BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2192420.2.1
         (738 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BJ466853.1|BJ466853  BJ466853 K. Sato unpublished cDNA li...   371   e-101
gb|AY970702.1|  Hordeum vulgare subsp. vulgare cultivar Opti...    38   0.40 
gb|AY970704.1|  Hordeum vulgare subsp. vulgare cultivar Triu...    38   0.40 
gb|AY943294.1|  Hordeum vulgare subsp. vulgare clone BAC 673...    38   0.40 

>gb|BJ466853.1|BJ466853 BJ466853 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags34i14 3', mRNA sequence
          Length = 687

 Score =  371 bits (187), Expect = e-101
 Identities = 373/435 (85%)
 Strand = Plus / Minus

                                                                       
Query: 9   aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
           ||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| ||
Sbjct: 635 aaaaattgttatggttctggcagctaccaacttcccatgggatattgatgaagcactcag 576

                                                                       
Query: 69  gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
           ||| |||||||| |||||||| |||||||||||||||  ||||||||| |||||| ||||
Sbjct: 575 gcggaggctggaaaagcgtatctatattccacttccaagttttgaaagcagaaagtcact 516

                                                                       
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
            |||| ||| ||||||||||| ||| || ||||  | ||||||||||||||||| |||||
Sbjct: 515 catcagcataaatcttagaacggttgaggtagctactgatgttaacatcgacgaagttgc 456

                                                                       
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
            || ||||||||||| |||||||| ||||| |||||||| |||||||| ||||| || ||
Sbjct: 455 acgaaggacagaagggtatagtggggatgacctgacaaatgtttgccgtgatgcttcgat 396

                                                                       
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
           |||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 395 gaatggtatgaggcgaaagatcgcaggcaagacccgtgacgagatcaagaacatgtcaaa 336

                                                                       
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
           ||| || ||  | ||||||||||||||||||||||||||||  || ||| |||| |||||
Sbjct: 335 ggatgacatctcaaaggacccggtggccatgtgcgactttgaagaagctttggtcaaggt 276

                                                                       
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
            ||||||||||| || || || ||||| ||    || |||||||||||||| ||||| ||
Sbjct: 275 ccagaagagtgtgtcaccctctgacatcgaacgccacgagaagtggatggccgagttcgg 216

                          
Query: 429 gtctgcctgagacct 443
            ||||| ||| ||||
Sbjct: 215 atctgcttgaaacct 201



>gb|AY970702.1| Hordeum vulgare subsp. vulgare cultivar Optic pseudo-response
           regulator PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3539

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 564 tatcttgtctgtttccagtgatg 586
           ||||||||| |||||||||||||
Sbjct: 928 tatcttgtccgtttccagtgatg 950



>gb|AY970704.1| Hordeum vulgare subsp. vulgare cultivar Triumph pseudo-response
           regulator PPD-H1 (Ppd-H1) gene, complete cds
          Length = 3539

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 564 tatcttgtctgtttccagtgatg 586
           ||||||||| |||||||||||||
Sbjct: 928 tatcttgtccgtttccagtgatg 950



>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 564   tatcttgtctgtttccagtgatg 586
             ||||||||| |||||||||||||
Sbjct: 11732 tatcttgtccgtttccagtgatg 11754



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,504
Number of Sequences: 312970
Number of extensions: 62504
Number of successful extensions: 17657
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17644
Number of HSP's gapped (non-prelim): 12
length of query: 738
length of database: 175,134,539
effective HSP length: 19
effective length of query: 719
effective length of database: 169,188,109
effective search space: 121646250371
effective search space used: 121646250371
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)