BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.2
(798 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA li... 119 1e-025
gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA li... 119 1e-025
gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA li... 119 1e-025
gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA li... 119 1e-025
gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA li... 119 1e-025
gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA li... 119 1e-025
gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. v... 117 6e-025
gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare s... 113 9e-024
gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, n... 94 8e-018
gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. v... 92 3e-017
gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedl... 88 5e-016
gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike... 88 5e-016
gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA li... 88 5e-016
gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA li... 88 5e-016
gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. v... 88 5e-016
gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, n... 84 8e-015
gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hyd... 78 5e-013
gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subs... 78 5e-013
gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedl... 76 2e-012
gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiol... 72 3e-011
gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiol... 66 2e-009
gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. v... 66 2e-009
gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiol... 64 8e-009
gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA li... 64 8e-009
gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA li... 60 1e-007
gb|BI951143.1|BI951143 HVSMEl0024K06f Hordeum vulgare spike... 54 7e-006
gb|BF622269.2|BF622269 HVSMEa0002G17f Hordeum vulgare seedl... 38 0.43
>gb|AV917599.1|AV917599 AV917599 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 3', mRNA sequence
Length = 656
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 526 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 467
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 466 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 407
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 406 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 347
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 346 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 287
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 286 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 227
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 226 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 183
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 653 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 594
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 593 aactcctagttactggatgcaga 571
>gb|AV927973.1|AV927973 AV927973 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 3', mRNA sequence
Length = 642
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 512 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 453
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 452 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 393
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 392 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 333
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 332 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 273
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 272 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 213
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 212 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 169
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 639 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 580
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 579 aactcctagttactggatgcaga 557
>gb|AV930332.1|AV930332 AV930332 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 3', mRNA sequence
Length = 646
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 516 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 457
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 456 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 397
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 396 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 337
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 336 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 277
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 276 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 217
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 216 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 173
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 643 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 584
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 583 aactcctagttactggatgcaga 561
>gb|AV930658.1|AV930658 AV930658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24j13 3', mRNA sequence
Length = 561
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 507 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 448
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 447 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 388
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 387 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 328
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 327 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 268
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 267 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 208
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 207 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 164
>gb|AV934949.1|AV934949 AV934949 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 3', mRNA sequence
Length = 654
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 525 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 466
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 465 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 406
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 405 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 346
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 345 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 286
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 285 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 226
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 225 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 182
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 652 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 593
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 592 aactcctagttactggatgcaga 570
>gb|BJ447915.1|BJ447915 BJ447915 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 5', mRNA sequence
Length = 712
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Plus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 289 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 348
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 349 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 408
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 409 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 468
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 469 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 528
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 529 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 588
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 589 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 632
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 162 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 221
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 222 aactcctagttactggatgcaga 244
>gb|BJ455660.1|BJ455660 BJ455660 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17l17 3', mRNA sequence
Length = 704
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 507 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 448
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 447 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 388
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 387 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 328
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 327 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 268
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 267 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 208
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 207 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 164
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 634 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 575
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 574 aactcctagttactggatgcaga 552
>gb|BJ466672.1|BJ466672 BJ466672 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 3', mRNA sequence
Length = 715
Score = 119 bits (60), Expect = 1e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 533 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 474
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 473 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 414
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 413 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 354
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 353 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 294
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttcacc 441
|| ||| || ||||||||||| ||||||||||||||||| ||| | ||||||||| ||
Sbjct: 293 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttctcc 234
Query: 442 gccttcgatctggcgctggctgagcccaagcttgtggcggagat 485
| ||||| || ||||| ||| || || ||||||| || |||||
Sbjct: 233 tcgttcgaccttgcgcttgctcagtccgagcttgtcgcagagat 190
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 660 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 601
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 600 aactcctagttactggatgcaga 578
>gb|BU971681.1|BU971681 HB19F12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19F12
5-PRIME, mRNA sequence
Length = 556
Score = 117 bits (59), Expect = 6e-025
Identities = 248/311 (79%)
Strand = Plus / Plus
Query: 175 tctgcgatcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaacttc 234
||||| ||||| ||||||||| | | ||||| |||||||||||| ||| | |||||||||
Sbjct: 56 tctgctatcacctggcaggattccgggaataacttcctgagagtaaagattgtgaacttc 115
Query: 235 gggtcggacaccgttaacctcacggtctccacgagcggactcggggccagcgtcaacgcg 294
|||||||||||||| | |||||| |||| | ||| ||| ||| ||| ||||||||
Sbjct: 116 gggtcggacaccgtgagcctcacaatctctgtgtccgggctccaggctagcatcaacgcg 175
Query: 295 ctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaactccttcagt 354
||||| |||| ||| || || |||||||| |||| || | ||| || || || ||||||
Sbjct: 176 ctggggtcaaacgctactgttctcacgtccagcaatgtaaaggatgaaaattctttcagt 235
Query: 355 aacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgcag 414
||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |||||||||
Sbjct: 236 aacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaacagatgcag 295
Query: 415 gtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagcccaagctt 474
|||||||| ||| | ||||||||| || | ||||| || ||||| ||| || || |||||
Sbjct: 296 gtcacgctcgctgcccactccttctcctcgttcgaccttgcgcttgctcagtccgagctt 355
Query: 475 gtggcggagat 485
|| || |||||
Sbjct: 356 gtcgcagagat 366
>gb|BM817330.1|BM817330 HC111G07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111G07_T3.ab1 similar to (AC011708) putative
alpha-L-arabinofuranosidase [Arabidopsis thaliana], mRNA
sequence
Length = 924
Score = 113 bits (57), Expect = 9e-024
Identities = 237/297 (79%)
Strand = Plus / Plus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 435 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 494
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcacggtc 261
|||| |||||||||||| ||| | ||||||||||||||||||||||| | |||||| ||
Sbjct: 495 aataacttcctgagagtaaagattgtgaacttcgggtcggacaccgtgagcctcacaatc 554
Query: 262 tccacgagcggactcggggccagcgtcaacgcgctgggatcaaccgccaccgtcctcacg 321
|| | ||| ||| ||| ||| ||||||||||||| |||| ||| || || ||||||
Sbjct: 555 tctgtgtccgggctccaggctagcatcaacgcgctggggtcaaacgctactgttctcacg 614
Query: 322 tctggcaacgtcatggacgagaactccttcagtaacccgaacaaggttgcgccggtgaaa 381
|| |||| || | ||| || || || ||||||||||| | |||||| | ||| |||| |
Sbjct: 615 tccagcaatgtaaaggatgaaaattctttcagtaacccaaccaaggtcgtgcccgtgaca 674
Query: 382 agccagctgagcaacgccgcggagcagatgcaggtcacgctggctcctcactccttc 438
|| ||| || ||||||||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 675 agtcagttgcataacgccgcggaacagatgcaggtcacgctcgctgcccactccttc 731
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 308 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 367
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 368 aactcctagttactggatgcaga 390
>gb|BM368797.2|BM368797 EBem08_SQ004_K02_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_K02 5', mRNA sequence
Length = 479
Score = 93.7 bits (47), Expect = 8e-018
Identities = 173/215 (80%)
Strand = Plus / Plus
Query: 165 gctggccgcgtctgcgatcacgtggcaggatgcagagaatagcttcctgagagtgaaggt 224
|||||| || ||||||||||||||||| |||| ||||| |||||||||||||||||| |
Sbjct: 239 gctggcagcatctgcgatcacgtggcatgatgacgagaacagcttcctgagagtgaagat 298
Query: 225 cgtgaacttcgggtcggacaccgttaacctcacggtctccacgagcggactcggggccag 284
||||| |||||| | || |||| |||||| |||| ||| || ||| || |||
Sbjct: 299 tgtgaatttcgggccagatgccgtgggcctcaccatctcggcgactgggctccagggcag 358
Query: 285 cgtcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaa 344
| |||| ||||| ||||| ||||| ||||| ||||| |||||| || |||||||||||
Sbjct: 359 catcaatgcgctcggatccaccgcgaccgttctcacatctggcggtgtaatggacgagaa 418
Query: 345 ctccttcagtaacccgaacaaggttgcgccggtga 379
||| ||| |||||| |||||||||| ||||||||
Sbjct: 419 ctctttcgctaacccaaacaaggttgtgccggtga 453
Score = 85.7 bits (43), Expect = 2e-015
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 28 acgtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctac 87
||||||||||| |||||||| ||||||||||||||||| || || || ||||| || |||
Sbjct: 102 acgtggaacccagacgctatcgtcttcaactcctggcagcaatacggaactcccagttac 161
Query: 88 tggatgcagacnnttttccg 107
||||||||||| |||||||
Sbjct: 162 tggatgcagacgcttttccg 181
>gb|BU981962.1|BU981962 HA25B23r HA Hordeum vulgare subsp. vulgare cDNA clone HA25B23
5-PRIME, mRNA sequence
Length = 558
Score = 91.7 bits (46), Expect = 3e-017
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 49 gtcttcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccg 107
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 22 gtcttcaactcctggcaacagtatggaactcctagctactggatgcagacatttttccg 80
>gb|CA024671.1|CA024671 HZ49P14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49P14
5-PRIME, mRNA sequence
Length = 597
Score = 91.7 bits (46), Expect = 3e-017
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 49 gtcttcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccg 107
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 460 gtcttcaactcctggcaacagtatggaactcctagctactggatgcagacatttttccg 518
>gb|CA028489.1|CA028489 HZ62C12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62C12
5-PRIME, mRNA sequence
Length = 557
Score = 91.7 bits (46), Expect = 3e-017
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 49 gtcttcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccg 107
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 286 gtcttcaactcctggcaacagtatggaactcctagctactggatgcagacatttttccg 344
>gb|CA028812.1|CA028812 HZ63F05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63F05
5-PRIME, mRNA sequence
Length = 415
Score = 91.7 bits (46), Expect = 3e-017
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 49 gtcttcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccg 107
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 286 gtcttcaactcctggcaacagtatggaactcctagctactggatgcagacatttttccg 344
>gb|BF259719.2|BF259719 HVSMEf0020B07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020B07f, mRNA sequence
Length = 832
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 355 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 414
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 415 aactcctagttactggatgcaga 437
>gb|BI948632.1|BI948632 HVSMEl0010F06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0010F06f, mRNA sequence
Length = 817
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 291 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 350
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 351 aactcctagttactggatgcaga 373
Score = 79.8 bits (40), Expect = 1e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 418 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 477
Query: 202 aatagcttcctgagagtgaaggtcgtgaacttcgggtcggacaccgttaacctcac 257
|||| |||||||||||| |||| ||||||||||||||||||||||| | ||||||
Sbjct: 478 aataacttcctgagagtaaaggatgtgaacttcgggtcggacaccgtgagcctcac 533
>gb|AV925177.1|AV925177 AV925177 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22b16 5', mRNA sequence
Length = 639
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 522 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 581
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 582 aactcctagttactggatgcaga 604
>gb|BJ464212.1|BJ464212 BJ464212 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33f17 5', mRNA sequence
Length = 591
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 387 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 446
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 447 aactcctagttactggatgcaga 469
Score = 42.1 bits (21), Expect = 0.028
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 142 atcagttcccggtactcgagttcgctggccgcgtctgcgatcacgtggcaggatgcagag 201
||||||||| | ||||| |||| || || || ||||| ||||| ||||||||| | | |
Sbjct: 514 atcagttccagctactctggttctctagcagcatctgctatcacctggcaggattccggg 573
Query: 202 aatagcttcctgagagt 218
|||| ||||||||||||
Sbjct: 574 aataacttcctgagagt 590
>gb|BU988298.1|BU988298 HF17D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF17D19
5-PRIME, mRNA sequence
Length = 638
Score = 87.7 bits (44), Expect = 5e-016
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||||| |||||||||||||||||||| || ||
Sbjct: 465 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaacaatacgg 524
Query: 75 nactcctagctactggatgcaga 97
|||||||| |||||||||||||
Sbjct: 525 aactcctagttactggatgcaga 547
>gb|BI776606.2|BI776606 EBpi07_SQ001_B24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_B24 5', mRNA sequence
Length = 453
Score = 83.8 bits (42), Expect = 8e-015
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 49 gtcttcaactcctggcaacactatggnactcctagctactggatgcagacnnttttccg 107
|||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||
Sbjct: 62 gtcttcaactcctggcaacagtatggaactcctagctactggatgcatacatttttccg 120
>gb|BM097298.1|BM097298 EBro01_SQ004_M09_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_M09 5', mRNA sequence
Length = 429
Score = 77.8 bits (39), Expect = 5e-013
Identities = 159/199 (79%)
Strand = Plus / Plus
Query: 287 tcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaact 346
||||||||||||| |||| ||| || || |||||||| |||| || | ||| || || |
Sbjct: 42 tcaacgcgctggggtcaaacgctactgttctcacgtccagcaatgtaaaggatgaaaatt 101
Query: 347 ccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagc 406
| ||||||||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |
Sbjct: 102 ctttcagtaacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaac 161
Query: 407 agatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagc 466
|||||||||||||||| ||| | ||||||||| || | ||||| || ||||| ||| ||
Sbjct: 162 agatgcaggtcacgctcgctgcccactccttctcctcgttcgaccttgcgcttgctcagt 221
Query: 467 ccaagcttgtggcggagat 485
|| ||||||| || |||||
Sbjct: 222 ccgagcttgtcgcagagat 240
>gb|AJ462649.1|AJ462649 AJ462649 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200082D06F1, mRNA sequence
Length = 240
Score = 77.8 bits (39), Expect = 5e-013
Identities = 159/199 (79%)
Strand = Plus / Plus
Query: 287 tcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaact 346
||||||||||||| |||| ||| || || |||||||| |||| || | ||| || || |
Sbjct: 27 tcaacgcgctggggtcaaacgctactgttctcacgtccagcaatgtaaaggatgaaaatt 86
Query: 347 ccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagc 406
| ||||||||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |
Sbjct: 87 ctttcagtaacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaac 146
Query: 407 agatgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagc 466
|||||||||||||||| ||| | ||||||||| || | ||||| || ||||| ||| ||
Sbjct: 147 agatgcaggtcacgctcgctgcccactccttctcctcgttcgaccttgcgcttgctcagt 206
Query: 467 ccaagcttgtggcggagat 485
|| ||||||| || |||||
Sbjct: 207 ccgagcttgtcgcagagat 225
>gb|BF631424.2|BF631424 HVSMEb0015O10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015O10f, mRNA sequence
Length = 762
Score = 75.8 bits (38), Expect = 2e-012
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaacactatgg 74
|||||| || ||||||||||| || || ||| | |||||||||||||||||||| || ||
Sbjct: 94 cgacaacgatcaaacgtggaatccagatgctgtcgtcttcaactcctggcaacaatacgg 153
Query: 75 nactcctagctactggatgca 95
|||||||| |||||||||||
Sbjct: 154 aactcctagttactggatgca 174
>gb|AL500477.1|AL500477 AL500477 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06M19r 3', mRNA sequence
Length = 514
Score = 71.9 bits (36), Expect = 3e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 287 tcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaact 346
||||||||||||| |||| ||| || || |||||||| |||| || | ||| || || |
Sbjct: 424 tcaacgcgctggggtcaaacgctactgttctcacgtccagcaatgtaaaggatgaaaatt 365
Query: 347 ccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagc 406
| ||||||||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |
Sbjct: 364 ctttcagtaacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaac 305
Query: 407 agatgcaggtcacgctggctcctcactccttc 438
|||||||||||||||| ||| | |||||||||
Sbjct: 304 agatgcaggtcacgctcgctgcccactccttc 273
>gb|AL500426.1|AL500426 AL500426 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK06J09r 3', mRNA sequence
Length = 186
Score = 65.9 bits (33), Expect = 2e-009
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 175 tctgcgatcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaacttc 234
||||| ||||| ||||||||| | | ||||| |||||| ||||| ||| | ||||||||
Sbjct: 101 tctgctatcacctggcaggattccgggaataacttcctnagagtaaagattgtgaacttn 42
Query: 235 gggtcggacaccgttaacctcac 257
|||||||||||||| | ||||||
Sbjct: 41 gggtcggacaccgtgagcctcac 19
>gb|CA006297.1|CA006297 HU14I23u HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
3-PRIME, mRNA sequence
Length = 570
Score = 65.9 bits (33), Expect = 2e-009
Identities = 105/129 (81%)
Strand = Plus / Minus
Query: 354 taacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcagatgca 413
|||||| |||||||||| |||||||| | || || || |||| |||||| |||||||
Sbjct: 568 taacccaaacaaggttgtgccggtgacggtcgagttgcgcgacgctgcggaggagatgca 509
Query: 414 ggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagcccaagct 473
|||||||||| |||||||||| |||| || ||||| |||||| |||| || ||| |||
Sbjct: 508 ggtcacgctgcctcctcactctctcactgcattcgacctggcgttggcgcagtccaggct 449
Query: 474 tgtggcgga 482
||| |||||
Sbjct: 448 tgtagcgga 440
>gb|AL500044.1|AL500044 AL500044 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04K11r 3', mRNA sequence
Length = 499
Score = 63.9 bits (32), Expect = 8e-009
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 287 tcaacgcgctgggatcaaccgccaccgtcctcacgtctggcaacgtcatggacgagaact 346
||||||||||||| |||| ||| || || |||||||| |||| || | ||| || || |
Sbjct: 417 tcaacgcgctggggtcaaacgctactgttctcacgtccagcaatgtaaaggatgaaaatt 358
Query: 347 ccttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagc 406
| ||||||||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |
Sbjct: 357 ctttcagtaacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaac 298
Query: 407 agatgcaggtcacgct 422
||||||||||||||||
Sbjct: 297 agatgcaggtcacgct 282
>gb|BM928839.1|BM928839 LP10017 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-17
similar to Arabinoxylan arabinofuranohydrolase gene,
mRNA sequence
Length = 332
Score = 63.9 bits (32), Expect = 8e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 349 ttcagtaacccgaacaaggttgcgccggtgaaaagccagctgagcaacgccgcggagcag 408
||||||||||| | |||||| | ||| |||| ||| ||| || ||||||||||| |||
Sbjct: 76 ttcagtaacccaaccaaggtcgtgcccgtgacaagtcagttgcataacgccgcggaacag 135
Query: 409 atgcaggtcacgctggctcctcactccttcaccgccttcgatctggcgctggctgagccc 468
|||||||||||||| ||| | ||||||||| || | ||||| || ||||| ||| || ||
Sbjct: 136 atgcaggtcacgctcgctgcccactccttctcctcgttcgaccttgcgcttgctcagtcc 195
Query: 469 aagcttgt 476
|||||||
Sbjct: 196 gagcttgt 203
>gb|AV912856.1|AV912856 AV912856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j19 5', mRNA sequence
Length = 585
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 15 cgacaatgaccaaacgtggaacccggacgctattgtcttcaactcctggcaaca 68
|||||| || ||||||||||| || || ||||| ||||||||||||||||||||
Sbjct: 526 cgacaacgatcaaacgtggaatccagatgctatcgtcttcaactcctggcaaca 579
>gb|BI951143.1|BI951143 HVSMEl0024K06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0024K06f, mRNA sequence
Length = 866
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 181 atcacgtggcaggatgcagagaatagcttcctgagagtgaaggtcgtgaacttcgggtcg 240
||||| ||||||||| | | | ||| |||||||||||| ||| | |||||||||||||||
Sbjct: 89 atcacctggcaggattccggggataacttcctgagagtaaagattgtgaacttcgggtcg 148
Query: 241 gacaccg 247
| |||||
Sbjct: 149 ggcaccg 155
>gb|BF622269.2|BF622269 HVSMEa0002G17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002G17f, mRNA sequence
Length = 709
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 670 tgcttggtgttggttggtt 688
|||||||||||||||||||
Sbjct: 373 tgcttggtgttggttggtt 355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,434
Number of Sequences: 312970
Number of extensions: 67434
Number of successful extensions: 16011
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15952
Number of HSP's gapped (non-prelim): 59
length of query: 798
length of database: 175,134,539
effective HSP length: 19
effective length of query: 779
effective length of database: 169,188,109
effective search space: 131797536911
effective search space used: 131797536911
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)