||||||||||| |
Sbjct: 358 aaggcgaacagcacccgctatggcctggccgccggcgtggtgaccaagaacatcgacacc 299
Query: 414 gccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcg 473
||||||||||||||||| || | |||| | | ||||| | ||||||||||||||
Sbjct: 298 atgaacaccgtgtcgcggtcggtcaggtccggggtcgtctgggttaactgctacttcgcc 239
Query: 474 ttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggc 533
|||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct: 238 ttcgacccggacgccccgttcggcggctgcaagatgagcggcttcggcaaggacatgggc 179
Query: 534 atggacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
| ||| || ||||||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 178 acggatgccctcgacaagtacctgcacaccaagacggtggtcactccactctacaacac 120
>gb|CA014933.1|CA014933 HT12M08r HT Hordeum vulgare subsp. vulgare cDNA clone HT12M08
5-PRIME, mRNA sequence
Length = 654
Score = 113 bits (57), Expect = 9e-024
Identities = 153/185 (82%)
Strand = Plus / Plus
Query: 9 ggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgag 68
||||| ||||| ||||||||||||||||||||||||| || ||||| ||| | | |||
Sbjct: 463 ggcacgcgcatatacgtgcaggaagggatctacgacgcctttgtgaacaagtcagtggag 522
Query: 69 ctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccag 128
|| |||| || |||||||||||||| || |||||||||| || ||||| || |||
Sbjct: 523 cttgccaagaaatccgtggtcggagatcctttcaacccgaacgtacatcaaggtcctcag 582
Query: 129 gttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggc 188
||||||||| | || |||||||||||||||| |||||| ||| |||| ||| ||||||||
Sbjct: 583 gttgacaagaatcaatacgagaaggtcctcaagtacatcgacgtcggtaagagcgaaggc 642
Query: 189 gccac 193
|||||
Sbjct: 643 gccac 647
>gb|AL501734.1|AL501734 AL501734 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05C24u 3', mRNA sequence
Length = 556
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||
Sbjct: 382 aactgctacttcgccttcgaccccgaggcgcccttcggcgggtacaagatgagcggcttc 323
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcac 577
||| |||| ||||||| || ||||||||||| ||||| ||||| |||| ||||
Sbjct: 322 ggccgggaccagggcatgatggccatcgacaagtacatgcaggtcaagagcgtgatcac 264
>gb|BM371235.1|BM371235 EBro04_SQ003_O18_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_O18 5', mRNA sequence
Length = 423
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||
Sbjct: 129 aactgctacttcgccttcgaccccgaggcgcccttcggcgggtacaagatgagcggcttc 188
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcac 577
||| |||| ||||||| || ||||||||||| ||||| ||||| |||| ||||
Sbjct: 189 ggccgggaccagggcatgatggccatcgacaagtacatgcaggtcaagagcgtgatcac 247
Score = 85.7 bits (43), Expect = 2e-015
Identities = 124/151 (82%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||||||||| ||| | ||||||||| | ||| ||||||||| ||||| |
Sbjct: 41 gtacgggctggccgccgggatcatcaccaagaacttggacatcgccaacaaggtgtcaag 100
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | ||||| || | | ||| | |||||||||||||| |||||||| || |||||
Sbjct: 101 gtcggttcgcgcggggacagtgtgggtgaactgctacttcgccttcgaccccgaggcgcc 160
Query: 491 gttcggcgggtacaagatgagcgggttcggc 521
||||||||||||||||||||||| ||||||
Sbjct: 161 cttcggcgggtacaagatgagcggcttcggc 191
>gb|CB877540.1|CB877540 HP05E21T HP Hordeum vulgare subsp. vulgare cDNA clone HP05E21
5-PRIME, mRNA sequence
Length = 373
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||
Sbjct: 115 aactgctacttcgccttcgaccccgaggcgcccttcggcgggtacaagatgagcggcttc 174
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcac 577
||| |||| ||||||| || ||||||||||| ||||| ||||| |||| ||||
Sbjct: 175 ggccgggaccagggcatgatggccatcgacaagtacatgcaggtcaagagcgtgatcac 233
>gb|CV060332.1|CV060332 BNEL57a10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL57a10 5' similar to cytosolic
aldehyde dehydrogenase RF2C, mRNA sequence
Length = 551
Score = 73.8 bits (37), Expect = 8e-012
Identities = 154/193 (79%)
Strand = Plus / Plus
Query: 360 aacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaac 419
|||||||| ||||||| ||||| || || | |||||||||||||||||||| ||||||
Sbjct: 31 aacaacacgaggtacgggctggcggcgggggtggtgaccaagaacatcgacgtggccaac 90
Query: 420 accgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgac 479
| || ||||||| ||||| ||||| | | ||| | |||||||||||||| | |||
Sbjct: 91 aggatgacgcggtcgatccgtgccggggtggtgtgggtgaactgctacttcgccatggac 150
Query: 480 ccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggac 539
||| |||||||| ||| ||||||||| ||||||||||||||| |||||| ||
Sbjct: 151 agcgactgcccgttcggggggcgcaagatgagtgggttcggcaaggacgacggcatgcac 210
Query: 540 gcgctcgacaagt 552
|||||||||||||
Sbjct: 211 gcgctcgacaagt 223
>gb|BF253896.2|BF253896 HVSMEf0002G19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002G19f, mRNA sequence
Length = 844
Score = 71.9 bits (36), Expect = 3e-011
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || | ||||||||||| ||||||| |||||| || ||
Sbjct: 471 tactacattgagcctaccatatttgcagacgtcaaggaggacatgaagatcgctcaagac 530
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
|| ||||| || || |||||| | |||||||| |||||||| || || |||| ||| ||
Sbjct: 531 gagatcttcggccccgtgatgtccctcatgaagttcaagacggtcgatgaggcgatagag 590
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|| || ||| |||| |||||| ||||||| ||| ||| | ||||||||| | ||| ||
Sbjct: 591 aaggccaactgcaccaagtacgggctggccgncgggatcatcaccaagaacttggacatc 650
Query: 414 gccaaca 420
|||||||
Sbjct: 651 gccaaca 657
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 27 caggaagggatctacgacgagttcgtgaagaaggc 61
||||||||||| |||||||||||||||||||||||
Sbjct: 267 caggaagggatatacgacgagttcgtgaagaaggc 301
Score = 54.0 bits (27), Expect = 7e-006
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| ||||||| || ||||| |||||||||||||||| |||||| |||
Sbjct: 696 aactgctacttcgccctcgaccccgaggcgcc-ttcggcgggtacaaga-gagcggcttc 753
Query: 519 ggc 521
|||
Sbjct: 754 ggc 756
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 123 ccccaggttgacaaggaccagtacgagaaggtcctcaggtacattga 169
|||||||| |||||||| || | |||| |||||| |||||||||||
Sbjct: 363 ccccaggtcgacaaggagcaatttgagagggtcctaaggtacattga 409
>gb|BF260313.2|BF260313 HVSMEf0021K17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0021K17f, mRNA sequence
Length = 542
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 27 caggaagggatctacgacgagttcgtgaagaaggc 61
||||||||||| |||||||||||||||||||||||
Sbjct: 186 caggaagggatatacgacgagttcgtgaagaaggc 220
Score = 58.0 bits (29), Expect = 5e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || | ||||||||||| ||||||| |||||| || ||
Sbjct: 390 tactacattgagcctaccatatttgcagacgtcaaggaggacatgaagatcgctcaagac 449
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagac 334
|| ||||| || || |||||| | |||||||| ||||||||
Sbjct: 450 gagatcttcggccccgtgatgtccctcatgaagttcaagac 490
>gb|BF260792.2|BF260792 HVSMEf0022P08f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P08f, mRNA sequence
Length = 727
Score = 61.9 bits (31), Expect = 3e-008
Identities = 148/187 (79%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || | ||||||||||| ||||||| |||||| || ||
Sbjct: 390 tactacattgagcctaccatatttgcagacgtcaaggaggacatgaagatcgctcaagac 449
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
|| ||||| || || |||||| | |||||||| |||||||| || || |||| ||| |
Sbjct: 450 gagatcttcggccccgtgatgtccctcatgaagttcaagacggtcgatgaggcgatagac 509
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|| || ||| |||| |||||| ||||||| ||| ||| | ||||||||| | ||| ||
Sbjct: 510 aacgccaactgcaccaagtacgggctggccggcgggatcatcaccaagaacttggacatc 569
Query: 414 gccaaca 420
|||||||
Sbjct: 570 gccaaca 576
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 123 ccccaggttgacaaggaccagtacgagaaggtcctcaggtacattga 169
|||||||| |||||||| || | ||||| |||||| |||||||||||
Sbjct: 282 ccccaggtcgacaaggagcaattcgagagggtcctaaggtacattga 328
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 27 caggaagggatctacgacgagttcgtgaagaaggc 61
||||||||||| ||| ||||||||||||| |||||
Sbjct: 186 caggaagggatataccacgagttcgtgaacaaggc 220
Score = 38.2 bits (19), Expect = 0.43
Identities = 53/63 (84%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
||||||||||| || ||| |||| || ||||| | ||| |||||||||| || |||||||
Sbjct: 615 aactgctacttggccttcaacccagaggcgccctgcgg-gggtacaagaagaccgggttc 673
Query: 519 ggc 521
|||
Sbjct: 674 ggc 676
>gb|CA027259.1|CA027259 HZ58F19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58F19
5-PRIME, mRNA sequence
Length = 361
Score = 58.0 bits (29), Expect = 5e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 ggcacacgcatctacgtgcaggaagggatctacgacg 45
||||| ||||| |||||||||||||||||||||||||
Sbjct: 320 ggcacgcgcatatacgtgcaggaagggatctacgacg 356
>gb|BI948988.1|BI948988 HVSMEl0011N01f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0011N01f, mRNA sequence
Length = 525
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Plus
Query: 235 actacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatg 294
|||||||||||||||| | ||||| || |||||||| ||||||| || || ||| |
Sbjct: 1 actacatcgagcccacagttttcaccgatgtcaaggatgacatgatcatagcgggggagg 60
Query: 295 aaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccaga 354
| ||||| ||||| || ||| || ||||| |||| || |||||||||| |||| ||
Sbjct: 61 agatcttcgggcccgtcatgtgcctgatgaagttcaccacggtggaggaggcgatcgcga 120
Query: 355 aagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcg 414
|| |||||||| ||||||| ||||| || || | |||||||||||||||||||| |
Sbjct: 121 gggccaacaacacgaggtacgggctggcggcgggggtggtgaccaagaacatcgacgtgg 180
Query: 415 ccaacaccgtgtcgcggtccatccgcgccgg 445
|||||| || ||||||| ||||| |||||
Sbjct: 181 ccaacaggatgacgcggtcgatccgtgccgg 211
>gb|CA012977.1|CA012977 HT07A06r HT Hordeum vulgare subsp. vulgare cDNA clone HT07A06
5-PRIME, mRNA sequence
Length = 630
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 27 caggaagggatctacgacgagttcgtgaag 56
||||||||||| ||||||||||||||||||
Sbjct: 601 caggaagggatatacgacgagttcgtgaag 630
>gb|BG300455.1|BG300455 HVSMEb0017B23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B23f, mRNA sequence
Length = 853
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 213 ttcggcgggtacaagatgagcgg 235
>gb|AW983019.2|AW983019 HVSMEg0004N09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004N09f, mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 280 ttcggcgggtacaagatgagcgg 302
>gb|BE194107.2|BE194107 HVSMEh0084A24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0084A24f, mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 194 ttcggcgggtacaagatgagcgg 216
>gb|BF267540.2|BF267540 HV_CEa0018D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018D16f, mRNA sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 447 ttcggcgggtacaagatgagcgg 469
>gb|BF267588.2|BF267588 HV_CEa0018F16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F16f, mRNA sequence
Length = 808
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 447 ttcggcgggtacaagatgagcgg 469
>gb|AV921807.1|AV921807 AV921807 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12o18 3', mRNA sequence
Length = 657
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 353 ttcggcgggtacaagatgagcgg 331
>gb|AV931272.1|AV931272 AV931272 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19d07 3', mRNA sequence
Length = 556
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 321 ttcggcgggtacaagatgagcgg 299
>gb|BM815988.1|BM815988 HC108H09_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC108H09_SK.ab1 similar to aldehyde dehydrogenase [Oryza
sativa], T-cytoplasm male sterility restorer factor 2
[Zea mays],aldehyde dehydrogenase (NAD) (EC 1.2.1.3) 2A
precursor, mitochondrial [Nicotiana tabacum],aldehyde
dehydrogenase ALDH2b [Oryza sativa], mRNA sequence
Length = 896
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 396 ttcggcgggtacaagatgagcgg 418
>gb|BQ463802.1|BQ463802 HG01H17r HG Hordeum vulgare subsp. vulgare cDNA clone HG01H17
5-PRIME, mRNA sequence
Length = 462
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 386 ttcggcgggtacaagatgagcgg 364
>gb|BQ656750.1|BQ656750 HA02F05u HA Hordeum vulgare subsp. vulgare cDNA clone HA02F05
3-PRIME, mRNA sequence
Length = 549
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 360 ttcggcgggtacaagatgagcgg 338
>gb|BQ659983.1|BQ659983 HG01H17u HG Hordeum vulgare subsp. vulgare cDNA clone HG01H17
3-PRIME, mRNA sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 76 ttcggcgggtacaagatgagcgg 98
>gb|BI776695.2|BI776695 EBpi07_SQ001_H11_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_H11 5', mRNA sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 338 ttcggcgggtacaagatgagcgg 360
>gb|BU972798.1|BU972798 HB22L24r BC Hordeum vulgare subsp. vulgare cDNA clone HB22L24
5-PRIME, mRNA sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 382 ttcggcgggtacaagatgagcgg 404
>gb|CA016131.1|CA016131 HV10E09u HV Hordeum vulgare subsp. vulgare cDNA clone HV10E09
3-PRIME, mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 451 ttcggcgggtacaagatgagcgg 429
>gb|CA018967.1|CA018967 HV10E09r HV Hordeum vulgare subsp. vulgare cDNA clone HV10E09
5-PRIME, mRNA sequence
Length = 298
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 208 ttcggcgggtacaagatgagcgg 230
>gb|CA027624.1|CA027624 HZ59I04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59I04
5-PRIME, mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 185 ttcggcgggtacaagatgagcgg 163
>gb|BJ544355.1|BJ544355 BJ544355 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26h06 5', mRNA sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 520 ttcggcgggtacaagatgagcgg 542
>gb|BJ544525.1|BJ544525 BJ544525 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30h11 5', mRNA sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 532 ttcggcgggtacaagatgagcgg 554
>gb|BJ545493.1|BJ545493 BJ545493 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17a20 3', mRNA sequence
Length = 586
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 368 ttcggcgggtacaagatgagcgg 346
>gb|BJ545810.1|BJ545810 BJ545810 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak26h06 3', mRNA sequence
Length = 672
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 368 ttcggcgggtacaagatgagcgg 346
>gb|BJ545985.1|BJ545985 BJ545985 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30h11 3', mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 340 ttcggcgggtacaagatgagcgg 318
>gb|BJ546487.1|BJ546487 BJ546487 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42a08 3', mRNA sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 370 ttcggcgggtacaagatgagcgg 348
>gb|BJ546503.1|BJ546503 BJ546503 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42e14 3', mRNA sequence
Length = 530
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 344 ttcggcgggtacaagatgagcgg 322
>gb|BJ548158.1|BJ548158 BJ548158 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13d19 3', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 492 ttcggcgggtacaagatgagcgg 514
|||||||||||||||||||||||
Sbjct: 343 ttcggcgggtacaagatgagcgg 321
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,616
Number of Sequences: 312970
Number of extensions: 119616
Number of successful extensions: 34412
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34267
Number of HSP's gapped (non-prelim): 94
length of query: 800
length of database: 175,134,539
effective HSP length: 19
effective length of query: 781
effective length of database: 169,188,109
effective search space: 132135913129
effective search space used: 132135913129
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)