BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161254.2.1
(1192 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedl... 377 e-103
gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA li... 377 e-103
gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. v... 377 e-103
gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. v... 377 e-103
gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-a... 359 1e-097
gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. v... 327 5e-088
gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. v... 192 2e-047
gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedl... 163 2e-038
gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, ... 159 3e-037
gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. v... 141 6e-032
gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. v... 135 4e-030
gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. v... 127 9e-028
gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA li... 125 4e-027
gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. v... 121 6e-026
gb|AL450866.1|AL450866 AL450866 Hordeum vulgare Barke etiol... 117 9e-025
gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. v... 117 9e-025
gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike... 111 5e-023
gb|BQ460354.1|BQ460354 HA09O20r HA Hordeum vulgare subsp. v... 109 2e-022
gb|BU967351.1|BU967351 HB04A14r BC Hordeum vulgare subsp. v... 109 2e-022
gb|BU983820.1|BU983820 HA31C09r HA Hordeum vulgare subsp. v... 109 2e-022
gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green... 107 8e-022
gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. v... 107 8e-022
gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. v... 107 8e-022
gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. v... 107 8e-022
gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. v... 107 8e-022
gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, ... 103 1e-020
gb|AL508926.1|AL508926 AL508926 Hordeum vulgare Barke devel... 86 3e-015
gb|BQ460225.1|BQ460225 HA06N22r HA Hordeum vulgare subsp. v... 78 8e-013
gb|BQ469584.1|BQ469584 HZ01D22r HZ Hordeum vulgare subsp. v... 68 7e-010
gb|AV836294.1|AV836294 AV836294 K. Sato unpublished cDNA li... 48 7e-004
gb|BU990075.1|BU990075 HF23P24r HF Hordeum vulgare subsp. v... 48 7e-004
gb|CA014049.1|CA014049 HT10D23r HT Hordeum vulgare subsp. v... 48 7e-004
>gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I22f, mRNA sequence
Length = 865
Score = 377 bits (190), Expect = e-103
Identities = 324/366 (88%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 197 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 256
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 257 tgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagta 316
Query: 506 acagaggtttcgaagctggagg-ctctcatactccatcaaacatcgacccgtggtccatc 564
| |||||||| ||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct: 317 atagaggttttgaagctggaggactc-catacgccatcaaatattgacccatggtctata 375
Query: 565 attggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaac 624
||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 435
Query: 625 attgttgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtt 684
||| | ||||| ||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct: 436 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 495
Query: 685 tataacccaggtttttggggcatgaacatagaagatgggaaggcctacaatctcgttatg 744
|| ||||| || || ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 496 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 555
Query: 745 tatgtt 750
||||||
Sbjct: 556 tatgtt 561
>gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 5', mRNA sequence
Length = 644
Score = 377 bits (190), Expect = e-103
Identities = 366/422 (86%), Gaps = 2/422 (0%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 212 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 271
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 272 tgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagta 331
Query: 506 acagaggtttcgaagctggagg-ctctcatactccatcaaacatcgacccgtggtccatc 564
| |||||||| ||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct: 332 atagaggttttgaagctggaggactc-catacgccatcaaatattgacccatggtctata 390
Query: 565 attggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaac 624
||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 450
Query: 625 attgttgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtt 684
||| | ||||| ||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct: 451 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 510
Query: 685 tataacccaggtttttggggcatgaacatagaagatgggaaggcctacaatctcgttatg 744
|| ||||| || || ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 511 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 570
Query: 745 tatgttcagtccccagaaacaaaggatctaacagtttcattaacaagctctgatgggttg 804
|||||| | || ||||| | || | |||||||||||| ||||||| |||||||||
Sbjct: 571 tatgttaaatcagcagaagctgcagaattgacagtttcattagcaagctccgatgggttg 630
Query: 805 ca 806
||
Sbjct: 631 ca 632
>gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49N06
5-PRIME, mRNA sequence
Length = 598
Score = 377 bits (190), Expect = e-103
Identities = 324/366 (88%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 202 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 261
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 262 tgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagta 321
Query: 506 acagaggtttcgaagctggagg-ctctcatactccatcaaacatcgacccgtggtccatc 564
| |||||||| ||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct: 322 atagaggttttgaagctggaggactc-catacgccatcaaatattgacccatggtctata 380
Query: 565 attggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaac 624
||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 440
Query: 625 attgttgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtt 684
||| | ||||| ||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct: 441 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 500
Query: 685 tataacccaggtttttggggcatgaacatagaagatgggaaggcctacaatctcgttatg 744
|| ||||| || || ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 501 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 560
Query: 745 tatgtt 750
||||||
Sbjct: 561 tatgtt 566
>gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65L02
5-PRIME, mRNA sequence
Length = 598
Score = 377 bits (190), Expect = e-103
Identities = 324/366 (88%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 202 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 261
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 262 tgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagta 321
Query: 506 acagaggtttcgaagctggagg-ctctcatactccatcaaacatcgacccgtggtccatc 564
| |||||||| ||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct: 322 atagaggttttgaagctggaggactc-catacgccatcaaatattgacccatggtctata 380
Query: 565 attggagatgactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaac 624
||||| || ||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 440
Query: 625 attgttgctctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtt 684
||| | ||||| ||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct: 441 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 500
Query: 685 tataacccaggtttttggggcatgaacatagaagatgggaaggcctacaatctcgttatg 744
|| ||||| || || ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 501 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 560
Query: 745 tatgtt 750
||||||
Sbjct: 561 tatgtt 566
>gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004B07f, mRNA sequence
Length = 605
Score = 359 bits (181), Expect = 1e-097
Identities = 395/465 (84%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 586 tttgtggcgactgatcgtacatcatgtttcagtcgaa-acattgttgctctgaggatgga 644
||||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||
Sbjct: 16 tttgtggcgactgatcgtacatcatgtttcagtcgaagacattatcgctcttaagatgga 75
Query: 645 ggtcctctgtgatgagtgtccagctggtggtgttggtgtttataacccaggtttttgggg 704
||| ||||||||||| || ||||| |||||||||| |||| ||||| || || |||||
Sbjct: 76 ggttctctgtgatgactgcccagccagtggtgttggcatttacaaccctgggttctgggg 135
Query: 705 catgaacatagaagatgggaaggcctacaatctcgttatgtatgttcagtccccagaaac 764
|||||||||||||||||| ||| |||||||||| |||||||||||| | || ||||| |
Sbjct: 136 catgaacatagaagatggaaagacctacaatctagttatgtatgttaaatcagcagaagc 195
Query: 765 aaaggatctaacagtttcattaacaagctctgatgggttgcaaaacttggcttcagctac 824
|| | |||||||||||| ||||||| ||||||||||| || | ||||| | |||
Sbjct: 196 tgcagaattgacagtttcattagcaagctccgatgggttgcagaatcttgcttctgttac 255
Query: 825 aataacagtttctggcacatcaaattggacaaaagtggagcagaagctggttgctaaagg 884
|| ||||| ||||||| || || ||||||||||||||||| || || ||||||||||
Sbjct: 256 tgtaccagttgctggcacttccaactggacaaaagtggagcaaaaattgattgctaaagg 315
Query: 885 aaccaatagaacatcaaggcttcaaataacaacgaacaaaaaaggagttgtttggcttga 944
|| || ||||| ||||| |||||||||||| | ||||| || |||||||| ||| ||||
Sbjct: 316 gacaaacagaacctcaagacttcaaataacatctaacaagaagggagttgtatggtttga 375
Query: 945 tcaagtatcactcatgcctgaagacacatacaagggacatggtttccgcacagaacttat 1004
||||||||||||||||||| |||||| | ||||||||||||||| ||||| ||||| ||
Sbjct: 376 tcaagtatcactcatgccttcagacacgttcaagggacatggttttcgcaccgaactgat 435
Query: 1005 atccatgcttttggatttgaaaccacgattcttgagatttcctgg 1049
|||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 436 atccatgcttttggatctaaaaccacgattcttgagatttcctgg 480
>gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
5-PRIME, mRNA sequence
Length = 598
Score = 327 bits (165), Expect = 5e-088
Identities = 363/429 (84%)
Strand = Plus / Plus
Query: 394 gttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttgggatatttttt 453
|||||| |||| || || ||||| || ||||||||||| || |||||||| ||||| |||
Sbjct: 162 gttgattcctcaccgcaccttgctcgaaagatccctgatacgctgtttggaatattcttt 221
Query: 454 gaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 222 gaggagatcaaccatgcaggagctggtggaatatgggcagaacttgttagtaatagaggt 281
Query: 514 ttcgaagctggaggctctcatactccatcaaacatcgacccgtggtccatcattggagat 573
|| ||||| |||||| | |||||||||||||| || | || ||||||||||||||||||
Sbjct: 282 tttgaagcaggaggcccccatactccatcaaatattaatccatggtccatcattggagat 341
Query: 574 gactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgct 633
||||| ||| | ||||||| || || ||||| ||||||||||||||||||| ||||||
Sbjct: 342 gactcttccatatttgtgggaacagaccgtacgtcatgtttcagtcgaaacaaggttgct 401
Query: 634 ctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtttataaccca 693
|| || |||||||| ||||||||| | || |||| ||| |||||||| |||| |||||
Sbjct: 402 ctaagaatggaggttctctgtgataactgcccagttggcggtgttggcatttacaaccct 461
Query: 694 ggtttttggggcatgaacatagaagatgggaaggcctacaatctcgttatgtatgttcag 753
|| || ||||||||||||||||||||||||||| |||||||||| |||||| |||| ||
Sbjct: 462 gggttctggggcatgaacatagaagatgggaagacctacaatctagttatgcatgtcaag 521
Query: 754 tccccagaaacaaaggatctaacagtttcattaacaagctctgatgggttgcaaaacttg 813
|| |||||||| | || | ||||||||| ||||||||||||| ||| | ||| |||
Sbjct: 522 tcaccagaaacgatagaaatgacagtttcactaacaagctctgacgggctacaagttttg 581
Query: 814 gcttcagct 822
|||||||||
Sbjct: 582 gcttcagct 590
>gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L22
5-PRIME, mRNA sequence
Length = 390
Score = 192 bits (97), Expect = 2e-047
Identities = 165/185 (89%), Gaps = 2/185 (1%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 202 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 261
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct: 262 tgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagta 321
Query: 506 acagaggtttcgaagctggagg-ctctcatactccatcaaacatcgacccgtggtccatc 564
| |||||||| ||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct: 322 atagaggttttgaagctggaggactc-catacgccatcaaatattgacccatggtctata 380
Query: 565 attgg 569
|||||
Sbjct: 381 attgg 385
>gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005C01f, mRNA sequence
Length = 789
Score = 163 bits (82), Expect = 2e-038
Identities = 127/142 (89%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 211 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 270
Query: 446 tattttttgaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagta 505
| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||
Sbjct: 271 tgttttttgaggagatcaaccatgcatgagccggtggcatatgggcagaacttgtgagtg 330
Query: 506 acagaggtttcgaagctggagg 527
| ||||| || |||||||||||
Sbjct: 331 atagagggtttgaagctggagg 352
>gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J08 5', mRNA sequence
Length = 659
Score = 159 bits (80), Expect = 3e-037
Identities = 267/328 (81%), Gaps = 1/328 (0%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 225 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 284
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||| | ||||| |||| |||||
Sbjct: 285 ggattatgggcggagcttgtcagtaacaaaggttttgaaaccggagggcctcacactcct 344
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctccgtgtttgtggcgactgat 600
|||||||| || || ||||| |||||||| || || |||||| | | ||| ||||||
Sbjct: 345 tcaaacatagatccatggtctatcattggtgacgaatcctccatatacgtgaagactgaa 404
Query: 601 cgtacatcatgtttcagtcgaaacattgttgctctgaggatggaggtcctctgtgatgag 660
| ||||| ||||||||| |||| || |||||||| |||||||| | || |||| ||
Sbjct: 405 agaacatcttgtttcagtagaaatatcgttgctctaaggatggaaattctttgtgccaag 464
Query: 661 tgtccagct-ggtggtgttggtgtttataacccaggtttttggggcatgaacatagaaga 719
||||||||| || ||||||||| |||| |||||||| || ||||||||||||||||||||
Sbjct: 465 tgtccagctgggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 524
Query: 720 tgggaaggcctacaatctcgttatgtat 747
|||||| ||| ||||| || ||||||
Sbjct: 525 agggaagagctataatctggtaatgtat 552
>gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65D06
5-PRIME, mRNA sequence
Length = 642
Score = 141 bits (71), Expect = 6e-032
Identities = 209/255 (81%)
Strand = Plus / Plus
Query: 493 gagcttgtcagtaacagaggtttcgaagctggaggctctcatactccatcaaacatcgac 552
|||||||||||||||| |||||| ||||| ||||| |||| ||||| |||||||| ||
Sbjct: 3 gagcttgtcagtaacaaaggttttgaagccggagggcctcacactccttcaaacatagat 62
Query: 553 ccgtggtccatcattggagatgactcctccgtgtttgtggcgactgatcgtacatcatgt 612
|| ||||| |||||||| || || |||||| | | ||| |||||| | ||||| |||
Sbjct: 63 ccatggtctatcattggtgacgaatcctccatatacgtgaagactgaaagaacatcttgt 122
Query: 613 ttcagtcgaaacattgttgctctgaggatggaggtcctctgtgatgagtgtccagctggt 672
|||||| |||| || |||||||| |||||||| | || |||| |||||||||||||
Sbjct: 123 ttcagtagaaatatcgttgctctaaggatggaaattctttgtgccaagtgtccagctggc 182
Query: 673 ggtgttggtgtttataacccaggtttttggggcatgaacatagaagatgggaaggcctac 732
||||||||| |||| |||||||| || |||||||||||||||||||| |||||| |||
Sbjct: 183 ggtgttggtatttacaacccaggattctggggcatgaacatagaagaagggaagagctat 242
Query: 733 aatctcgttatgtat 747
||||| || ||||||
Sbjct: 243 aatctggtaatgtat 257
Score = 87.7 bits (44), Expect = 8e-016
Identities = 152/188 (80%)
Strand = Plus / Plus
Query: 943 gatcaagtatcactcatgcctgaagacacatacaagggacatggtttccgcacagaactt 1002
|||||||| |||||||| ||| ||| ||||||||||| ||||| || |||| |||||
Sbjct: 453 gatcaagtgtcactcataccttcagatacatacaagggccatggctttcgcaaggaactc 512
Query: 1003 atatccatgcttttggatttgaaaccacgattcttgagatttcctggaggttgttttgta 1062
||| ||||||| |||| || | |||||| ||| | |||||||||| ||| |||||
Sbjct: 513 atacacatgcttatggacttaagaccacggttccttcgatttcctggtggtacctttgtt 572
Query: 1063 gaaggtgactggctaagaaatgcattcagatggagagaatcaattggtccatgggaagag 1122
||||| | | | |||||||||| ||||||||||| ||| | || |||||||||||||||
Sbjct: 573 gaagggaatttgttaagaaatgctttcagatggagggaaactatcggtccatgggaagag 632
Query: 1123 aggcctgg 1130
||||||||
Sbjct: 633 aggcctgg 640
>gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16J20
5-PRIME, mRNA sequence
Length = 372
Score = 135 bits (68), Expect = 4e-030
Identities = 221/273 (80%)
Strand = Plus / Plus
Query: 454 gaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaacagaggt 513
||||| |||||||| || ||||||||||| ||||||| |||||||||||||||| ||||
Sbjct: 98 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 157
Query: 514 ttcgaagctggaggctctcatactccatcaaacatcgacccgtggtccatcattggagat 573
|| ||||| ||||| || | ||||| |||||||| || || ||||| |||||||| ||
Sbjct: 158 tttgaagccggagggcctgacactccttcaaacatagatccatggtctatcattggtgac 217
Query: 574 gactcctccgtgtttgtggcgactgatcgtacatcatgtttcagtcgaaacattgttgct 633
|| |||||| | | ||| |||||| | ||||| | |||| |||| || ||||||
Sbjct: 218 gaatcctccatatacgtgaagactgaaagaacatctngnngcagtagaaatatcgttgct 277
Query: 634 ctgaggatggaggtcctctgtgatgagtgtccagctggtggtgttggtgtttataaccca 693
|| |||||||| | || |||| ||||||||||||| ||||||||| |||| ||||||
Sbjct: 278 ctaaggatggaaattctttgtgccaagtgtccagctggcggtgttggtatttacaaccca 337
Query: 694 ggtttttggggcatgaacatagaagatgggaag 726
|| || |||||||||||||||||||| ||||||
Sbjct: 338 ggattctggggcatgaacatagaagaagggaag 370
>gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P04
5-PRIME, mRNA sequence
Length = 379
Score = 127 bits (64), Expect = 9e-028
Identities = 209/256 (81%), Gaps = 1/256 (0%)
Strand = Plus / Plus
Query: 493 gagcttgtcagtaacagaggtttcgaagctggaggctct-catactccatcaaacatcga 551
|||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||| ||
Sbjct: 3 gagcttgtcagtaacaaaggttttgaagccggagggcctncacactccttcaaacataga 62
Query: 552 cccgtggtccatcattggagatgactcctccgtgtttgtggcgactgatcgtacatcatg 611
|| ||||| |||||||| || || |||||| | | ||| |||||| | ||||| ||
Sbjct: 63 tccatggtctatcattggtgacgaatcctccatatacgtgaagactgaaagaacatcttg 122
Query: 612 tttcagtcgaaacattgttgctctgaggatggaggtcctctgtgatgagtgtccagctgg 671
||||||| |||| || |||||||| |||||||| | || |||| |||||||||||||
Sbjct: 123 tttcagtagaaatatcgttgctctaaggatggaaattctttgtgccaagtgtccagctgg 182
Query: 672 tggtgttggtgtttataacccaggtttttggggcatgaacatagaagatgggaaggccta 731
||||||||| |||| |||||||| || |||||||||||||||||||| |||||| |||
Sbjct: 183 cggtgttggtatttacaacccaggattctggggcatgaacatagaagaagggaagagcta 242
Query: 732 caatctcgttatgtat 747
||||| || ||||||
Sbjct: 243 taatctggtaatgtat 258
>gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 5', mRNA sequence
Length = 270
Score = 125 bits (63), Expect = 4e-027
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 386 ccctcaaggttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttggga 445
||||||||||||||||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct: 178 ccctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggga 237
Query: 446 tattttttgaggagatcaaccatgcaggagc 476
| |||||||||||||||||||||||||||||
Sbjct: 238 tgttttttgaggagatcaaccatgcaggagc 268
>gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P16
3-PRIME, mRNA sequence
Length = 601
Score = 121 bits (61), Expect = 6e-026
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 394 gttgatgcctcgccacagcttgcccggaagatccctgaaacactgtttgggatatttttt 453
|||||| |||| || || ||||| || ||||||||||| || |||||||| ||||| |||
Sbjct: 486 gttgattcctcaccgcaccttgctcgaaagatccctgatacgctgtttggaatattcttt 545
Query: 454 gaggagatcaaccatgcaggagctggtggcatatgggcagagcttgtcagtaa 506
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 546 gaggagatcaaccatgcaggagctggtggaatatgggcagaacttgttagtaa 598
>gb|AL450866.1|AL450866 AL450866 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04K11u 5', mRNA sequence
Length = 494
Score = 117 bits (59), Expect = 9e-025
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1118 aagagaggcctggacacttcggggatgtttggcattactggactgatgatgggcttggat 1177
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 aagagaggcctggacacttcggagatgtttggcattactggactgacgatggccttggat 60
Query: 1178 attatgagttccttc 1192
|||||||||| ||||
Sbjct: 61 attatgagtttcttc 75
>gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I02
5-PRIME, mRNA sequence
Length = 463
Score = 117 bits (59), Expect = 9e-025
Identities = 182/223 (81%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 241 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 300
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 301 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 360
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctccgtgtttgtggcgactgat 600
|||||||| || || ||||| |||||||| || || |||||| | | ||| ||||||
Sbjct: 361 tcaaacatagatccatggtctatcattggtgacgaatcctccatatacgtgaagactgaa 420
Query: 601 cgtacatcatgtttcagtcgaaacattgttgctctgaggatgg 643
| ||||| ||||||||| |||| || |||||||| |||||||
Sbjct: 421 agaacatcttgtttcagtagaaatatcgttgctctaaggatgg 463
>gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G12f, mRNA sequence
Length = 489
Score = 111 bits (56), Expect = 5e-023
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 231 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 290
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 291 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 350
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctccgtgtttgtggcgactgat 600
|||||||| || || ||||| |||||||| || || |||||| | | ||| ||||||
Sbjct: 351 tcaaacatagatccatggtctatcattggtgacgaatcctccatatacgtgaagactgaa 410
Query: 601 cgtacatcatgtttcagtcgaaacattgttgctctgaggatgga 644
| ||||| ||||||||| |||| || |||||||| | ||||||
Sbjct: 411 agaacatcttgtttcagtagaaatatcgttgctctaacgatgga 454
>gb|BQ460354.1|BQ460354 HA09O20r HA Hordeum vulgare subsp. vulgare cDNA clone HA09O20
5-PRIME, mRNA sequence
Length = 553
Score = 109 bits (55), Expect = 2e-022
Identities = 196/243 (80%)
Strand = Plus / Plus
Query: 943 gatcaagtatcactcatgcctgaagacacatacaagggacatggtttccgcacagaactt 1002
|||||||| |||||||| ||| ||| ||||||||||| ||||| || |||| |||||
Sbjct: 210 gatcaagtgtcactcataccttcagatacatacaagggccatggctttcgcaaggaactc 269
Query: 1003 atatccatgcttttggatttgaaaccacgattcttgagatttcctggaggttgttttgta 1062
||| ||||||| |||| || | |||||| ||| | |||||||||| ||| |||||
Sbjct: 270 atacacatgcttatggacttaagaccacggttccttcgatttcctggtggtacctttgtt 329
Query: 1063 gaaggtgactggctaagaaatgcattcagatggagagaatcaattggtccatgggaagag 1122
||||| | | | |||||||||| ||||||||||| ||| | || |||||||||||||||
Sbjct: 330 gaagggaatttgttaagaaatgctttcagatggagggaaactatcggtccatgggaagag 389
Query: 1123 aggcctggacacttcggggatgtttggcattactggactgatgatgggcttggatattat 1182
|||||||| |||| || || || ||| | |||||||| |||||||| ||||| ||||||
Sbjct: 390 aggcctggtcactatggagacgtctggaactactggacagatgatggtcttgggtattat 449
Query: 1183 gag 1185
|||
Sbjct: 450 gag 452
>gb|BU967351.1|BU967351 HB04A14r BC Hordeum vulgare subsp. vulgare cDNA clone HB04A14
5-PRIME, mRNA sequence
Length = 667
Score = 109 bits (55), Expect = 2e-022
Identities = 196/243 (80%)
Strand = Plus / Plus
Query: 943 gatcaagtatcactcatgcctgaagacacatacaagggacatggtttccgcacagaactt 1002
|||||||| |||||||| ||| ||| ||||||||||| ||||| || |||| |||||
Sbjct: 86 gatcaagtgtcactcataccttcagatacatacaagggccatggctttcgcaaggaactc 145
Query: 1003 atatccatgcttttggatttgaaaccacgattcttgagatttcctggaggttgttttgta 1062
||| ||||||| |||| || | |||||| ||| | |||||||||| ||| |||||
Sbjct: 146 atacacatgcttatggacttaagaccacggttccttcgatttcctggtggtacctttgtt 205
Query: 1063 gaaggtgactggctaagaaatgcattcagatggagagaatcaattggtccatgggaagag 1122
||||| | | | |||||||||| ||||||||||| ||| | || |||||||||||||||
Sbjct: 206 gaagggaatttgttaagaaatgctttcagatggagggaaactatcggtccatgggaagag 265
Query: 1123 aggcctggacacttcggggatgtttggcattactggactgatgatgggcttggatattat 1182
|||||||| |||| || || || ||| | |||||||| |||||||| ||||| ||||||
Sbjct: 266 aggcctggtcactatggagacgtctggaactactggacagatgatggtcttgggtattat 325
Query: 1183 gag 1185
|||
Sbjct: 326 gag 328
>gb|BU983820.1|BU983820 HA31C09r HA Hordeum vulgare subsp. vulgare cDNA clone HA31C09
5-PRIME, mRNA sequence
Length = 654
Score = 109 bits (55), Expect = 2e-022
Identities = 196/243 (80%)
Strand = Plus / Plus
Query: 943 gatcaagtatcactcatgcctgaagacacatacaagggacatggtttccgcacagaactt 1002
|||||||| |||||||| ||| ||| ||||||||||| ||||| || |||| |||||
Sbjct: 218 gatcaagtgtcactcataccttcagatacatacaagggccatggctttcgcaaggaactc 277
Query: 1003 atatccatgcttttggatttgaaaccacgattcttgagatttcctggaggttgttttgta 1062
||| ||||||| |||| || | |||||| ||| | |||||||||| ||| |||||
Sbjct: 278 atacacatgcttatggacttaagaccacggttccttcgatttcctggtggtacctttgtt 337
Query: 1063 gaaggtgactggctaagaaatgcattcagatggagagaatcaattggtccatgggaagag 1122
||||| | | | |||||||||| ||||||||||| ||| | || |||||||||||||||
Sbjct: 338 gaagggaatttgttaagaaatgctttcagatggagggaaactatcggtccatgggaagag 397
Query: 1123 aggcctggacacttcggggatgtttggcattactggactgatgatgggcttggatattat 1182
|||||||| |||| || || || ||| | |||||||| |||||||| ||||| ||||||
Sbjct: 398 aggcctggtcactatggagacgtctggaactactggacagatgatggtcttgggtattat 457
Query: 1183 gag 1185
|||
Sbjct: 458 gag 460
>gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G12f, mRNA sequence
Length = 417
Score = 107 bits (54), Expect = 8e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 231 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 290
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 291 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 350
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctcc 582
|||||||| || || ||||| |||||||| || || ||||||
Sbjct: 351 tcaaacatagatccatggtctatcattggtgacgaatcctcc 392
>gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J20
5-PRIME, mRNA sequence
Length = 416
Score = 107 bits (54), Expect = 8e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 232 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 291
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 292 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 351
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctcc 582
|||||||| || || ||||| |||||||| || || ||||||
Sbjct: 352 tcaaacatagatccatggtctatcattggtgacgaatcctcc 393
>gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H21
5-PRIME, mRNA sequence
Length = 428
Score = 107 bits (54), Expect = 8e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 251 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 310
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 311 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 370
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctcc 582
|||||||| || || ||||| |||||||| || || ||||||
Sbjct: 371 tcaaacatagatccatggtctatcattggtgacgaatcctcc 412
>gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50J14
5-PRIME, mRNA sequence
Length = 417
Score = 107 bits (54), Expect = 8e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 228 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 287
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 288 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 347
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctcc 582
|||||||| || || ||||| |||||||| || || ||||||
Sbjct: 348 tcaaacatagatccatggtctatcattggtgacgaatcctcc 389
>gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O15
5-PRIME, mRNA sequence
Length = 438
Score = 107 bits (54), Expect = 8e-022
Identities = 135/162 (83%)
Strand = Plus / Plus
Query: 421 aagatccctgaaacactgtttgggatattttttgaggagatcaaccatgcaggagctggt 480
||||||||| |||| || ||||| | || |||||||| |||||||| || |||||||||
Sbjct: 248 aagatccctcaaaccctctttggcttgttctttgaggaaatcaaccacgctggagctggt 307
Query: 481 ggcatatgggcagagcttgtcagtaacagaggtttcgaagctggaggctctcatactcca 540
|| ||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||
Sbjct: 308 ggattatgggcggagcttgtcagtaacaaaggttttgaagccggagggcctcacactcct 367
Query: 541 tcaaacatcgacccgtggtccatcattggagatgactcctcc 582
|||||||| || || ||||| |||||||| || || ||||||
Sbjct: 368 tcaaacatagatccatggtctatcattggtgacgaatcctcc 409
>gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_B24 5', mRNA sequence
Length = 223
Score = 103 bits (52), Expect = 1e-020
Identities = 121/144 (84%)
Strand = Plus / Plus
Query: 604 acatcatgtttcagtcgaaacattgttgctctgaggatggaggtcctctgtgatgagtgt 663
||||| ||||||||| |||| || |||||||| |||||||| | || |||| |||||
Sbjct: 69 acatcttgtttcagtagaaatatcgttgctctaaggatggaaattctttgtgccaagtgt 128
Query: 664 ccagctggtggtgttggtgtttataacccaggtttttggggcatgaacatagaagatggg 723
|||||||| ||||||||| |||| |||||||| || |||||||||||||||||||| |||
Sbjct: 129 ccagctggcggtgttggtatttacaacccaggattctggggcatgaacatagaagaaggg 188
Query: 724 aaggcctacaatctcgttatgtat 747
||| ||| ||||| || ||||||
Sbjct: 189 aagagctataatctggtaatgtat 212
>gb|AL508926.1|AL508926 AL508926 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10D08V 5',
mRNA sequence
Length = 700
Score = 85.7 bits (43), Expect = 3e-015
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 1076 taagaaatgcattcagatggagagaatcaattggtccatgggaagagaggcctggacact 1135
|||||||||| ||||||||| | ||| | || ||||||||||||||||||||||| ||||
Sbjct: 44 taagaaatgctttcagatggngggaaactatcggtccatgggaagagaggcctggtcact 103
Query: 1136 tcggggatgtttggcattactggactgatgatgggcttggatattatgag 1185
|| || || ||| | |||||||| |||||||| ||||| |||||||||
Sbjct: 104 atggagacgtctggaactactggacagatgatggtcttgggtattatgag 153
>gb|BQ460225.1|BQ460225 HA06N22r HA Hordeum vulgare subsp. vulgare cDNA clone HA06N22
5-PRIME, mRNA sequence
Length = 644
Score = 77.8 bits (39), Expect = 8e-013
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1087 ttcagatggagagaatcaattggtccatgggaagagaggcctggacacttcggggatgtt 1146
||||||||||| ||| | || ||||||||||||||||||||||| |||| || || ||
Sbjct: 4 ttcagatggagggaaactatcggtccatgggaagagaggcctggtcactatggagacgtc 63
Query: 1147 tggcattactggactgatgatgggcttggatattatgag 1185
||| | |||||||| |||||||| ||||| |||||||||
Sbjct: 64 tggaactactggacagatgatggtcttgggtattatgag 102
>gb|BQ469584.1|BQ469584 HZ01D22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01D22
5-PRIME, mRNA sequence
Length = 584
Score = 67.9 bits (34), Expect = 7e-010
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 1108 ggtccatgggaagagaggcctggacacttcggggatgtttggcattactggactgatgat 1167
||||||||||||||||||||||| |||| || || || ||| | |||||||| ||||||
Sbjct: 18 ggtccatgggaagagaggcctggtcactatggagacgtctggaactactggacagatgat 77
Query: 1168 gggcttggatattatgag 1185
|| ||||| |||||||||
Sbjct: 78 ggtcttgggtattatgag 95
>gb|AV836294.1|AV836294 AV836294 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd3o13, mRNA sequence
Length = 549
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1153 tactggactgatgatgggcttggatattatgagttccttc 1192
||||||||||||||||| ||||||| | |||||||||||
Sbjct: 263 tactggactgatgatggacttggattctttgagttccttc 302
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 934 gtttggcttgatcaagtatcactcatgcc 962
|||||| |||||||||||||||| |||||
Sbjct: 44 gtttggtttgatcaagtatcacttatgcc 72
>gb|BU990075.1|BU990075 HF23P24r HF Hordeum vulgare subsp. vulgare cDNA clone HF23P24
5-PRIME, mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1153 tactggactgatgatgggcttggatattatgagttccttc 1192
||||||||||||||||| ||||||| | |||||||||||
Sbjct: 187 tactggactgatgatggacttggattctttgagttccttc 226
>gb|CA014049.1|CA014049 HT10D23r HT Hordeum vulgare subsp. vulgare cDNA clone HT10D23
5-PRIME, mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1153 tactggactgatgatgggcttggatattatgagttccttc 1192
||||||||||||||||| ||||||| | |||||||||||
Sbjct: 277 tactggactgatgatggacttggattctttgagttccttc 316
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,430
Number of Sequences: 312970
Number of extensions: 122430
Number of successful extensions: 34238
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34178
Number of HSP's gapped (non-prelim): 45
length of query: 1192
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1173
effective length of database: 169,188,109
effective search space: 198457651857
effective search space used: 198457651857
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)