BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE411228.1|BE411228 ISC003.D06F990519 ITEC ISC Barley Le... 212 1e-053
gb|AV920614.1|AV920614 AV920614 K. Sato unpublished cDNA li... 212 1e-053
gb|AV923140.1|AV923140 AV923140 K. Sato unpublished cDNA li... 212 1e-053
gb|AV923858.1|AV923858 AV923858 K. Sato unpublished cDNA li... 212 1e-053
gb|AV927389.1|AV927389 AV927389 K. Sato unpublished cDNA li... 212 1e-053
gb|AV927848.1|AV927848 AV927848 K. Sato unpublished cDNA li... 212 1e-053
gb|AJ435086.1|AJ435086 AJ435086 S00002 Hordeum vulgare subs... 212 1e-053
gb|AJ463130.1|AJ463130 AJ463130 S00002 Hordeum vulgare subs... 212 1e-053
gb|AJ463133.1|AJ463133 AJ463133 S00002 Hordeum vulgare subs... 212 1e-053
gb|AJ463134.1|AJ463134 AJ463134 S00002 Hordeum vulgare subs... 212 1e-053
gb|BJ468336.1|BJ468336 BJ468336 K. Sato unpublished cDNA li... 212 1e-053
gb|BJ471344.1|BJ471344 BJ471344 K. Sato unpublished cDNA li... 212 1e-053
gb|BG415791.1|BG415791 HVSMEk0007N02f Hordeum vulgare testa... 208 2e-052
gb|BE231039.2|BE231039 HVSMEg0015P16f Hordeum vulgare pre-a... 208 2e-052
gb|BG300361.2|BG300361 HVSMEb0016B10f Hordeum vulgare seedl... 208 2e-052
gb|BF260825.3|BF260825 HVSMEf0023A17f Hordeum vulgare seedl... 208 2e-052
gb|AW982761.3|AW982761 HVSMEg0004C09f Hordeum vulgare pre-a... 208 2e-052
gb|AW983447.3|AW983447 HVSMEg0010K18f Hordeum vulgare pre-a... 208 2e-052
gb|BE602529.3|BE602529 HVSMEh0099L02f Hordeum vulgare 5-45 ... 208 2e-052
gb|AV909343.1|AV909343 AV909343 K. Sato unpublished cDNA li... 208 2e-052
gb|AV911233.1|AV911233 AV911233 K. Sato unpublished cDNA li... 208 2e-052
gb|BJ450779.1|BJ450779 BJ450779 K. Sato unpublished cDNA li... 208 2e-052
gb|BJ458208.1|BJ458208 BJ458208 K. Sato unpublished cDNA li... 208 2e-052
gb|BQ466277.1|BQ466277 HT02B11r HT Hordeum vulgare subsp. v... 208 2e-052
gb|BM377449.2|BM377449 EBem04_SQ003_C18_R embryo, 12 DPA, n... 208 2e-052
gb|BM372911.2|BM372911 EBma04_SQ002_F21_R maternal, 10 DPA,... 208 2e-052
gb|BM372912.2|BM372912 EBma04_SQ002_F22_R maternal, 10 DPA,... 208 2e-052
gb|BI780826.2|BI780826 EBma05_SQ001_A24_R maternal, 12 DPA,... 208 2e-052
gb|BM099012.2|BM099012 EBpi05_SQ002_L05_R pistil, 8 DPA, no... 208 2e-052
gb|BI778909.2|BI778909 EBro01_SQ002_A02_R root, 3 week, hyd... 208 2e-052
gb|BQ766443.1|BQ766443 EBro08_SQ006_F05_R root, 3 week, dro... 208 2e-052
gb|BU975888.1|BU975888 HB32J19r BC Hordeum vulgare subsp. v... 208 2e-052
gb|BU977063.1|BU977063 HA10M11r HA Hordeum vulgare subsp. v... 208 2e-052
gb|BU977064.1|BU977064 HA10M11u HA Hordeum vulgare subsp. v... 208 2e-052
gb|BU978889.1|BU978889 HA14I24r HA Hordeum vulgare subsp. v... 208 2e-052
gb|BU981529.1|BU981529 HA23O10r HA Hordeum vulgare subsp. v... 208 2e-052
gb|BU984270.1|BU984270 HF03H12r HF Hordeum vulgare subsp. v... 208 2e-052
gb|BU998256.1|BU998256 HI10H16r HI Hordeum vulgare subsp. v... 208 2e-052
gb|BU998333.1|BU998333 HI10L13r HI Hordeum vulgare subsp. v... 208 2e-052
gb|CA015174.1|CA015174 HT13I04r HT Hordeum vulgare subsp. v... 208 2e-052
gb|CA028346.1|CA028346 HZ61L09r HZ Hordeum vulgare subsp. v... 208 2e-052
gb|CA029749.1|CA029749 HX05B19r HX Hordeum vulgare subsp. v... 208 2e-052
gb|CA029927.1|CA029927 HX05J15r HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB859446.1|CB859446 HI10H16w HI Hordeum vulgare subsp. v... 208 2e-052
gb|CB859517.1|CB859517 HI10L13w HI Hordeum vulgare subsp. v... 208 2e-052
gb|CB874383.1|CB874383 HX05B19w HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB874548.1|CB874548 HX05J15w HX Hordeum vulgare subsp. v... 208 2e-052
gb|CB882517.1|CB882517 HL02B11w HL Hordeum vulgare subsp. v... 208 2e-052
gb|CV054636.1|CV054636 BNEL111f4 Barley EST endosperm libra... 208 2e-052
gb|BF627285.2|BF627285 HVSMEb0004H05f Hordeum vulgare seedl... 204 2e-051
gb|BE213705.1|BE213705 HV_CEb0001A19f Hordeum vulgare seedl... 204 2e-051
gb|BG300563.1|BG300563 HVSMEb0017I03f Hordeum vulgare seedl... 200 4e-050
gb|CK122256.1|CK122256 BES1824102j15 BES1824 Hordeum vulgar... 194 2e-048
gb|BQ761430.1|BQ761430 EBro06_SQ001_O05_R root, 3 week, dro... 192 9e-048
gb|CB876466.1|CB876466 HX11F18w HX Hordeum vulgare subsp. v... 192 9e-048
gb|AV915516.1|AV915516 AV915516 K. Sato unpublished cDNA li... 188 1e-046
gb|BG414674.2|BG414674 HVSMEk0003F02f Hordeum vulgare testa... 178 1e-043
gb|BM097979.2|BM097979 EBpi03_SQ002_D10_R pistil, 4 DPA, no... 176 6e-043
gb|BE411084.1|BE411084 ISC002.B10F990513 ITEC ISC Barley Le... 174 2e-042
gb|CA031867.1|CA031867 HX11F18r HX Hordeum vulgare subsp. v... 172 9e-042
gb|BM443559.2|BM443559 EBro02_SQ005_K19_R root, 3 week, hyd... 157 5e-037
gb|BF624530.2|BF624530 HVSMEa0017A17f Hordeum vulgare seedl... 155 2e-036
gb|AJ436142.1|AJ436142 AJ436142 S00002 Hordeum vulgare subs... 133 8e-030
gb|AJ463131.1|AJ463131 AJ463131 S00002 Hordeum vulgare subs... 129 1e-028
gb|BM370818.1|BM370818 EBro04_SQ002_G05_R root, 3 week, sal... 121 3e-026
gb|AJ433925.1|AJ433925 AJ433925 S00002 Hordeum vulgare subs... 78 4e-013
gb|AJ463132.1|AJ463132 AJ463132 S00002 Hordeum vulgare subs... 74 6e-012
gb|BQ758377.1|BQ758377 EBma05_SQ001_A23_R maternal, 12 DPA,... 74 6e-012
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 48 3e-004
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.001
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.001
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.001
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.001
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.001
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.001
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.001
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.001
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.001
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 46 0.001
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.001
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 46 0.001
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.001
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.001
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.001
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.001
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 46 0.001
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 46 0.001
gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA,... 42 0.021
gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA,... 42 0.021
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.021
gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA li... 42 0.021
gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA li... 42 0.021
gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA li... 42 0.021
gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA li... 42 0.021
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.021
gb|BE601907.3|BE601907 HVSMEh0099P13f Hordeum vulgare 5-45 ... 40 0.084
gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA li... 40 0.084
gb|BE420710.1|BE420710 HWM001.G03 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE420741.1|BE420741 HWM002.A10 ITEC HWM Barley Leaf Libr... 38 0.33
gb|AV910330.1|AV910330 AV910330 K. Sato unpublished cDNA li... 38 0.33
gb|AV912480.1|AV912480 AV912480 K. Sato unpublished cDNA li... 38 0.33
gb|AV931455.1|AV931455 AV931455 K. Sato unpublished cDNA li... 38 0.33
gb|BJ451518.1|BJ451518 BJ451518 K. Sato unpublished cDNA li... 38 0.33
gb|BJ451809.1|BJ451809 BJ451809 K. Sato unpublished cDNA li... 38 0.33
gb|BJ459014.1|BJ459014 BJ459014 K. Sato unpublished cDNA li... 38 0.33
gb|BJ459309.1|BJ459309 BJ459309 K. Sato unpublished cDNA li... 38 0.33
gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulg... 38 0.33
>gb|BE411228.1|BE411228 ISC003.D06F990519 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC003.D06, mRNA sequence
Length = 409
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 333 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 274
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 273 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 214
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 213 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 154
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 153 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 94
Query: 479 catggtg 485
|||||||
Sbjct: 93 catggtg 87
>gb|AV920614.1|AV920614 AV920614 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14o01 3', mRNA sequence
Length = 479
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 146 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 205
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 206 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 265
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 266 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 325
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 326 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 385
Query: 479 catggtg 485
|||||||
Sbjct: 386 catggtg 392
>gb|AV923140.1|AV923140 AV923140 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3p14 5', mRNA sequence
Length = 568
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 337 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 278
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 277 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 218
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 217 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 158
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 157 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 98
Query: 479 catggtg 485
|||||||
Sbjct: 97 catggtg 91
>gb|AV923858.1|AV923858 AV923858 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1n18 5', mRNA sequence
Length = 559
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 327 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 268
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 267 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 208
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 207 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 148
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 147 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 88
Query: 479 catggtg 485
|||||||
Sbjct: 87 catggtg 81
>gb|AV927389.1|AV927389 AV927389 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1n18 3', mRNA sequence
Length = 507
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 181 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 240
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 241 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 300
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 301 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 360
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 361 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 420
Query: 479 catggtg 485
|||||||
Sbjct: 421 catggtg 427
>gb|AV927848.1|AV927848 AV927848 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3p14 3', mRNA sequence
Length = 523
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 197 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 256
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 257 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 316
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 317 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 376
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 377 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 436
Query: 479 catggtg 485
|||||||
Sbjct: 437 catggtg 443
>gb|AJ435086.1|AJ435086 AJ435086 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200008H12F1, mRNA sequence
Length = 525
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 431 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 372
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 371 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 312
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 311 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 252
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 251 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 192
Query: 479 catggtg 485
|||||||
Sbjct: 191 catggtg 185
>gb|AJ463130.1|AJ463130 AJ463130 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200044D10F1, mRNA sequence
Length = 420
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 323 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 264
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 263 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 204
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 203 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 144
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 143 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 84
Query: 479 catggtg 485
|||||||
Sbjct: 83 catggtg 77
>gb|AJ463133.1|AJ463133 AJ463133 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200077F07F1, mRNA sequence
Length = 360
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 254 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 195
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 194 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 135
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 134 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 75
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 74 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 15
Query: 479 catggtg 485
|||||||
Sbjct: 14 catggtg 8
>gb|AJ463134.1|AJ463134 AJ463134 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200077H04F1, mRNA sequence
Length = 360
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 293 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 234
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 233 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 174
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 173 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 114
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 113 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 54
Query: 479 catggtg 485
|||||||
Sbjct: 53 catggtg 47
>gb|BJ468336.1|BJ468336 BJ468336 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38e19 3', mRNA sequence
Length = 539
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 219 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 278
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 279 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 338
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 339 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 398
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 399 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 458
Query: 479 catggtg 485
|||||||
Sbjct: 459 catggtg 465
>gb|BJ471344.1|BJ471344 BJ471344 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17o19 5', mRNA sequence
Length = 449
Score = 212 bits (107), Expect = 1e-053
Identities = 212/247 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 339 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 280
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 279 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 220
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 219 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 160
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 159 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 100
Query: 479 catggtg 485
|||||||
Sbjct: 99 catggtg 93
>gb|BG415791.1|BG415791 HVSMEk0007N02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007N02f, mRNA sequence
Length = 627
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| || | ||| ||||| || || ||||| |||||||| ||||| || |
Sbjct: 353 tcactgagacctggccattgggtccagggcttctatcatcacaacactatttcctctcag 294
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 293 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 234
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 233 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 174
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 173 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 114
Query: 479 catgg 483
|||||
Sbjct: 113 catgg 109
>gb|BE231039.2|BE231039 HVSMEg0015P16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015P16f, mRNA sequence
Length = 928
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 306 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 247
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 246 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 187
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 186 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 127
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 126 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 67
Query: 479 catgg 483
|||||
Sbjct: 66 catgg 62
>gb|BG300361.2|BG300361 HVSMEb0016B10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016B10f, mRNA sequence
Length = 570
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 330 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 271
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 270 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 211
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 210 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 151
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 150 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 91
Query: 479 catgg 483
|||||
Sbjct: 90 catgg 86
>gb|BF260825.3|BF260825 HVSMEf0023A17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023A17f, mRNA sequence
Length = 504
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 255 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 196
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 195 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 136
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 135 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 76
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 75 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 16
Query: 479 catgg 483
|||||
Sbjct: 15 catgg 11
>gb|AW982761.3|AW982761 HVSMEg0004C09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004C09f, mRNA sequence
Length = 551
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 322 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 263
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 262 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 203
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 202 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 143
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 142 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 83
Query: 479 catgg 483
|||||
Sbjct: 82 catgg 78
>gb|AW983447.3|AW983447 HVSMEg0010K18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010K18f, mRNA sequence
Length = 568
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 326 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 267
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 266 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 207
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 206 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 147
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 146 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 87
Query: 479 catgg 483
|||||
Sbjct: 86 catgg 82
>gb|BE602529.3|BE602529 HVSMEh0099L02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099L02f, mRNA sequence
Length = 570
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 323 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 264
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 263 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 204
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 203 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 144
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 143 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 84
Query: 479 catgg 483
|||||
Sbjct: 83 catgg 79
>gb|AV909343.1|AV909343 AV909343 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12h20 5', mRNA sequence
Length = 548
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 314 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 255
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 254 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 195
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 194 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 135
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 134 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 75
Query: 479 catgg 483
|||||
Sbjct: 74 catgg 70
>gb|AV911233.1|AV911233 AV911233 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12h20 3', mRNA sequence
Length = 470
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 146 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 205
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 206 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 265
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 266 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 325
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 326 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 385
Query: 479 catgg 483
|||||
Sbjct: 386 catgg 390
>gb|BJ450779.1|BJ450779 BJ450779 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31b22 5', mRNA sequence
Length = 538
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 336 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 277
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 276 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 217
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 216 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 157
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 156 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 97
Query: 479 catgg 483
|||||
Sbjct: 96 catgg 92
>gb|BJ458208.1|BJ458208 BJ458208 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31b22 3', mRNA sequence
Length = 518
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 218 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 277
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 278 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 337
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 338 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 397
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 398 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 457
Query: 479 catgg 483
|||||
Sbjct: 458 catgg 462
>gb|BQ466277.1|BQ466277 HT02B11r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B11
5-PRIME, mRNA sequence
Length = 552
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 323 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 264
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 263 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 204
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 203 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 144
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 143 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 84
Query: 479 catgg 483
|||||
Sbjct: 83 catgg 79
>gb|BM377449.2|BM377449 EBem04_SQ003_C18_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ003_C18 5', mRNA sequence
Length = 532
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 307 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 248
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 247 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 188
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 187 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 128
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 127 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 68
Query: 479 catgg 483
|||||
Sbjct: 67 catgg 63
>gb|BM372911.2|BM372911 EBma04_SQ002_F21_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_F21 5', mRNA sequence
Length = 511
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 347 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 288
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 287 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 228
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 227 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 168
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 167 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 108
Query: 479 catgg 483
|||||
Sbjct: 107 catgg 103
>gb|BM372912.2|BM372912 EBma04_SQ002_F22_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_F22 5', mRNA sequence
Length = 552
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 347 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 288
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 287 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 228
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 227 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 168
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 167 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 108
Query: 479 catgg 483
|||||
Sbjct: 107 catgg 103
>gb|BI780826.2|BI780826 EBma05_SQ001_A24_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_A24 5', mRNA sequence
Length = 503
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 324 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 265
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 264 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 205
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 204 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 145
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 144 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 85
Query: 479 catgg 483
|||||
Sbjct: 84 catgg 80
>gb|BM099012.2|BM099012 EBpi05_SQ002_L05_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ002_L05 5', mRNA sequence
Length = 515
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 329 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 270
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 269 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 210
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 209 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 150
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 149 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 90
Query: 479 catgg 483
|||||
Sbjct: 89 catgg 85
>gb|BI778909.2|BI778909 EBro01_SQ002_A02_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_A02 5', mRNA sequence
Length = 441
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 307 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 248
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 247 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 188
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 187 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 128
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 127 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 68
Query: 479 catgg 483
|||||
Sbjct: 67 catgg 63
>gb|BQ766443.1|BQ766443 EBro08_SQ006_F05_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_F05 5', mRNA sequence
Length = 583
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 327 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 268
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 267 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 208
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 207 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 148
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 147 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 88
Query: 479 catgg 483
|||||
Sbjct: 87 catgg 83
>gb|BU975888.1|BU975888 HB32J19r BC Hordeum vulgare subsp. vulgare cDNA clone HB32J19
5-PRIME, mRNA sequence
Length = 470
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 378 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 319
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 318 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 259
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 258 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 199
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 198 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 139
Query: 479 catgg 483
|||||
Sbjct: 138 catgg 134
>gb|BU977063.1|BU977063 HA10M11r HA Hordeum vulgare subsp. vulgare cDNA clone HA10M11
5-PRIME, mRNA sequence
Length = 593
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 364 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 305
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 304 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 245
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 244 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 185
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 184 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 125
Query: 479 catgg 483
|||||
Sbjct: 124 catgg 120
>gb|BU977064.1|BU977064 HA10M11u HA Hordeum vulgare subsp. vulgare cDNA clone HA10M11
3-PRIME, mRNA sequence
Length = 501
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 230 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 289
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 290 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 349
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 350 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 409
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 410 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 469
Query: 479 catgg 483
|||||
Sbjct: 470 catgg 474
>gb|BU978889.1|BU978889 HA14I24r HA Hordeum vulgare subsp. vulgare cDNA clone HA14I24
5-PRIME, mRNA sequence
Length = 543
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 334 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 275
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 274 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 215
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 214 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 155
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 154 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 95
Query: 479 catgg 483
|||||
Sbjct: 94 catgg 90
>gb|BU981529.1|BU981529 HA23O10r HA Hordeum vulgare subsp. vulgare cDNA clone HA23O10
5-PRIME, mRNA sequence
Length = 542
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 338 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 279
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 278 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 219
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 218 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 159
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 158 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 99
Query: 479 catgg 483
|||||
Sbjct: 98 catgg 94
>gb|BU984270.1|BU984270 HF03H12r HF Hordeum vulgare subsp. vulgare cDNA clone HF03H12
5-PRIME, mRNA sequence
Length = 571
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 327 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 268
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 267 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 208
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 207 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 148
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 147 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 88
Query: 479 catgg 483
|||||
Sbjct: 87 catgg 83
>gb|BU998256.1|BU998256 HI10H16r HI Hordeum vulgare subsp. vulgare cDNA clone HI10H16
5-PRIME, mRNA sequence
Length = 590
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 351 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 292
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 291 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 232
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 231 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 172
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 171 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 112
Query: 479 catgg 483
|||||
Sbjct: 111 catgg 107
>gb|BU998333.1|BU998333 HI10L13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10L13
5-PRIME, mRNA sequence
Length = 567
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 387 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 328
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 327 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 268
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 267 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 208
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 207 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 148
Query: 479 catgg 483
|||||
Sbjct: 147 catgg 143
>gb|CA015174.1|CA015174 HT13I04r HT Hordeum vulgare subsp. vulgare cDNA clone HT13I04
5-PRIME, mRNA sequence
Length = 537
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 333 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 274
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 273 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 214
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 213 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 154
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 153 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 94
Query: 479 catgg 483
|||||
Sbjct: 93 catgg 89
>gb|CA028346.1|CA028346 HZ61L09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61L09
5-PRIME, mRNA sequence
Length = 623
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 353 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 294
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 293 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 234
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 233 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 174
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 173 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 114
Query: 479 catgg 483
|||||
Sbjct: 113 catgg 109
>gb|CA029749.1|CA029749 HX05B19r HX Hordeum vulgare subsp. vulgare cDNA clone HX05B19
5-PRIME, mRNA sequence
Length = 555
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 331 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 272
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 271 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 212
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 211 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 152
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 151 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 92
Query: 479 catgg 483
|||||
Sbjct: 91 catgg 87
>gb|CA029927.1|CA029927 HX05J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX05J15
5-PRIME, mRNA sequence
Length = 554
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 330 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 271
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 270 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 211
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 210 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 151
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 150 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 91
Query: 479 catgg 483
|||||
Sbjct: 90 catgg 86
>gb|CB859446.1|CB859446 HI10H16w HI Hordeum vulgare subsp. vulgare cDNA clone HI10H16
3-PRIME, mRNA sequence
Length = 538
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 243 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 302
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 303 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 362
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 363 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 422
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 423 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 482
Query: 479 catgg 483
|||||
Sbjct: 483 catgg 487
>gb|CB859517.1|CB859517 HI10L13w HI Hordeum vulgare subsp. vulgare cDNA clone HI10L13
3-PRIME, mRNA sequence
Length = 630
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 245 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 304
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 305 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 364
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 365 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 424
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 425 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 484
Query: 479 catgg 483
|||||
Sbjct: 485 catgg 489
>gb|CB874383.1|CB874383 HX05B19w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B19
3-PRIME, mRNA sequence
Length = 552
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 225 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 284
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 285 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 344
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 345 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 404
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 405 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 464
Query: 479 catgg 483
|||||
Sbjct: 465 catgg 469
>gb|CB874548.1|CB874548 HX05J15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05J15
3-PRIME, mRNA sequence
Length = 552
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Plus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 225 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 284
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 285 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 344
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 345 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 404
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 405 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 464
Query: 479 catgg 483
|||||
Sbjct: 465 catgg 469
>gb|CB882517.1|CB882517 HL02B11w HL Hordeum vulgare subsp. vulgare cDNA clone HL02B11
3-PRIME, mRNA sequence
Length = 575
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 331 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 272
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 271 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 212
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 211 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 152
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 151 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 92
Query: 479 catgg 483
|||||
Sbjct: 91 catgg 87
>gb|CV054636.1|CV054636 BNEL111f4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL111f4 5' similar to putative
small nuclear ribonucleoprotein polypeptide G, mRNA
sequence
Length = 490
Score = 208 bits (105), Expect = 2e-052
Identities = 210/245 (85%)
Strand = Plus / Minus
Query: 239 tcactgtgacctcgcaactggctccagtgcctcgatcattacaacactgtttcccctgat 298
|||||| ||||| |||| ||| || || || || ||||| |||||||| ||||| || |
Sbjct: 324 tcactgagacctggcaattggttcaagggcttctatcatcacaacactatttcctctcag 265
Query: 299 aaccaccattccaatatctgttttgtcatttccattgacctccacagtgttgtccaccac 358
||||||||| || || || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 264 aaccaccatccctatgtcggttttctcatctccattgacctccacagtgttgtccaccac 205
Query: 359 cagattcatgaactggtcgaacccacgaagtgtgccgataacaacacggtttgcattcat 418
|| |||||||||||| || || |||||||| ||||| || ||||| ||||| |||||||
Sbjct: 204 caaattcatgaactgatcaaatccacgaagcgtgccaatgacaacgcggttcgcattcag 145
Query: 419 cttaatctgaagcttcttgtccatgtacttcttgagatccggaggctgccccgagcggct 478
||| || || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 144 cttgatttggagcttcttgtccatgtacttcttcagatccggcggctgccccgatcggct 85
Query: 479 catgg 483
|||||
Sbjct: 84 catgg 80
>gb|BF627285.2|BF627285 HVSMEb0004H05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H05f, mRNA sequence
Length = 740
Score = 204 bits (103), Expect = 2e-051
Identities = 184/211 (87%)
Strand = Plus / Minus
Query: 273 atcattacaacactgtttcccctgataaccaccattccaatatctgttttgtcatttcca 332
||||| |||||||| ||||| || | ||||||||| || || || ||||| |||| ||||
Sbjct: 293 atcatcacaacactatttcctctcagaaccaccatccctatgtcggttttctcatctcca 234
Query: 333 ttgacctccacagtgttgtccaccaccagattcatgaactggtcgaacccacgaagtgtg 392
|||||||||||||||||||||||||||| |||||||||||| || || |||||||| |||
Sbjct: 233 ttgacctccacagtgttgtccaccaccaaattcatgaactgatcaaatccacgaagcgtg 174
Query: 393 ccgataacaacacggtttgcattcatcttaatctgaagcttcttgtccatgtacttcttg 452
|| || ||||| ||||| ||||||| ||| || || |||||||||||||||||||||||
Sbjct: 173 ccaatgacaacgcggttcgcattcagcttgatttggagcttcttgtccatgtacttcttc 114
Query: 453 agatccggaggctgccccgagcggctcatgg 483
|||||||| ||||||||||| ||||||||||
Sbjct: 113 agatccggcggctgccccgatcggctcatgg 83
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,238
Number of Sequences: 312970
Number of extensions: 53238
Number of successful extensions: 15968
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15857
Number of HSP's gapped (non-prelim): 110
length of query: 621
length of database: 175,134,539
effective HSP length: 19
effective length of query: 602
effective length of database: 169,188,109
effective search space: 101851241618
effective search space used: 101851241618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)