BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots... 430 e-119
gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. v... 430 e-119
gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA li... 408 e-112
gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. v... 396 e-109
gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA li... 341 3e-092
gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 ... 264 6e-069
gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 ... 254 6e-066
gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedl... 252 2e-065
gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. v... 246 1e-063
gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. v... 240 8e-062
gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. v... 230 8e-059
gb|AV928911.1|AV928911 AV928911 K. Sato unpublished cDNA li... 222 2e-056
gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. v... 222 2e-056
gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. v... 210 7e-053
gb|BM097985.2|BM097985 EBpi03_SQ002_D16_R pistil, 4 DPA, no... 176 1e-042
gb|BM372122.2|BM372122 EBro03_SQ004_B11_R root, 3 week, wat... 133 1e-029
gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. v... 119 2e-025
gb|AL500663.1|AL500663 AL500663 Hordeum vulgare Barke roots... 70 2e-010
gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. v... 44 0.010
gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. v... 40 0.16
>gb|AL503276.1|AL503276 AL503276 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03T 5', mRNA sequence
Length = 700
Score = 430 bits (217), Expect = e-119
Identities = 427/497 (85%)
Strand = Plus / Minus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 616 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 557
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 556 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 497
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 496 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 437
Query: 581 tgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaac 640
||||| || ||||||||||||| ||||||||||||||| ||||| || || || || ||
Sbjct: 436 tgctggttcacaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaag 377
Query: 641 tgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccat 700
| ||||| || |||||||||||||| ||||| ||| | |||||||| ||||| ||||||
Sbjct: 376 tagggcaagaccaaccagcaattgaaaaacagttttccgtaagaccaaaaagggagccat 317
Query: 701 tcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtac 760
|| | ||| | |||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 316 tcaattactgcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaa 257
Query: 761 gtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggcatac 820
|||||||||||||||||||| | || |||||||||||| ||||||| |||||| ||||||
Sbjct: 256 gtgagccattgctgatcatctataggagattttgtttctattgctcgaacagacgcatac 197
Query: 821 agaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagacc 880
|||||||| || |||||||| | ||||| ||||| ||||||| |||| |||| | |||
Sbjct: 196 agaggataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcacc 137
Query: 881 ttgaggaaagatccgga 897
|||||||||||||||||
Sbjct: 136 ttgaggaaagatccgga 120
>gb|BU987425.1|BU987425 HF14L15r HF Hordeum vulgare subsp. vulgare cDNA clone HF14L15
5-PRIME, mRNA sequence
Length = 639
Score = 430 bits (217), Expect = e-119
Identities = 427/497 (85%)
Strand = Plus / Minus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 612 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 553
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 552 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 493
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 492 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 433
Query: 581 tgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaac 640
||||| || ||||||||||||| ||||||||||||||| ||||| || || || || ||
Sbjct: 432 tgctggttcacaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaag 373
Query: 641 tgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccat 700
| ||||| || |||||||||||||| ||||| ||| | |||||||| ||||| ||||||
Sbjct: 372 tagggcaagaccaaccagcaattgaaaaacagttttccgtaagaccaaaaagggagccat 313
Query: 701 tcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtac 760
|| | ||| | |||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 312 tcaattactgcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaa 253
Query: 761 gtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggcatac 820
|||||||||||||||||||| | || |||||||||||| ||||||| |||||| ||||||
Sbjct: 252 gtgagccattgctgatcatctataggagattttgtttctattgctcgaacagacgcatac 193
Query: 821 agaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagacc 880
|||||||| || |||||||| | ||||| ||||| ||||||| |||| |||| | |||
Sbjct: 192 agaggataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcacc 133
Query: 881 ttgaggaaagatccgga 897
|||||||||||||||||
Sbjct: 132 ttgaggaaagatccgga 116
>gb|AV916398.1|AV916398 AV916398 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 5', mRNA sequence
Length = 637
Score = 408 bits (206), Expect = e-112
Identities = 423/494 (85%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 505 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 446
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 445 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 386
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 385 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 326
Query: 581 tgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaac 640
||||| || ||||||||||||| ||||||||||||||| ||||| || || || || ||
Sbjct: 325 tgctggttcacaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaag 266
Query: 641 tgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccat 700
| ||||| || |||||||||||||| ||||| ||| | |||||||| ||||| ||||||
Sbjct: 265 tagggcaagaccaaccagcaattgaaaaacagttttccgtaagaccaaaaagggagccat 206
Query: 701 tcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtac 760
|| | ||| | |||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 205 tcaattactgcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaa 146
Query: 761 gtgagccattgctgatcatccacagcagattttgtttcaattgctctaacagaggcatac 820
|||||||||||||||||||| | || |||||||||||| ||||||| |||||| ||||||
Sbjct: 145 gtgagccattgctgatcatctataggagattttgtttctattgctcgaacagacgcatac 86
Query: 821 agaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagacc 880
|||||||| || |||||||| | ||||| ||||| ||||||| |||| |||| | |||
Sbjct: 85 agaggataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcacc 26
Query: 881 ttgaggaaagatcc 894
|||||||||||||
Sbjct: 25 -tgaggaaagatcc 13
>gb|CA019755.1|CA019755 HV13A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13A06
5-PRIME, mRNA sequence
Length = 558
Score = 396 bits (200), Expect = e-109
Identities = 386/448 (86%)
Strand = Plus / Minus
Query: 450 tcttaaacttgttaacaagattctcaaacgcttttgatccattttgctcaatgtacctct 509
|||||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 542 tcttaaacttgttaacgagagtctcaaatgctttagatccattttgttcaatgtatttct 483
Query: 510 gtgcagctgaaattacatcatcaggtctacttgattcatccttctttggaatataccaga 569
||||||||||||||||||| || ||| || ||| | ||||| ||||||||||||||||
Sbjct: 482 gtgcagctgaaattacatcgtcgggtttatctgaattttccttttttggaatataccaga 423
Query: 570 tgtttacaacttgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcag 629
|||||||||||||||| || ||||||||||||| ||||||||||||||| ||||| || |
Sbjct: 422 tgtttacaacttgctggttcacaatcattggccgcacaaaatgctcataaacatgcgctg 363
Query: 630 ctccattgaactgtggcaatactaaccagcaattgaagaacagctttgcataagaccaga 689
| || || || | ||||| || |||||||||||||| ||||| ||| | |||||||| |
Sbjct: 362 caccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttccgtaagaccaaa 303
Query: 690 aaggaagccattcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtaca 749
|||| |||||||| | ||| | |||||||||||||||||| ||||||||||| |||||||
Sbjct: 302 aagggagccattcaattactgcagcaaaggtgagctcgaacagagtgataaacgagtaca 243
Query: 750 gcacccagtacgtgagccattgctgatcatccacagcagattttgtttcaattgctctaa 809
||||||||| |||||||||||||||||||| | || |||||||||||| ||||||| ||
Sbjct: 242 acacccagtaagtgagccattgctgatcatctataggagattttgtttctattgctcgaa 183
Query: 810 cagaggcatacagaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgt 869
|||| |||||||||||||| || |||||||| | ||||| ||||| ||||||| ||||
Sbjct: 182 cagacgcatacagaggataagcgagtgaaactatgggcccggcgagaacatccaggttgc 123
Query: 870 tgaccaagaccttgaggaaagatccgga 897
|||| | ||||||||||||||||||||
Sbjct: 122 tgacgagcaccttgaggaaagatccgga 95
>gb|AV917913.1|AV917913 AV917913 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a21 3', mRNA sequence
Length = 675
Score = 341 bits (172), Expect = 3e-092
Identities = 328/380 (86%)
Strand = Plus / Plus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 295 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 354
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 355 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 414
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 415 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 474
Query: 581 tgctgatttacaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaac 640
||||| || ||||||||||||| ||||||||||||||| ||||| || || || || ||
Sbjct: 475 tgctggttcacaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaag 534
Query: 641 tgtggcaatactaaccagcaattgaagaacagctttgcataagaccagaaaggaagccat 700
| ||||| || |||||||||||||| ||||| ||| | |||||||| ||||| ||||||
Sbjct: 535 tagggcaagaccaaccagcaattgaaaaacagttttccgtaagaccaaaaagggagccat 594
Query: 701 tcgagtaccggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtac 760
|| | ||| | |||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 595 tcaattactgcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaa 654
Query: 761 gtgagccattgctgatcatc 780
||||||||||||||||||||
Sbjct: 655 gtgagccattgctgatcatc 674
>gb|BE194848.2|BE194848 HVSMEh0087D14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0087D14f, mRNA sequence
Length = 486
Score = 264 bits (133), Expect = 6e-069
Identities = 264/308 (85%)
Strand = Plus / Minus
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
||||||||||||| ||||||||||||||| ||||| || || || || || | |||||
Sbjct: 477 acaatcattggccgcacaaaatgctcataaacatgcgctgcaccgttaaagtagggcaag 418
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|| |||||||||||||| ||||| ||| | |||||||| ||||| |||||||| | |||
Sbjct: 417 accaaccagcaattgaaaaacagttttccgtaagaccanaaagggagccattcaattact 358
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
| |||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 357 gcagcaaaggtgagctcgaacagagtgataaacgagtacaacacccagtaagtgagccat 298
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| | || |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 297 tgctgatcatctataggagattttgtttctattgctcgaacagacgcatacagaggataa 238
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
|| |||||||| | ||||| ||||| ||||||| |||| |||| | ||||||||||||
Sbjct: 237 gcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcaccttgaggaaa 178
Query: 890 gatccgga 897
||||||||
Sbjct: 177 gatccgga 170
>gb|BE603265.2|BE603265 HVSMEh0102N13f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102N13f, mRNA sequence
Length = 729
Score = 254 bits (128), Expect = 6e-066
Identities = 353/428 (82%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 469 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 410
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| |||| | | ||||||| |||| | ||||||||||| || | ||| ||||
Sbjct: 409 tcaggtttactcaacttatccttccttgggacgtaccagatgttgactatttggcgattc 350
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
|||| |||||||| | |||||||||| || |||| ||||| |||||||| || ||
Sbjct: 349 acaaacattggccgcgcaaaatgctcgtaaacataagcagcaccattgaagcaaggaaag 290
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| ||||||||||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 289 actagccagcagttgaagaacagttttccatagggccagaatggaagccattcaagtatc 230
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 229 ggagcaaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 170
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 169 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 110
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||||||||||
Sbjct: 109 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaa 50
Query: 890 gatccgga 897
||||||||
Sbjct: 49 gatccgga 42
>gb|BE559134.1|BE559134 HV_CEb0023A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023A15f, mRNA sequence
Length = 551
Score = 252 bits (127), Expect = 2e-065
Identities = 229/263 (87%)
Strand = Plus / Minus
Query: 558 gaatataccagatgtttacaacttgctgatttacaatcattggcctcacaaaatgctcat 617
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 550 gaatataccagatgtttacaacttgctggttcacaatcattggccgcacaaaatgctcat 491
Query: 618 atacatgtgcagctccattgaactgtggcaatactaaccagcaattgaagaacagctttg 677
| ||||| || || || || || | ||||| || |||||||||||||| ||||| |||
Sbjct: 490 aaacatgcgctgcaccgttaaagtagggcaagaccaaccagcaattgaaaaacagttttc 431
Query: 678 cataagaccagaaaggaagccattcgagtaccggagcaaaggtgagctcgaatagagtga 737
| |||||||| ||||| |||||||| | ||| | |||||||||||||||||| |||||||
Sbjct: 430 cgtaagaccaaaaagggagccattcaattactgcagcaaaggtgagctcgaacagagtga 371
Query: 738 taaatgagtacagcacccagtacgtgagccattgctgatcatccacagcagattttgttt 797
|||| ||||||| ||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct: 370 taaacgagtacaacacccagtaagtgagccattgctgatcatctataggagattttgttt 311
Query: 798 caattgctctaacagaggcatac 820
| ||||||| |||||| ||||||
Sbjct: 310 ctattgctcgaacagacgcatac 288
Score = 63.9 bits (32), Expect = 1e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 818 tacagaggatacgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaag 877
||||||||||| || |||||||| | ||||| ||||| ||||||| |||| |||| |
Sbjct: 184 tacagaggataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagc 125
Query: 878 accttgaggaaagatccgga 897
||||||||||||||||||||
Sbjct: 124 accttgaggaaagatccgga 105
>gb|BU987338.1|BU987338 HF14H19r HF Hordeum vulgare subsp. vulgare cDNA clone HF14H19
5-PRIME, mRNA sequence
Length = 602
Score = 246 bits (124), Expect = 1e-063
Identities = 352/428 (82%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 449 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 390
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| |||| | | ||||||| |||| | ||||||||||| || | ||| ||||
Sbjct: 389 tcaggtttactcaacttatccttccttgggacgtaccagatgttgactatttggcgattc 330
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
|||| |||||||| | | |||||||| || |||| ||||| |||||||| || ||
Sbjct: 329 acaaacattggccgcgcgaaatgctcgtaaacataagcagcaccattgaagcaaggaaag 270
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| ||||||||||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 269 actagccagcagttgaagaacagttttccatagggccagaatggaagccattcaagtatc 210
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 209 ggagcaaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 150
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 149 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 90
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||||||||||
Sbjct: 89 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaa 30
Query: 890 gatccgga 897
||||||||
Sbjct: 29 gatccgga 22
>gb|BQ463836.1|BQ463836 HG01J11r HG Hordeum vulgare subsp. vulgare cDNA clone HG01J11
5-PRIME, mRNA sequence
Length = 574
Score = 240 bits (121), Expect = 8e-062
Identities = 349/425 (82%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 425 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 366
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| |||| | | ||||||| |||| | ||||||||||| || | ||| ||||
Sbjct: 365 tcaggtttactcaacttatccttccttgggacgtaccagatgttgactatttggcgattc 306
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
|||| |||||||| | | |||||||| || |||| ||||| |||||||| || ||
Sbjct: 305 acaaacattggccgcgcgaaatgctcgtaaacataagcagcaccattgaagcaaggaaag 246
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| ||||||||||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 245 actagccagcagttgaagaacagttttccatagggccagaatggaagccattcaagtatc 186
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 185 ggagcaaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 126
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 125 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 66
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||||||||||
Sbjct: 65 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaa 6
Query: 890 gatcc 894
|||||
Sbjct: 5 gatcc 1
>gb|CA030550.1|CA030550 HX07G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
5-PRIME, mRNA sequence
Length = 546
Score = 230 bits (116), Expect = 8e-059
Identities = 351/428 (82%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 449 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 390
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| |||| | | ||||||| |||| | ||||||||||| || | ||| ||||
Sbjct: 389 tcaggtttactcaacttatccttccttgggacgtaccagatgttgactatttggcgattc 330
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
|||| |||||||| | | |||||||| || |||| ||||| |||||||| || ||
Sbjct: 329 acaaacattggccgcgcgaaatgctcgtaaacataagcagcaccattgaagcaaggaaag 270
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| ||||||||||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 269 actagccagcagttgaagaacagttttccatagggccagaatggaagccattcaagtatc 210
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 209 ggagcaaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 150
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 149 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 90
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||| ||||||
Sbjct: 89 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcacctt-aggaaa 31
Query: 890 gatccgga 897
||||||||
Sbjct: 30 gatccgga 23
>gb|AV928911.1|AV928911 AV928911 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20c18 3', mRNA sequence
Length = 524
Score = 222 bits (112), Expect = 2e-056
Identities = 196/224 (87%)
Strand = Plus / Plus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 297 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 356
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 357 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 416
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 417 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 476
Query: 581 tgctgatttacaatcattggcctcacaaaatgctcatatacatg 624
||||| || ||||||||||||| ||||||||||||||| |||||
Sbjct: 477 tgctggttcacaatcattggccgcacaaaatgctcataaacatg 520
>gb|BQ470302.1|BQ470302 HX02H13r HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
5-PRIME, mRNA sequence
Length = 530
Score = 222 bits (112), Expect = 2e-056
Identities = 214/248 (86%)
Strand = Plus / Minus
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| ||||||||||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 501 actagccagcagttgaagaacagttttccatagggccagaatggaagccattcaagtatc 442
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 441 ggagcaaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 382
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 381 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 322
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||||||||||
Sbjct: 321 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaa 262
Query: 890 gatccgga 897
||||||||
Sbjct: 261 gatccgga 254
>gb|CA024250.1|CA024250 HZ48M15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48M15
5-PRIME, mRNA sequence
Length = 333
Score = 210 bits (106), Expect = 7e-053
Identities = 212/248 (85%)
Strand = Plus / Minus
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| |||||| |||||| |||| ||| |||| | |||||| ||||||||||| |||| |
Sbjct: 324 actagccagcagttgaagnacagttttccatagggccagaatggaagccattcaagtatc 265
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
||||| || |||||||| || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 264 ggagcnaaagtgagctcaaacaaagtgataaacgagtacagcacccagtaagtaagccat 205
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 204 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 145
Query: 830 gcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaa 889
||||| ||||||| ||||| |||||||| || | ||| ||| ||| ||||||||||||
Sbjct: 144 gcaagcgaaaccagtggcccggcgaggacgtcgaagttcttggccagcaccttgaggaaa 85
Query: 890 gatccgga 897
||||||||
Sbjct: 84 gatccgga 77
>gb|BM097985.2|BM097985 EBpi03_SQ002_D16_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D16 5', mRNA sequence
Length = 525
Score = 176 bits (89), Expect = 1e-042
Identities = 161/185 (87%)
Strand = Plus / Minus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 189 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 130
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 129 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 70
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatataccagatgtttacaact 580
|||||||| || ||| || ||| | ||||| |||||||||||||||||||||||||||
Sbjct: 69 attacatcgtcgggtttatctgaattttccttttttggaatataccagatgtttacaact 10
Query: 581 tgctg 585
|||||
Sbjct: 9 tgctg 5
>gb|BM372122.2|BM372122 EBro03_SQ004_B11_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_B11 5', mRNA sequence
Length = 499
Score = 133 bits (67), Expect = 1e-029
Identities = 141/166 (84%)
Strand = Plus / Minus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||| ||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 166 ctcctttccacctntacctcctccaaaatagagcgcctagagtttgtagtcttaaacttg 107
Query: 461 ttaacaagattctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaa 520
||||| ||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 106 ttaacgagagtctcaaatgctttagatccattttgttcaatgtatttctgtgcagctgaa 47
Query: 521 attacatcatcaggtctacttgattcatccttctttggaatatacc 566
|||||||| || ||| || ||| | ||||| |||||||||||||
Sbjct: 46 attacatcgtcgggtttatctgaattttccttttttggaatatacc 1
>gb|CA004284.1|CA004284 HS17C06r HS Hordeum vulgare subsp. vulgare cDNA clone HS17C06
5-PRIME, mRNA sequence
Length = 310
Score = 119 bits (60), Expect = 2e-025
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 766 ccattgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagagg 825
||||||||||||||| | || |||||||||||| ||||||| |||||| |||||||||||
Sbjct: 310 ccattgctgatcatctataggagattttgtttctattgctcgaacagacgcatacagagg 251
Query: 826 atacgcaagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgag 885
||| || |||||||| | ||||| ||||| ||||||| |||| |||| | ||||||||
Sbjct: 250 ataagcgagtgaaactatgggcccggcgagaacatccaggttgctgacgagcaccttgag 191
Query: 886 gaaagatccgga 897
||||||||||||
Sbjct: 190 gaaagatccgga 179
>gb|AL500663.1|AL500663 AL500663 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01H03u 3', mRNA sequence
Length = 481
Score = 69.9 bits (35), Expect = 2e-010
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 401 ctcctttcaacctctacctcctccagaattgagcgccttgggttcgaactcttaaacttg 460
|||||||| |||||||||||||||| ||| |||||||| | ||| | | |||||||||||
Sbjct: 391 ctcctttccacctctacctcctccaaaatagagcgcctcgcgtttgtagtcttaaacttg 450
Query: 461 -ttaacaagattctcaaacgcttttgatcca 490
||||| ||| ||||||| ||||| ||||||
Sbjct: 451 tttaacgagagtctcaaatgctttagatcca 481
>gb|CB875139.1|CB875139 HX07G08w HX Hordeum vulgare subsp. vulgare cDNA clone HX07G08
3-PRIME, mRNA sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.010
Identities = 115/146 (78%)
Strand = Plus / Plus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 474 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 533
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| |||| | | ||||||| |||| | ||||||||||| || | ||| ||||
Sbjct: 534 tcaggtttactcaacttatccttccttgggacgtaccagatgttgactatttggcgattc 593
Query: 590 acaatcattggcctcacaaaatgctc 615
|||| |||||||| | | ||||||||
Sbjct: 594 acaaacattggccgcgcgaaatgctc 619
>gb|BQ665185.1|BQ665185 HX02H13u HX Hordeum vulgare subsp. vulgare cDNA clone HX02H13
3-PRIME, mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.16
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || ||||||| | ||||| || ||| ||| ||||| | |||||||
Sbjct: 455 ttctcaaatgcttctggtccatttagttcaatatatttctctgcggctgagagtacatca 514
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtt 573
|||||| |||| | | ||||||| |||| | |||||||||||
Sbjct: 515 tcaggtttactcaacttatccttccttgggacgtaccagatgtt 558
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,588
Number of Sequences: 312970
Number of extensions: 94588
Number of successful extensions: 24032
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23990
Number of HSP's gapped (non-prelim): 21
length of query: 1139
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1120
effective length of database: 169,188,109
effective search space: 189490682080
effective search space used: 189490682080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)