BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI957636.1|BI957636 HVSMEn0010H09f Hordeum vulgare rachi... 428 e-118
gb|BI959468.1|BI959468 HVSMEn0019M15f Hordeum vulgare rachi... 420 e-116
gb|AV925745.1|AV925745 AV925745 K. Sato unpublished cDNA li... 420 e-116
emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenyl... 420 e-116
gb|BM816192.1|BM816192 HC110D06_T3.ab1 HC Hordeum vulgare s... 416 e-115
gb|BI960030.1|BI960030 HVSMEn0022P01f Hordeum vulgare rachi... 406 e-112
gb|AV926974.1|AV926974 AV926974 K. Sato unpublished cDNA li... 406 e-112
gb|BI958535.1|BI958535 HVSMEn0015H19f Hordeum vulgare rachi... 404 e-111
gb|AL504786.1|AL504786 AL504786 Hordeum vulgare Barke roots... 396 e-109
gb|BI959619.1|BI959619 HVSMEn0020H03f Hordeum vulgare rachi... 392 e-107
gb|BM372206.2|BM372206 EBro03_SQ004_F04_R root, 3 week, wat... 389 e-106
gb|AV926549.1|AV926549 AV926549 K. Sato unpublished cDNA li... 371 e-101
gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA li... 371 e-101
gb|BI957512.1|BI957512 HVSMEn0009P04f Hordeum vulgare rachi... 369 e-100
gb|AV926550.1|AV926550 AV926550 K. Sato unpublished cDNA li... 357 5e-097
gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedl... 355 2e-096
gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare s... 339 1e-091
gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots... 331 3e-089
gb|BE214612.2|BE214612 HV_CEb0003P13f Hordeum vulgare seedl... 325 2e-087
gb|BI959811.1|BI959811 HVSMEn0021K21f Hordeum vulgare rachi... 323 8e-087
gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA li... 319 1e-085
gb|BI958293.1|BI958293 HVSMEn0014E11f Hordeum vulgare rachi... 317 5e-085
gb|BI959927.1|BI959927 HVSMEn0022G20f Hordeum vulgare rachi... 317 5e-085
gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachi... 311 3e-083
gb|AV923115.1|AV923115 AV923115 K. Sato unpublished cDNA li... 309 1e-082
gb|BU988288.1|BU988288 HF17D09r HF Hordeum vulgare subsp. v... 307 5e-082
gb|AV926724.1|AV926724 AV926724 K. Sato unpublished cDNA li... 287 4e-076
gb|BI960417.1|BI960417 HVSMEn0024I12f Hordeum vulgare rachi... 264 6e-069
gb|AL505744.1|AL505744 AL505744 Hordeum vulgare Barke roots... 254 6e-066
gb|AV925746.1|AV925746 AV925746 K. Sato unpublished cDNA li... 246 1e-063
gb|BF624772.2|BF624772 HVSMEa0017L07f Hordeum vulgare seedl... 242 2e-062
gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedl... 242 2e-062
gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachi... 242 2e-062
gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA li... 242 2e-062
gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA li... 242 2e-062
gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA li... 242 2e-062
gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA li... 242 2e-062
gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA li... 242 2e-062
gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA li... 242 2e-062
gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA li... 242 2e-062
gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, wat... 242 2e-062
gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, wat... 242 2e-062
gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. v... 242 2e-062
gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA li... 236 1e-060
gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA li... 236 1e-060
gb|BI778012.2|BI778012 EBro07_SQ001_N12_R root, 3 week, red... 236 1e-060
gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DA... 226 1e-057
gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots... 220 8e-056
gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Li... 218 3e-055
gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots... 218 3e-055
gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots... 218 3e-055
gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots... 218 3e-055
gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots... 218 3e-055
gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots... 218 3e-055
gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa... 218 3e-055
gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachi... 218 3e-055
gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedl... 218 3e-055
gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA li... 218 3e-055
gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA li... 218 3e-055
gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA li... 218 3e-055
gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA li... 218 3e-055
gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. v... 218 3e-055
gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. v... 218 3e-055
gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, wat... 218 3e-055
gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA li... 214 5e-054
gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachi... 204 5e-051
gb|BI957150.1|BI957150 HVSMEn0007M14f Hordeum vulgare rachi... 202 2e-050
gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. v... 196 1e-048
gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachi... 194 5e-048
gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachi... 194 5e-048
gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedl... 194 5e-048
gb|CK122468.1|CK122468 BES1824103j12 BES1824 Hordeum vulgar... 194 5e-048
gb|BF260697.2|BF260697 HVSMEf0022L07f Hordeum vulgare seedl... 192 2e-047
gb|BI779552.2|BI779552 EBro01_SQ004_G11_R root, 3 week, hyd... 188 3e-046
gb|BU996801.1|BU996801 HM14M22r HM Hordeum vulgare subsp. v... 188 3e-046
gb|BI959668.1|BI959668 HVSMEn0020K24f Hordeum vulgare rachi... 186 1e-045
gb|BF628845.2|BF628845 HVSMEb0008N10f Hordeum vulgare seedl... 182 2e-044
gb|BU973291.1|BU973291 HB24G20r BC Hordeum vulgare subsp. v... 176 1e-042
gb|AV923557.1|AV923557 AV923557 K. Sato unpublished cDNA li... 167 1e-039
gb|AV913531.1|AV913531 AV913531 K. Sato unpublished cDNA li... 165 4e-039
gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots... 163 2e-038
gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots... 161 7e-038
gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachi... 159 3e-037
gb|CA021868.1|CA021868 HZ41G07r HZ Hordeum vulgare subsp. v... 157 1e-036
gb|BI958448.1|BI958448 HVSMEn0015A23f Hordeum vulgare rachi... 155 4e-036
gb|BI958633.1|BI958633 HVSMEn0016A07f Hordeum vulgare rachi... 155 4e-036
gb|BG369913.2|BG369913 HVSMEi0026I13f Hordeum vulgare 20 DA... 155 4e-036
gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots... 151 6e-035
gb|BQ761712.1|BQ761712 EBem10_SQ001_J18_R embryo, 2 Day ger... 151 6e-035
gb|AL503572.1|AL503572 AL503572 Hordeum vulgare Barke roots... 147 1e-033
gb|BM442994.2|BM442994 EBro02_SQ002_C04_R root, 3 week, hyd... 141 6e-032
gb|AV913713.1|AV913713 AV913713 K. Sato unpublished cDNA li... 135 4e-030
gb|BI959804.1|BI959804 HVSMEn0021K01f Hordeum vulgare rachi... 133 1e-029
gb|AL502555.1|AL502555 AL502555 Hordeum vulgare Barke roots... 131 6e-029
gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots... 131 6e-029
gb|BF254075.2|BF254075 HVSMEf0002P06f Hordeum vulgare seedl... 131 6e-029
gb|BG415885.2|BG415885 HVSMEk0008K04f Hordeum vulgare testa... 131 6e-029
gb|BF254228.2|BF254228 HVSMEf0003G02f Hordeum vulgare seedl... 129 2e-028
gb|AL505894.1|AL505894 AL505894 Hordeum vulgare Barke roots... 127 9e-028
gb|BI953765.1|BI953765 HVSMEm0014E15f Hordeum vulgare green... 127 9e-028
gb|BI960176.1|BI960176 HVSMEn0023I19f Hordeum vulgare rachi... 127 9e-028
gb|BM442943.2|BM442943 EBro02_SQ001_P13_R root, 3 week, hyd... 127 9e-028
gb|BQ762501.1|BQ762501 EBro02_SQ004_F04 _R root, 3 week, hy... 125 4e-027
gb|BQ766648.1|BQ766648 EBro08_SQ006_A20_R root, 3 week, dro... 125 4e-027
gb|BQ767318.1|BQ767318 EBro08_SQ008_F18_R root, 3 week, dro... 125 4e-027
gb|AV913368.1|AV913368 AV913368 K. Sato unpublished cDNA li... 119 2e-025
gb|BU994828.1|BU994828 HM08F11r HM Hordeum vulgare subsp. v... 117 9e-025
gb|BM372113.2|BM372113 EBro03_SQ004_B02_R root, 3 week, wat... 115 3e-024
gb|BU983875.1|BU983875 HA31E23r HA Hordeum vulgare subsp. v... 113 1e-023
gb|BI959878.1|BI959878 HVSMEn0022D03f Hordeum vulgare rachi... 111 5e-023
gb|BJ451668.1|BJ451668 BJ451668 K. Sato unpublished cDNA li... 111 5e-023
gb|BM100085.2|BM100085 EBma01_SQ001_C10_R maternal, 4 DPA, ... 111 5e-023
gb|CA027255.1|CA027255 HZ58F14r HZ Hordeum vulgare subsp. v... 109 2e-022
gb|BF254448.3|BF254448 HVSMEf0004A20f Hordeum vulgare seedl... 103 1e-020
gb|BI958878.1|BI958878 HVSMEn0016P19f Hordeum vulgare rachi... 100 2e-019
gb|BU980765.1|BU980765 HA21K02r HA Hordeum vulgare subsp. v... 100 2e-019
gb|BG418734.1|BG418734 HVSMEk0024D11f Hordeum vulgare testa... 94 1e-017
gb|BQ471843.1|BQ471843 HV03K13r HV Hordeum vulgare subsp. v... 90 2e-016
gb|BI778700.2|BI778700 EBro01_SQ001_C06_R root, 3 week, hyd... 90 2e-016
gb|BQ763018.1|BQ763018 EBro02_SQ006_L19_R root, 3 week, hyd... 88 8e-016
emb|Z49145.1|HVPAL2MR H.vulgare partial PAL mRNA for phenyl... 88 8e-016
gb|CB881918.1|CB881918 HM11E17w HM Hordeum vulgare subsp. v... 86 3e-015
gb|BF259309.2|BF259309 HVSMEf0018P05f Hordeum vulgare seedl... 84 1e-014
gb|BE215152.2|BE215152 HV_CEb0006A03f Hordeum vulgare seedl... 84 1e-014
gb|BM443210.2|BM443210 EBro02_SQ003_B08_R root, 3 week, hyd... 84 1e-014
gb|BQ765736.1|BQ765736 EBro03_SQ008_D02_R root, 3 week, wat... 84 1e-014
gb|AL501343.1|AL501343 AL501343 Hordeum vulgare Barke roots... 82 5e-014
gb|BJ467713.1|BJ467713 BJ467713 K. Sato unpublished cDNA li... 82 5e-014
gb|BM368745.2|BM368745 EBem08_SQ004_H21_R embryo, 40 DPA, n... 82 5e-014
gb|BI959412.1|BI959412 HVSMEn0019J04f Hordeum vulgare rachi... 78 8e-013
gb|CB882049.1|CB882049 HM11L11w HM Hordeum vulgare subsp. v... 78 8e-013
gb|BI957141.1|BI957141 HVSMEn0007L14f Hordeum vulgare rachi... 76 3e-012
gb|BI957856.1|BI957856 HVSMEn0011M08f Hordeum vulgare rachi... 76 3e-012
gb|BG343667.2|BG343667 HVSMEg0006C21f Hordeum vulgare pre-a... 76 3e-012
gb|BF265906.3|BF265906 HV_CEa0013K09f Hordeum vulgare seedl... 76 3e-012
gb|BI950187.1|BI950187 HVSMEl0019G14f Hordeum vulgare spike... 74 1e-011
gb|BI958009.1|BI958009 HVSMEn0012N24f Hordeum vulgare rachi... 74 1e-011
gb|BG414724.1|BG414724 HVSMEk0003I17f Hordeum vulgare testa... 74 1e-011
gb|AL504668.1|AL504668 AL504668 Hordeum vulgare Barke roots... 70 2e-010
gb|BF255291.2|BF255291 HVSMEf0006H12f Hordeum vulgare seedl... 70 2e-010
gb|AJ427587.1|AJ427587 AJ427587 Hordeum vulgare subsp. vulg... 70 2e-010
gb|BG310118.1|BG310118 HVSMEc0016N14f Hordeum vulgare seedl... 68 7e-010
gb|BU989823.1|BU989823 HF22M18r HF Hordeum vulgare subsp. v... 68 7e-010
gb|BU990169.1|BU990169 HF24E14r HF Hordeum vulgare subsp. v... 68 7e-010
gb|BU990224.1|BU990224 HF24H03r HF Hordeum vulgare subsp. v... 68 7e-010
gb|BI957072.1|BI957072 HVSMEn0007E12f Hordeum vulgare rachi... 66 3e-009
gb|BQ768383.1|BQ768383 EBro08_SQ011_F13_R root, 3 week, dro... 64 1e-008
gb|AV923897.1|AV923897 AV923897 K. Sato unpublished cDNA li... 62 4e-008
gb|AJ428920.1|AJ428920 AJ428920 Hordeum vulgare subsp. vulg... 60 2e-007
emb|X97313.1|HVPALGENE H.vulgare pal gene 60 2e-007
gb|BE214036.1|BE214036 HV_CEb0001P14f Hordeum vulgare seedl... 58 7e-007
gb|BI959268.1|BI959268 HVSMEn0019A02f Hordeum vulgare rachi... 56 3e-006
gb|AV914003.1|AV914003 AV914003 K. Sato unpublished cDNA li... 56 3e-006
gb|AV923901.1|AV923901 AV923901 K. Sato unpublished cDNA li... 54 1e-005
gb|BJ464216.1|BJ464216 BJ464216 K. Sato unpublished cDNA li... 54 1e-005
gb|BJ464895.1|BJ464895 BJ464895 K. Sato unpublished cDNA li... 54 1e-005
gb|AV928881.1|AV928881 AV928881 K. Sato unpublished cDNA li... 52 4e-005
gb|BM443270.1|BM443270 EBro02_SQ003_F17_R root, 3 week, hyd... 50 2e-004
gb|BQ767013.1|BQ767013 EBro08_SQ007_A24_R root, 3 week, dro... 50 2e-004
gb|BF254022.2|BF254022 HVSMEf0002M12f Hordeum vulgare seedl... 48 7e-004
gb|BI958670.1|BI958670 HVSMEn0016C06f Hordeum vulgare rachi... 48 7e-004
gb|BF264601.3|BF264601 HV_CEa0009N21f Hordeum vulgare seedl... 48 7e-004
emb|Z49147.1|HVPAL7RM H.vulgare partial PAL mRNA for phenyl... 48 7e-004
gb|AL500991.1|AL500991 AL500991 Hordeum vulgare Barke roots... 46 0.003
gb|AL501962.1|AL501962 AL501962 Hordeum vulgare Barke roots... 46 0.003
gb|AL503163.1|AL503163 AL503163 Hordeum vulgare Barke roots... 46 0.003
gb|BI955715.1|BI955715 HVSMEm0024C22f Hordeum vulgare green... 46 0.003
gb|BI958930.1|BI958930 HVSMEn0017E12f Hordeum vulgare rachi... 46 0.003
gb|AV918830.1|AV918830 AV918830 K. Sato unpublished cDNA li... 46 0.003
gb|BQ662656.1|BQ662656 HS03H24u HS Hordeum vulgare subsp. v... 46 0.003
gb|BI777236.2|BI777236 EBro03_SQ002_I15_R root, 3 week, wat... 46 0.003
gb|BQ756566.1|BQ756566 EBem09_SQ003_B12_R embryo, 1 Day ger... 46 0.003
gb|BQ760542.1|BQ760542 EBro03_SQ001_F05_R root, 3 week, wat... 46 0.003
gb|BQ768801.1|BQ768801 EBro08_SQ012_P15_R root, 3 week, dro... 46 0.003
gb|CB858981.1|CB858981 HI08O15w HI Hordeum vulgare subsp. v... 46 0.003
gb|BI947758.1|BI947758 HVSMEl0006M12f Hordeum vulgare spike... 44 0.011
gb|AV914027.1|AV914027 AV914027 K. Sato unpublished cDNA li... 44 0.011
gb|AV921319.1|AV921319 AV921319 K. Sato unpublished cDNA li... 44 0.011
gb|BJ468382.1|BJ468382 BJ468382 K. Sato unpublished cDNA li... 44 0.011
gb|BM443256.2|BM443256 EBro02_SQ003_E13_R root, 3 week, hyd... 42 0.042
gb|AL505349.1|AL505349 AL505349 Hordeum vulgare Barke roots... 40 0.16
gb|BM370557.2|BM370557 EBro08_SQ004_J10_R root, 3 week, dro... 40 0.16
gb|BQ765396.1|BQ765396 EBro03_SQ007_E05_R root, 3 week, wat... 40 0.16
>gb|BI957636.1|BI957636 HVSMEn0010H09f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010H09f,
mRNA sequence
Length = 637
Score = 428 bits (216), Expect = e-118
Identities = 436/504 (86%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| |||||||||||| || | || |||||
Sbjct: 571 agggcgtggtccacgagcacggcgcgcagtttctgcatcagtgggtagttggcgctgcat 512
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 511 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 452
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 451 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 392
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 391 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 332
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 331 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 272
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 271 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 214
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 213 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 155
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 154 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 96
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 95 caggttggaggtcagcccgttgtt 72
>gb|BI959468.1|BI959468 HVSMEn0019M15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019M15f,
mRNA sequence
Length = 653
Score = 420 bits (212), Expect = e-116
Identities = 435/504 (86%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 557 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 498
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 497 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 438
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 437 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 378
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 377 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 318
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 317 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 258
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 257 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 200
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 199 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 141
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 140 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 82
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 81 caggttggaggtcagcccgttgtt 58
>gb|AV925745.1|AV925745 AV925745 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd25k05 5', mRNA sequence
Length = 671
Score = 420 bits (212), Expect = e-116
Identities = 435/504 (86%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 668 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 609
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 608 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 549
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 548 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 489
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 488 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 429
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 428 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 369
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 368 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 311
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 310 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 252
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 251 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 193
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 192 caggttggaggtcagcccgttgtt 169
>emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1831 bp)
Length = 1831
Score = 420 bits (212), Expect = e-116
Identities = 435/504 (86%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 1147 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 1088
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 1087 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 1028
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 1027 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 968
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 967 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 908
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 907 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 848
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 847 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 790
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 789 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 731
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 730 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 672
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 671 caggttggaggtcagcccgttgtt 648
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 1490 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 1431
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 1430 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 1371
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1370 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 1311
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 1310 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 1251
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 1250 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 1191
Query: 658 gaacac 663
||||||
Sbjct: 1190 gaacac 1185
>gb|BM816192.1|BM816192 HC110D06_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110D06_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Histidine ammonia-lyase,Phenylalanine
ammonia-lyase,, mRNA sequence
Length = 904
Score = 416 bits (210), Expect = e-115
Identities = 433/502 (86%), Gaps = 5/502 (0%)
Strand = Plus / Minus
Query: 697 ggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggccgc 756
|||||||||||| ||||||||||||| ||||||||||| || | || ||||| |
Sbjct: 752 ggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcatgg 693
Query: 757 gtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcgct 816
||| || ||||| |||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 692 gtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcgct 633
Query: 817 gaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacctg 876
|||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||||
Sbjct: 632 gaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacctg 573
Query: 877 ggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggc 936
|||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |||
Sbjct: 572 cgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatggc 513
Query: 937 ctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggc 996
||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||||
Sbjct: 512 ctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcggc 453
Query: 997 ggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcg 1056
||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 452 ggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccgca 395
Query: 1057 ctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggaggc 1116
||||| || | ||||||| | ||| || | | |||||||||||| ||||||||||| ||
Sbjct: 394 ctctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaagc 336
Query: 1117 catggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggcca 1175
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 335 catggcgatctcggtg-cccttgaagccgtagtccaggctggggttgcggctgcctgcca 277
Query: 1176 ggtttgaggtgagcccgttgtt 1197
|||| ||||| |||||||||||
Sbjct: 276 ggttggaggtcagcccgttgtt 255
>gb|BI960030.1|BI960030 HVSMEn0022P01f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022P01f,
mRNA sequence
Length = 628
Score = 406 bits (205), Expect = e-112
Identities = 408/471 (86%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 476 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 417
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 416 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 357
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 356 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 297
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 296 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 237
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 236 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 177
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 176 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 119
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 118 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 60
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgcg 1165
|||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 59 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcg 10
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 587 gccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctg 646
||||||||||||||||| | |||| | ||||| ||| || ||||||||||||||| ||
Sbjct: 590 gccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttg 531
Query: 647 gtgatcttggagaacac 663
||||||||||||||||
Sbjct: 530 ttgatcttggagaacac 514
>gb|AV926974.1|AV926974 AV926974 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26e13 5', mRNA sequence
Length = 556
Score = 406 bits (205), Expect = e-112
Identities = 408/471 (86%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 480 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 421
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 420 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 361
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 360 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 301
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 300 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 241
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 240 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 181
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 180 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 123
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 122 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 64
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgcg 1165
|||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 63 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcg 14
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 629 agctcctcctcgaacctggtgatcttggagaacac 663
||||||||||||||| || ||||||||||||||||
Sbjct: 552 agctcctcctcgaacttgttgatcttggagaacac 518
>gb|BI958535.1|BI958535 HVSMEn0015H19f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015H19f,
mRNA sequence
Length = 643
Score = 404 bits (204), Expect = e-111
Identities = 433/504 (85%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 578 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 519
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 518 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 459
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | || |
Sbjct: 458 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacaac 399
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 398 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 339
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 338 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 279
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 278 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 221
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| ||||||||| |
Sbjct: 220 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtagcaa 162
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 161 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 103
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 102 caggttggaggtcagcccgttgtt 79
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 636 cctcgaacctggtgatcttggagaacac 663
|||||||| || ||||||||||||||||
Sbjct: 643 cctcgaacttgttgatcttggagaacac 616
>gb|AL504786.1|AL504786 AL504786 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06G07V 5', mRNA sequence
Length = 700
Score = 396 bits (200), Expect = e-109
Identities = 375/428 (87%), Gaps = 5/428 (1%)
Strand = Plus / Minus
Query: 771 tgaacacggcctcgcggtcgatggcgctgatcagctccttctcgctgaagcgggcgctgg 830
|||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||
Sbjct: 639 tgaacacggcctcgcggtcgatggcggtgatgaggctcttctcgctgaagcgcgcgctgg 580
Query: 831 agagctcgcccgaggggttcatggtcagcaccttcttggccacctgggtcacggtgttct 890
|||| ||||| | ||||||||||||||||||||||| | |||||| |||||| |||||
Sbjct: 579 agaggtcgccggtagggttcatggtcagcaccttcttcgacacctgcgtcacgcagttct 520
Query: 891 tcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcacagcgcca 950
|||| || | ||||||||||||||| |||||||| ||||| | |||||||||||||||||
Sbjct: 519 tcacggaggtcttgatgttctcctcaaggtggcggaggtcgatggcctggcacagcgcca 460
Query: 951 cgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggcc 1010
| ||||| ||||| |||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct: 459 ccatgtatgtggaggacatgagcttcaggatgtccacagcctcggcggtcttcct-ggcc 401
Query: 1011 gagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgcacgtgggt 1070
||||||||||| || ||||||||||||||| |||||||||||||| ||||| || | |||
Sbjct: 400 gagacgaggccgagagagttcacgtcctgg-ttgtgctgctccgcactctggacat-ggt 343
Query: 1071 tggtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcgatctcgg 1130
|||| | ||| || | | |||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 342 tggtcaccgggttggcaaggtactggagctcagagcagtaggaagccatggcgatctcgg 283
Query: 1131 tgccccttgaagccgtagtccaggctggggttgc-gnngccggccaggtttgaggtgagc 1189
|| ||||||||||||||||||| ||||||||||| | ||| |||||||| ||||| |||
Sbjct: 282 tg-cccttgaagccgtagtccaagctggggttgcggctgcctgccaggttggaggtcagc 224
Query: 1190 ccgttgtt 1197
||||||||
Sbjct: 223 ccgttgtt 216
>gb|BI959619.1|BI959619 HVSMEn0020H03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020H03f,
mRNA sequence
Length = 616
Score = 392 bits (198), Expect = e-107
Identities = 406/471 (86%), Gaps = 5/471 (1%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 467 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 408
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 407 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 348
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 347 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 288
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 287 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 228
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 227 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 168
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 167 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 110
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 109 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 51
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgcg 1165
|||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 50 gccatggcgatctcggtg--ccttgaagccgtagtcccagctggggttgcg 2
Score = 60.0 bits (30), Expect = 2e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 587 gccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctg 646
||||||||| ||||||| | |||| | ||||| ||| || ||||||||||||||| ||
Sbjct: 581 gccacgcggncggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttg 522
Query: 647 gtgatcttggagaacac 663
||||||||||||||||
Sbjct: 521 ttgatcttggagaacac 505
>gb|BM372206.2|BM372206 EBro03_SQ004_F04_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_F04 5', mRNA sequence
Length = 477
Score = 389 bits (196), Expect = e-106
Identities = 396/458 (86%), Gaps = 4/458 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 454 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 395
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 394 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 335
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 334 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 275
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 274 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 215
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 214 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 155
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 154 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 97
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 96 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 38
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtcca 1152
|||||||||||||||||| |||||||||||||||||||
Sbjct: 37 gccatggcgatctcggtg-cccttgaagccgtagtcca 1
>gb|AV926549.1|AV926549 AV926549 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19m21 5', mRNA sequence
Length = 581
Score = 371 bits (187), Expect = e-101
Identities = 362/415 (87%), Gaps = 5/415 (1%)
Strand = Plus / Minus
Query: 784 gcggtcgatggcgctgatcagctccttctcgctgaagcgggcgctggagagctcgcccga 843
||||||||||||| |||| || ||||||||||||||| ||||||||||| ||||| |
Sbjct: 581 gcggtcgatggcggtgatgaggctcttctcgctgaagcgcgcgctggagaggtcgccggt 522
Query: 844 ggggttcatggtcagcaccttcttggccacctgggtcacggtgttcttcaccgacgcctt 903
||||||||||||||||||||||| | |||||| |||||| ||||||||| || | |||
Sbjct: 521 agggttcatggtcagcaccttcttcgacacctgcgtcacgcagttcttcacggaggtctt 462
Query: 904 gatgttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtgga 963
|||||||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||
Sbjct: 461 gatgttctcctcaaggtggcggaggtcgatggcctggcacagcgccaccatgtatgtgga 402
Query: 964 cgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggccca 1023
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |
Sbjct: 401 ggacatgagcttcaggatgtccacagcctcggcggtcttcct-ggccgagacgaggccga 343
Query: 1024 gggagttcacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggt 1083
| ||||||||||||||| |||||||||||||| ||||| || | ||||||| | ||| |
Sbjct: 342 gagagttcacgtcctgg-ttgtgctgctccgcactctggacat-ggttggtcaccgggtt 285
Query: 1084 gcccangtactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagc 1143
| | | |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 284 ggcaaggtactggagctcagagcagtaggaagccatggcgatctcggtg-cccttgaagc 226
Query: 1144 cgtagtccaggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
||||||||| ||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 225 cgtagtccaagctggggttgcggctgcctgccaggttggaggtcagcccgttgtt 171
>gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd26e14 5', mRNA sequence
Length = 625
Score = 371 bits (187), Expect = e-101
Identities = 380/441 (86%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 439 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 380
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 379 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 320
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 319 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 260
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 259 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 200
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 199 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 140
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 139 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 82
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 81 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 23
Query: 1115 gccatggcgatctcggtgccc 1135
|||||||||||||||||||||
Sbjct: 22 gccatggcgatctcggtgccc 2
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 515 acgaagcggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtg 574
||||||||||||||||||||||||| ||| ||| |||| |||| | | ||| || |||
Sbjct: 625 acgaagcggtacagcgggaacgacctgctctccttgatcaggttggggatgggcgccgtg 566
Query: 575 ccctcggcgaccgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcc 634
|| | ||| ||||||||||||||||| | |||| | ||||| ||| || ||||||
Sbjct: 565 ccgttctcgaaggccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcc 506
Query: 635 tcctcgaacctggtgatcttggagaacac 663
||||||||| || ||||||||||||||||
Sbjct: 505 tcctcgaacttgttgatcttggagaacac 477
>gb|BI957512.1|BI957512 HVSMEn0009P04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0009P04f,
mRNA sequence
Length = 639
Score = 369 bits (186), Expect = e-100
Identities = 379/440 (86%), Gaps = 3/440 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 448 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 389
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 388 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 329
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 328 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 269
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 268 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 209
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 208 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 149
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 148 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 91
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 90 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 32
Query: 1115 gccatggcgatctcggtgcc 1134
||||||||||||||||||||
Sbjct: 31 gccatggcgatctcggtgcc 12
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 515 acgaagcggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtg 574
||||||||||||||||||| |||| |||| ||| |||| |||| | | ||| || |||
Sbjct: 634 acgaagcggtacagcgggaccgactggctctccttgatcaggttggggatgggcgccgtg 575
Query: 575 ccctcggcgaccgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcc 634
|| | ||| ||||||||||||||||| | |||| | ||||| ||| || ||||||
Sbjct: 574 ccgttctcgaaggccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcc 515
Query: 635 tcctcgaacctggtgatcttggagaacac 663
||||||||| || ||||||||||||||||
Sbjct: 514 tcctcgaacttgttgatcttggagaacac 486
>gb|AV926550.1|AV926550 AV926550 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19m22 5', mRNA sequence
Length = 552
Score = 357 bits (180), Expect = 5e-097
Identities = 342/391 (87%), Gaps = 5/391 (1%)
Strand = Plus / Minus
Query: 808 cttctcgctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttctt 867
||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 549 cttctcgctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttctt 490
Query: 868 ggccacctgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcag 927
| |||||| |||||| ||||||||| || | ||||||||||||||| |||||||| ||
Sbjct: 489 cgacacctgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggag 430
Query: 928 gtccacggcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgat 987
||| | |||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 429 gtcgatggcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccac 370
Query: 988 cgcctcggcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgc 1047
||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 369 agcctcggcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgc 312
Query: 1048 tgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagca 1107
|||||||| ||||| || | ||||||| | ||| || | | |||||||||||| |||||
Sbjct: 311 tgctccgcactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagca 253
Query: 1108 gtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gn 1166
|||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct: 252 gtaggaagccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttncggc 194
Query: 1167 ngccggccaggtttgaggtgagcccgttgtt 1197
||| |||||||| ||||| |||||||||||
Sbjct: 193 tgcctgccaggttggaggtcagcccgttgtt 163
>gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0023J05f, mRNA sequence
Length = 819
Score = 355 bits (179), Expect = 2e-096
Identities = 372/433 (85%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 430 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 371
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 370 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 311
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 310 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 251
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 250 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 191
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 190 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 131
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 130 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 73
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 72 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 14
Query: 1115 gccatggcgatct 1127
|||||||||||||
Sbjct: 13 gccatggcgatct 1
Score = 186 bits (94), Expect = 1e-045
Identities = 251/302 (83%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 362 atgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgagcttg 421
|||||||| | || ||||| ||||||| |||||||||||||||||||||| | |||||||
Sbjct: 768 atgggcagggcctcgccgttccactccctgaggcactcgagcatggggtcgatgagcttg 709
Query: 422 ccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcctctcg 481
|||||| ||||||| || |||||| |||| |||||||||||| || ||| |||||
Sbjct: 708 ttctggctaatgccgagaaagaccttggtgcattcctcgccgggg-acagcagcttctcg 650
Query: 482 ccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacgaccgg 541
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 649 ccggtgaggtacacgcagccgagctcctcgcgaacgaagcggtacagcgggaacgacctg 590
Query: 542 ctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggcggcc 601
|| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||||||
Sbjct: 589 ctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggcggcc 530
Query: 602 tccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttggagaac 661
|| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||||||
Sbjct: 529 tcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttggagaac 470
Query: 662 ac 663
||
Sbjct: 469 ac 468
>gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109D04_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Histidine ammonia-lyase,Phenylalanine
ammonia-lyase,, mRNA sequence
Length = 812
Score = 339 bits (171), Expect = 1e-091
Identities = 377/441 (85%), Gaps = 4/441 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 465 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 406
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 405 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 346
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 345 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 286
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| |||| |
Sbjct: 285 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtggt-g 227
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 226 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 167
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 166 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 109
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 108 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 50
Query: 1115 gccatggcgatctcggtgccc 1135
|||||||||||||||| ||||
Sbjct: 49 gccatggcgatctcggggccc 29
Score = 127 bits (64), Expect = 9e-028
Identities = 126/144 (87%), Gaps = 2/144 (1%)
Strand = Plus / Minus
Query: 397 ctcgagcatggggtccacgagcttgccctggctgatgccgacgaacacc-ttgttgcact 455
||||||||||||||| | ||||||| | |||||||||||| ||| ||| ||| |||| |
Sbjct: 767 ctcgagcatggggtcgatgagcttgtctgggctgatgccga-gaagacccttggtgcatt 709
Query: 456 cctcgccgggggacttgagcctctcgccggtcaggaacacgcagccgagctcctcgcgca 515
|||||||||||||| ||| ||||| |||| ||| |||||||||||||||||||||| |
Sbjct: 708 cctcgccgggggacagcagcttctcggcggtgaggtacacgcagccgagctcctcgcgga 649
Query: 516 cgaagcggtacagcgggaacgacc 539
||||||||||||||||||||||||
Sbjct: 648 cgaagcggtacagcgggaacgacc 625
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 587 gccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctg 646
||||||||||||||||| | |||| | ||||| ||| || ||||||||||||||| ||
Sbjct: 579 gccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttg 520
Query: 647 gtgatcttggagaacac 663
||||||||||||||||
Sbjct: 519 ttgatcttggagaacac 503
>gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13V 5', mRNA sequence
Length = 689
Score = 331 bits (167), Expect = 3e-089
Identities = 357/417 (85%), Gaps = 3/417 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 417 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 358
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 357 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 298
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 297 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 238
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 237 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 178
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 177 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 118
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 117 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 60
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtag 1111
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||
Sbjct: 59 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtag 4
Score = 69.9 bits (35), Expect = 2e-010
Identities = 131/162 (80%), Gaps = 1/162 (0%)
Strand = Plus / Minus
Query: 503 agctcctcgcgc-acgaagcggtacagcgggaacgaccggctgtccgcgatccggttcgc 561
||||||||||| ||||||||||||||||||||||||| ||| ||| |||| |||| |
Sbjct: 616 agctcctcgcgggacgaagcggtacagcgggaacgacctgctctccttgatcaggttggg 557
Query: 562 cacgggggcggtgccctcggcgaccgccacgcgggcggcctccacctcctggggcagcac 621
| ||| || ||||| | ||| ||||||||| ||||||| | |||| | ||||| |
Sbjct: 556 gatgggcgccgtgccgttctcgaaggccacgcggncggcctcgatctcccgcggcagggc 497
Query: 622 cgcgcggagctcctcctcgaacctggtgatcttggagaacac 663
|| || ||||||||||||||| || ||||||||||||||||
Sbjct: 496 cgaccgcagctcctcctcgaacttgttgatcttggagaacac 455
>gb|BE214612.2|BE214612 HV_CEb0003P13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003P13f, mRNA sequence
Length = 728
Score = 325 bits (164), Expect = 2e-087
Identities = 354/414 (85%), Gaps = 3/414 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 430 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 371
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 370 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 311
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 310 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 251
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 250 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 191
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 190 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 131
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 130 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 73
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcag 1108
| ||||| || | ||||||| | ||| || | | |||||||||||| ||||||
Sbjct: 72 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcag 20
Score = 93.7 bits (47), Expect = 1e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 477 tctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacg 536
|||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 655 tctcgcgggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacg 596
Query: 537 acc 539
|||
Sbjct: 595 acc 593
Score = 52.0 bits (26), Expect = 4e-005
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 587 gccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctg 646
||||||||||||||||| | |||| | ||||| ||| || ||||||||||||||| ||
Sbjct: 545 gccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttg 486
Query: 647 -gtgatcttggagaacac 663
||||||||||||||||
Sbjct: 485 tttgatcttggagaacac 468
>gb|BI959811.1|BI959811 HVSMEn0021K21f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021K21f,
mRNA sequence
Length = 668
Score = 323 bits (163), Expect = 8e-087
Identities = 318/367 (86%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 406 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 347
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 346 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 287
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 286 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 227
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 226 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 167
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 166 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 107
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 106 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 49
Query: 1055 cgctctg 1061
| |||||
Sbjct: 48 cactctg 42
Score = 65.9 bits (33), Expect = 3e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 587 gccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctg 646
||||||||||||||||| | |||| | ||||| ||| || ||||||||||||||| ||
Sbjct: 520 gccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttg 461
Query: 647 gtgatcttggagaacac 663
||||||||||||||||
Sbjct: 460 ttgatcttggagaacac 444
>gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 5', mRNA sequence
Length = 618
Score = 319 bits (161), Expect = 1e-085
Identities = 313/361 (86%), Gaps = 2/361 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 362 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 303
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 302 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 243
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 242 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 183
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 182 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 123
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 122 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 63
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 62 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 5
Query: 1055 c 1055
|
Sbjct: 4 c 4
Score = 111 bits (56), Expect = 5e-023
Identities = 178/216 (82%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 450 tgcactcctcgccgggggacttgagcctctcgccggtcaggaacacgca-gccgagctcc 508
|||| ||||||||||||||| ||| |||||||||| ||| ||||||| ||||||||||
Sbjct: 615 tgcattcctcgccgggggacagcagcttctcgccggtgaggtacacgcaagccgagctcc 556
Query: 509 tcgcgcacgaagcggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggg 568
||||| ||||||||||||||||||||||||| ||| ||| |||| |||| | | |||
Sbjct: 555 tcgcggacgaagcggtacagcgggaacgacctgctctccttgatcaggttggggatgggc 496
Query: 569 gcggtgccctcggcgaccgccacgcgggcggcctccacctcctggggcagcaccgcgcg- 627
|| ||||| | ||| ||||||||||||||||| | |||| | ||||| ||| ||
Sbjct: 495 gccgtgccgttctcgaaggccacgcgggcggcctcgatctcccgcggcagggccgaccgc 436
Query: 628 gagctcctcctcgaacctggtgatcttggagaacac 663
||||||||||||||| || ||||||||||||||||
Sbjct: 435 aagctcctcctcgaacttgttgatcttggagaacac 400
>gb|BI958293.1|BI958293 HVSMEn0014E11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0014E11f,
mRNA sequence
Length = 675
Score = 317 bits (160), Expect = 5e-085
Identities = 353/414 (85%), Gaps = 3/414 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 411 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 352
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 351 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 292
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | |||
Sbjct: 291 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacaca 232
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 231 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 172
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 171 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 112
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 111 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 54
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcag 1108
| ||||| || | ||||||| | ||| || | | |||||||||||| ||||||
Sbjct: 53 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcag 1
>gb|BI959927.1|BI959927 HVSMEn0022G20f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022G20f,
mRNA sequence
Length = 645
Score = 317 bits (160), Expect = 5e-085
Identities = 308/352 (87%), Gaps = 5/352 (1%)
Strand = Plus / Minus
Query: 847 gttcatggtcagcaccttcttggccacctgggtcacggtgttcttcaccgacgccttgat 906
||||||||||||||||||||| | |||||| |||||| ||||||||| || | ||||||
Sbjct: 645 gttcatggtcagcaccttcttcgacacctgcgtcacgcagttcttcacggaggtcttgat 586
Query: 907 gttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacga 966
|| |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||| ||
Sbjct: 585 gtcctcctcaaggtggcggaggtcgatggcctggcacagcgccaccatgtatgtggagga 526
Query: 967 catgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccaggg 1026
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||| || |
Sbjct: 525 catgagcttcaggatgtccacagcctcggcggtcttcct-ggccgagacgaggccgagag 467
Query: 1027 agttcacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcc 1086
|||||||||||||| |||||||||||||| ||||| || | ||||||| | ||| || |
Sbjct: 466 agttcacgtcctgg-ttgtgctgctccgcactctggacat-ggttggtcaccgggttggc 409
Query: 1087 cangtactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgt 1146
| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 408 aaggtactggagctcagagcagtaggaagccatggcgatctcggtg-cccttgaagccgt 350
Query: 1147 agtccaggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
|||||| ||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 349 agtccaagctggggttgcggctgcctgccaggttggaggtcagcccgttgtt 298
>gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010B19f,
mRNA sequence
Length = 633
Score = 311 bits (157), Expect = 3e-083
Identities = 356/419 (84%), Gaps = 3/419 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 446 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 387
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 386 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 327
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 326 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 267
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 266 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 207
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||| | ||||||||||||||||||| | ||||||
Sbjct: 206 gcctggcacagcgccaccatgtatgtgcagcacatgagcttcaggatgtccacagcctcg 147
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||
Sbjct: 146 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtcctgctccg 89
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtagga 1113
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 88 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtagga 31
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 515 acgaagcggtacagcgggaacgaccggctgtccgcgatccggttcgccacgggggcggtg 574
||||||||||||||||||||||||| ||| ||| |||| |||| | | ||| || |||
Sbjct: 632 acgaagcggtacagcgggaacgacctgctctccttgatcaggttggggatgggcgccgtg 573
Query: 575 ccctcggcgaccgccacgcgggcggcctccacctcctggggcagcaccgcgcggagctcc 634
|| | ||| ||||||||||||||||| | |||| | ||||| ||| || ||||||
Sbjct: 572 ccgttctcgaaggccacgcgggcggcctcgatctcccgcggcagggccgaccgcagctcc 513
Query: 635 tcctcgaacctggtgatcttggagaacac 663
||||||||| || ||||||||||||||||
Sbjct: 512 tcctcgaacttgttgatcttggagaacac 484
>gb|AV923115.1|AV923115 AV923115 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd3n19 5', mRNA sequence
Length = 607
Score = 309 bits (156), Expect = 1e-082
Identities = 301/348 (86%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 453 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 394
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 393 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 334
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 333 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 274
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 273 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 214
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 213 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 154
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtt 1042
||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct: 153 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctggtt 107
Score = 113 bits (57), Expect = 1e-023
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 1090 gtactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagt 1149
|||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 100 gtactggagctcagagcagtaggaagccatggcgatctcggtg-cccttgaagccgtagt 42
Query: 1150 ccaggctggggttgcg 1165
||| ||||||||||||
Sbjct: 41 ccaagctggggttgcg 26
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 629 agctcctcctcgaacctggtgatcttggagaacac 663
||||||||||||||| || ||||||||||||||||
Sbjct: 525 agctcctcctcgaacttgttgatcttggagaacac 491
>gb|BU988288.1|BU988288 HF17D09r HF Hordeum vulgare subsp. vulgare cDNA clone HF17D09
5-PRIME, mRNA sequence
Length = 481
Score = 307 bits (155), Expect = 5e-082
Identities = 316/367 (86%), Gaps = 2/367 (0%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 413 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 354
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 353 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 294
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 293 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 234
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 233 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 174
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||| | ||||||||||||||||||| | ||||||
Sbjct: 173 gcctggcacagcgccaccatgtatgtgaagaacatgagcttcaggatgtccacagcctcg 114
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 113 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 56
Query: 1055 cgctctg 1061
| |||||
Sbjct: 55 cactctg 49
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 633 cctcctcgaacctggtgatcttggagaacac 663
||||||||||| || ||||||||||||||||
Sbjct: 481 cctcctcgaacttgttgatcttggagaacac 451
>gb|AV926724.1|AV926724 AV926724 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23i14 5', mRNA sequence
Length = 569
Score = 287 bits (145), Expect = 4e-076
Identities = 275/313 (87%), Gaps = 5/313 (1%)
Strand = Plus / Minus
Query: 886 gttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacggcctggcacag 945
||||||||| || | ||||||||||||||| |||||||| ||||| | ||||||||||||
Sbjct: 556 gttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatggcctggcacag 497
Query: 946 cgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcct 1005
|||||| ||||| ||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct: 496 cgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcggcggtcttcct 437
Query: 1006 gggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctctgcacg 1065
||||||||||||||| || ||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 436 -ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccgcactctggaca 379
Query: 1066 tgggttggtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcgat 1125
| ||||||| | ||| || | | |||||||||||| ||||||||||| |||||||||||
Sbjct: 378 t-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaagccatggcgat 320
Query: 1126 ctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggccaggtttgagg 1184
||||||| ||||||||||||||||||| ||||||||||| | ||| |||||||| ||||
Sbjct: 319 ctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgccaggttggagg 261
Query: 1185 tgagcccgttgtt 1197
| |||||||||||
Sbjct: 260 tcagcccgttgtt 248
>gb|BI960417.1|BI960417 HVSMEn0024I12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024I12f,
mRNA sequence
Length = 659
Score = 264 bits (133), Expect = 6e-069
Identities = 260/297 (87%), Gaps = 5/297 (1%)
Strand = Plus / Minus
Query: 902 ttgatgttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtg 961
|||||||||||||| |||||||| ||||| | |||||||| ||||||||| ||||| |||
Sbjct: 616 ttgatgttctcctcaaggtggcggaggtcgatggcctggcccagcgccaccatgtatgtg 557
Query: 962 gacgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcc 1021
|| |||||||||||||||||||| | |||||| |||||||||| |||||||||||||||
Sbjct: 556 gaggacatgagcttcaggatgtccacagcctcgccggtcttcct-ggccgagacgaggcc 498
Query: 1022 cagggagttcacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggg 1081
|| ||||||||||||||| |||||||||||||| ||||| || | ||||||| | |||
Sbjct: 497 gagagagttcacgtcctgg-ttgtgctgctccgcactctggacat-ggttggtcaccggg 440
Query: 1082 gtgcccangtactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaa 1141
|| | | |||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 439 ttggcaaggtactggagctcagagcagtaggaagccatggcgatctcggtg-cccttgaa 381
Query: 1142 gccgtagtccaggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
||||||||||| ||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 380 gccgtagtccaagctggggttgcggctgcctgccaggttggaggtcagcccgttgtt 324
>gb|AL505744.1|AL505744 AL505744 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G10V 5', mRNA sequence
Length = 500
Score = 254 bits (128), Expect = 6e-066
Identities = 251/287 (87%), Gaps = 5/287 (1%)
Strand = Plus / Minus
Query: 912 cctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgacatga 971
|||| |||||||| ||||| | |||||||||||||||||| ||||| ||||| |||||||
Sbjct: 500 cctcaaggtggcggaggtcgatggcctggcacagcgccaccatgtatgtggaggacatga 441
Query: 972 gcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccagggagttc 1031
||||||||||||| | ||||||||||||||||| ||||||||||||||| || ||||||
Sbjct: 440 gcttcaggatgtccacagcctcggcggtcttcct-ggccgagacgaggccgagagagttc 382
Query: 1032 acgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangt 1091
||||||||| ||||| |||||||| ||||| || | ||||||| | ||| || | | ||
Sbjct: 381 acgtcctgg-ttgtgntgctccgcactctggacat-ggttggtcaccgggttggcaaggt 324
Query: 1092 actggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtcc 1151
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 323 actggagctcagagcagtaggaagccatggcgatctcggtg-cccttgaagccgtagtcc 265
Query: 1152 aggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
| ||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 264 aagctggggttgcggctgcctgccaggttggaggtcagcccgttgtt 218
>gb|AV925746.1|AV925746 AV925746 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd25k06 5', mRNA sequence
Length = 435
Score = 246 bits (124), Expect = 1e-063
Identities = 233/264 (88%), Gaps = 5/264 (1%)
Strand = Plus / Minus
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcg 994
||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 435 gcctggcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcg 376
Query: 995 gcggtcttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccg 1054
||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 375 gcggtcttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccg 318
Query: 1055 cgctctgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggag 1114
| ||||| || | ||||||| | ||| || | | |||||||||||| |||||||||||
Sbjct: 317 cactctggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaa 259
Query: 1115 gccatggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggc 1173
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||
Sbjct: 258 gccatggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgc 200
Query: 1174 caggtttgaggtgagcccgttgtt 1197
|||||| ||||| |||||||||||
Sbjct: 199 caggttggaggtcagcccgttgtt 176
>gb|BF624772.2|BF624772 HVSMEa0017L07f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0017L07f, mRNA sequence
Length = 759
Score = 242 bits (122), Expect = 2e-062
Identities = 258/298 (86%), Gaps = 5/298 (1%)
Strand = Plus / Minus
Query: 901 cttgatgttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggt 960
|||||||||||| | ||||| || ||||| | |||||||||||||||||| ||||| ||
Sbjct: 713 cttgatgttctctccaaggtgccggaggtcgatggcctggcacagcgccaccatgtatgt 654
Query: 961 ggacgacatgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggc 1020
| | |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 653 gtaggacatgagcttcaggatgtccacagcctcggcggtcttcct-ggccgagacgaggc 595
Query: 1021 ccagggagttcacgtcctggtttgtgctgctccgcgctctgcacgtgggttggtgatggg 1080
| || ||||||||||||||| ||||||||||||| ||||| || | ||||||| | ||
Sbjct: 594 cgagagagttcacgtcctgg-atgtgctgctccgcactctggacat-ggttggtcaccgg 537
Query: 1081 ggtgcccangtactggagctcngagcagtaggaggccatggcgatctcggtgccccttga 1140
| || | | |||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct: 536 gttggcaaggtactggagctcagagcagtaggaagccatggcgatctcggtg-cccttga 478
Query: 1141 agccgtagtccaggctggggttgc-gnngccggccaggtttgaggtgagcccgttgtt 1197
|||||||||||| ||||||||||| | ||| |||||||| ||||| |||||||||||
Sbjct: 477 agccgtagtccaagctggggttgcggctgcctgccaggttggaggtcagcccgttgtt 420
>gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K19f, mRNA sequence
Length = 773
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 621 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 562
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 561 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 502
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 442
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 441 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 382
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 381 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 322
Query: 658 gaacac 663
||||||
Sbjct: 321 gaacac 316
Score = 226 bits (114), Expect = 1e-057
Identities = 237/278 (85%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 278 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 219
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 218 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 159
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 158 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 99
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 98 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 39
Query: 935 gcctggcacagcgccacgatgtaggtggacgacatgag 972
||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 38 gcctggcacagcgccaccatgtatgtggaggacatgag 1
>gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022A20f, mRNA sequence
Length = 623
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 472 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 413
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 412 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 353
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 352 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 293
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 292 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 233
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 232 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 173
Query: 658 gaacac 663
||||||
Sbjct: 172 gaacac 167
Score = 77.8 bits (39), Expect = 8e-013
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 129 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 70
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgat 801
||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct: 69 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgat 23
>gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 3', mRNA sequence
Length = 701
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 248 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 307
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 308 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 367
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 427
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 428 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 487
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 488 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 547
Query: 658 gaacac 663
||||||
Sbjct: 548 gaacac 553
Score = 77.8 bits (39), Expect = 8e-013
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 591 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 650
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgat 801
||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct: 651 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgat 697
>gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j05 3', mRNA sequence
Length = 609
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 228 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 287
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 288 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 347
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 348 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 407
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 408 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 467
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 468 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 527
Query: 658 gaacac 663
||||||
Sbjct: 528 gaacac 533
Score = 44.1 bits (22), Expect = 0.011
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 699 cgtggtccaccagcacggcgcgcactttctgcat 732
|||||||||| ||||||||||||| ||||||||
Sbjct: 576 cgtggtccacgagcacggcgcgcagcttctgcat 609
>gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15c08 3', mRNA sequence
Length = 671
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 248 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 307
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 308 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 367
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 427
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 428 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 487
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 488 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 547
Query: 658 gaacac 663
||||||
Sbjct: 548 gaacac 553
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcag 735
|||||||||||||| ||||||||||||| |||||||||||
Sbjct: 591 agggcgtggtccacgagcacggcgcgcagcttctgcatcag 631
>gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p01 3', mRNA sequence
Length = 560
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 249 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 308
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 309 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 368
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 369 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 428
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 429 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 488
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 489 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 548
Query: 658 gaacac 663
||||||
Sbjct: 549 gaacac 554
>gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18e12 3', mRNA sequence
Length = 664
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 248 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 307
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 308 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 367
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 427
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 428 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 487
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 488 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 547
Query: 658 gaacac 663
||||||
Sbjct: 548 gaacac 553
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcag 735
|||||||||||||| ||||||||||||| |||||||||||
Sbjct: 591 agggcgtggtccacgagcacggcgcgcagcttctgcatcag 631
>gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e13 3', mRNA sequence
Length = 564
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 248 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 307
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 308 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 367
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 427
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 428 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 487
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 488 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 547
Query: 658 gaacac 663
||||||
Sbjct: 548 gaacac 553
>gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e14 3', mRNA sequence
Length = 602
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 229 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 288
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 289 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 348
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 349 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 408
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 409 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 468
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 469 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 528
Query: 658 gaacac 663
||||||
Sbjct: 529 gaacac 534
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 695 agggcgtggtccaccagcacggcgcgca 722
|||||||||||||| |||||||||||||
Sbjct: 572 agggcgtggtccacgagcacggcgcgca 599
>gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_L15 5', mRNA sequence
Length = 615
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 586 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 527
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 526 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 467
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 466 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 407
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 406 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 347
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 346 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 287
Query: 658 gaacac 663
||||||
Sbjct: 286 gaacac 281
Score = 182 bits (92), Expect = 2e-044
Identities = 200/236 (84%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 243 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 184
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 183 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 124
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 123 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 64
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtc 930
|| |||||| ||||||||| || | ||||||||||||||| |||||||| |||||
Sbjct: 63 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtc 8
>gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_E16 5', mRNA sequence
Length = 625
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 598 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 539
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 538 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 479
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 419
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 418 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 359
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 358 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 299
Query: 658 gaacac 663
||||||
Sbjct: 298 gaacac 293
Score = 204 bits (103), Expect = 5e-051
Identities = 217/255 (85%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 255 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 196
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 195 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 136
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
|||||||| ||||||||||| ||||| | ||||||||||||||||||||||| | ||||
Sbjct: 135 ctgaagcgcgcgctggagaggtcgccggtagggttcatggtcagcaccttcttcgacacc 76
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| || | ||||||||||||||| |||||||| ||||| | |
Sbjct: 75 tgcgtcacgcagttcttcacggaggtcttgatgttctcctcaaggtggcggaggtcgatg 16
Query: 935 gcctggcacagcgcc 949
|||||||||||||||
Sbjct: 15 gcctggcacagcgcc 1
>gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F11
3-PRIME, mRNA sequence
Length = 596
Score = 242 bits (122), Expect = 2e-062
Identities = 260/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 268 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 327
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 328 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 387
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 388 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 447
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 448 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 507
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 508 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 567
Query: 658 gaacac 663
||||||
Sbjct: 568 gaacac 573
>gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22p22 3', mRNA sequence
Length = 572
Score = 236 bits (119), Expect = 1e-060
Identities = 259/306 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 207 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 266
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 267 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 326
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 327 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 386
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 387 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 446
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | || || ||| || ||||||||||||||| || ||||||||||
Sbjct: 447 ggcctcgatctcccgcggnagggccgaccgcagctcctcctcgaacttgttgatcttgga 506
Query: 658 gaacac 663
||||||
Sbjct: 507 gaacac 512
>gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18b11 3', mRNA sequence
Length = 550
Score = 236 bits (119), Expect = 1e-060
Identities = 257/303 (84%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 248 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 307
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 308 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 367
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 427
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 428 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 487
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 488 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 547
Query: 658 gaa 660
|||
Sbjct: 548 gaa 550
>gb|BI778012.2|BI778012 EBro07_SQ001_N12_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_N12 5', mRNA sequence
Length = 415
Score = 236 bits (119), Expect = 1e-060
Identities = 228/259 (88%), Gaps = 5/259 (1%)
Strand = Plus / Minus
Query: 940 gcacagcgccacgatgtaggtggacgacatgagcttcaggatgtcgatcgcctcggcggt 999
|||||||||||| ||||| ||||| |||||||||||||||||||| | |||||||||||
Sbjct: 415 gcacagcgccaccatgtatgtggaggacatgagcttcaggatgtccacagcctcggcggt 356
Query: 1000 cttcctgggccgagacgaggcccagggagttcacgtcctggtttgtgctgctccgcgctc 1059
|||||| ||||||||||||||| || ||||||||||||||| |||||||||||||| |||
Sbjct: 355 cttcct-ggccgagacgaggccgagagagttcacgtcctgg-ttgtgctgctccgcactc 298
Query: 1060 tgcacgtgggttggtgatgggggtgcccangtactggagctcngagcagtaggaggccat 1119
|| || | ||||||| | ||| || | | |||||||||||| ||||||||||| |||||
Sbjct: 297 tggacat-ggttggtcaccgggttggcaaggtactggagctcagagcagtaggaagccat 239
Query: 1120 ggcgatctcggtgccccttgaagccgtagtccaggctggggttgc-gnngccggccaggt 1178
||||||||||||| ||||||||||||||||||| ||||||||||| | ||| |||||||
Sbjct: 238 ggcgatctcggtg-cccttgaagccgtagtccaagctggggttgcggctgcctgccaggt 180
Query: 1179 ttgaggtgagcccgttgtt 1197
| ||||| |||||||||||
Sbjct: 179 tggaggtcagcccgttgtt 161
>gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004M09f, mRNA sequence
Length = 939
Score = 226 bits (114), Expect = 1e-057
Identities = 258/306 (84%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 585 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 526
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| || |||||| |||| ||||||||||||||| ||| |
Sbjct: 525 cttgttctggctgatgccgagcaagaccttggtgcattcctcgccgggggacagcagctt 466
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 465 ctcgccggtgaggtacacgcagccgagctcctcgcggactaagcggtacagcgggaacga 406
Query: 538 ccggctgtccgcgatccggttcgccacgggggcggtgccctcggcgaccgccacgcgggc 597
|| ||| ||| |||| |||| | | ||| || ||||| | ||| |||||||||||
Sbjct: 405 cctgctctccttgatcaggttggggatgggcgccgtgccgttctcgaaggccacgcgggc 346
Query: 598 ggcctccacctcctggggcagcaccgcgcggagctcctcctcgaacctggtgatcttgga 657
|||||| | |||| | ||||| ||| || ||||||||||||||| || ||||||||||
Sbjct: 345 ggcctcgatctcccgcggcagggccgaccgcagctcctcctcgaacttgttgatcttgga 286
Query: 658 gaacac 663
||||||
Sbjct: 285 gaacac 280
Score = 115 bits (58), Expect = 3e-024
Identities = 196/242 (80%)
Strand = Plus / Minus
Query: 695 agggcgtggtccaccagcacggcgcgcactttctgcatcagcggcaggctgccgctggcc 754
|||||||||||||| ||||||||||||| ||||||||||| || | || |||||
Sbjct: 242 agggcgtggtccacgagcacggcgcgcagcttctgcatcagtgggtagttggcgctgcat 183
Query: 755 gcgtcctccgcgtacgtgaacacggcctcgcggtcgatggcgctgatcagctccttctcg 814
||||| || ||||| |||||||||||||||||||||||||| |||| || |||||||
Sbjct: 182 gcgtcgtcggcgtagctgaacacggcctcgcggtcgatggcggtgatgaggctcttctcg 123
Query: 815 ctgaagcgggcgctggagagctcgcccgaggggttcatggtcagcaccttcttggccacc 874
| ||||| ||| ||||||| ||||| | ||||||||||||||||| ||||| |||
Sbjct: 122 atcaagcgcgcgatggagaggtcgccggtagggttcatggtcagcactttcttcaacaca 63
Query: 875 tgggtcacggtgttcttcaccgacgccttgatgttctcctcgaggtggcgcaggtccacg 934
|| |||||| ||||||||| | | | ||||||||||||| ||||| || ||||| |||
Sbjct: 62 tgcgtcacgcagttcttcacgtaggtcatgatgttctcctcaaggtgccggaggtcgacg 3
Query: 935 gc 936
||
Sbjct: 2 gc 1
>gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O10u 3', mRNA sequence
Length = 559
Score = 220 bits (111), Expect = 8e-056
Identities = 164/182 (90%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 286 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 345
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 346 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagnagctt 405
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 465
Query: 538 cc 539
||
Sbjct: 466 cc 467
>gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cG.10, mRNA sequence
Length = 1180
Score = 218 bits (110), Expect = 3e-055
Identities = 164/182 (90%)
Strand = Plus / Minus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 388 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 329
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 328 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 269
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 209
Query: 538 cc 539
||
Sbjct: 208 cc 207
>gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O05u 3', mRNA sequence
Length = 690
Score = 218 bits (110), Expect = 3e-055
Identities = 164/182 (90%)
Strand = Plus / Plus
Query: 358 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 417
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 286 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 345
Query: 418 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccgggggacttgagcct 477
|||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||| |
Sbjct: 346 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccgggggacagcagctt 405
Query: 478 ctcgccggtcaggaacacgcagccgagctcctcgcgcacgaagcggtacagcgggaacga 537
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 ctcgccggtgaggtacacgcagccgagctcctcgcggacgaagcggtacagcgggaacga 465
Query: 538 cc 539
||
Sbjct: 466 cc 467
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 175,539
Number of Sequences: 312970
Number of extensions: 175539
Number of successful extensions: 51254
Number of sequences better than 0.5: 183
Number of HSP's better than 0.5 without gapping: 181
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50513
Number of HSP's gapped (non-prelim): 515
length of query: 1197
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1178
effective length of database: 169,188,109
effective search space: 199303592402
effective search space used: 199303592402
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)