BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 135 1e-030
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 135 1e-030
gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA li... 135 1e-030
gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA li... 135 1e-030
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 135 1e-030
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 135 1e-030
gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subs... 135 1e-030
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 135 1e-030
gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA li... 135 1e-030
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 135 1e-030
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 135 1e-030
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 135 1e-030
gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. v... 135 1e-030
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 135 1e-030
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 135 1e-030
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 135 1e-030
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 135 1e-030
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 135 1e-030
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 135 1e-030
gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. v... 135 1e-030
gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. v... 135 1e-030
gb|BQ664619.1|BQ664619 HV04C01u HV Hordeum vulgare subsp. v... 123 5e-027
gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subs... 111 2e-023
gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. v... 90 7e-017
gb|AL509654.1|AL509654 AL509654 Hordeum vulgare Barke devel... 64 4e-009
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 50 6e-005
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 50 6e-005
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 42 0.015
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 42 0.015
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 42 0.015
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 415 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 356
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 355 aatgcgctcgagactttaatagcattct 328
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 514 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 455
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 454 ttgaagcagctcttgtggtacatggtgttattgacagt 417
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 539 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 480
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 479 aatgcgctcgagactttaatagcattct 452
Score = 83.8 bits (42), Expect = 4e-015
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 39 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttgttaaca 98
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct: 602 atggtgcaacctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 543
Query: 99 gt 100
||
Sbjct: 542 gt 541
>gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 5', mRNA sequence
Length = 637
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 205
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 204 aatgcgctcgagactttaatagcattct 177
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 363 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 304
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 303 ttgaagcagctcttgtggtacatggtgttattgacagt 266
>gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 5', mRNA sequence
Length = 574
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 206
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 205 aatgcgctcgagactttaatagcattct 178
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 364 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 305
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 304 ttgaagcagctcttgtggtacatggtgttattgacagt 267
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 445
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 446 aatgcgctcgagactttaatagcattct 473
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 287 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 346
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 347 ttgaagcagctcttgtggtacatggtgttattgacagt 384
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 396 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 455
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 456 aatgcgctcgagactttaatagcattct 483
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 297 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 356
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 357 ttgaagcagctcttgtggtacatggtgttattgacagt 394
>gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F2, mRNA sequence
Length = 420
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 155 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 96
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 95 aatgcgctcgagactttaatagcattct 68
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 254 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 195
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 194 ttgaagcagctcttgtggtacatggtgttattgacagt 157
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 5', mRNA sequence
Length = 634
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 459 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 400
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 399 aatgcgctcgagactttaatagcattct 372
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 558 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 499
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 498 ttgaagcagctcttgtggtacatggtgttattgacagt 461
>gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 3', mRNA sequence
Length = 658
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 444
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 445 aatgcgctcgagactttaatagcattct 472
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 286 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 345
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 346 ttgaagcagctcttgtggtacatggtgttattgacagt 383
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
5-PRIME, mRNA sequence
Length = 635
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 370
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 369 aatgcgctcgagactttaatagcattct 342
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 528 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 469
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 468 ttgaagcagctcttgtggtacatggtgttattgacagt 431
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
5-PRIME, mRNA sequence
Length = 679
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 474 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 415
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 414 aatgcgctcgagactttaatagcattct 387
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 573 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 514
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 513 ttgaagcagctcttgtggtacatggtgttattgacagt 476
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
5-PRIME, mRNA sequence
Length = 572
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 379
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 378 aatgcgctcgagactttaatagcattct 351
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 537 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 478
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 477 ttgaagcagctcttgtggtacatggtgttattgacagt 440
>gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
3-PRIME, mRNA sequence
Length = 550
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 416 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 475
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 476 aatgcgctcgagactttaatagcattct 503
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 317 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 376
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 377 ttgaagcagctcttgtggtacatggtgttattgacagt 414
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E02 5', mRNA sequence
Length = 646
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 369
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 368 aatgcgctcgagactttaatagcattct 341
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 527 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 468
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 467 ttgaagcagctcttgtggtacatggtgttattgacagt 430
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_L10 5', mRNA sequence
Length = 464
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 376 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 317
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 316 aatgcgctcgagactttaatagcattct 289
Score = 111 bits (56), Expect = 2e-023
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 21 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 80
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 457 atgtaattcgaagggctgatggtgcaccctccatggcagcatttgaagcagctcttgtgg 398
Query: 81 tacatagtgttgttaacagt 100
||||| ||||| || |||||
Sbjct: 397 tacatggtgttattgacagt 378
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_B17 5', mRNA sequence
Length = 631
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 431 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 372
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 371 aatgcgctcgagactttaatagcattct 344
Score = 109 bits (55), Expect = 8e-023
Identities = 89/99 (89%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctcc-atggcagca 61
||||| |||||||| || ||||| || ||||||||||||||||||||||| |||||||||
Sbjct: 531 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctcccatggcagca 472
Query: 62 cttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 471 tttgaagcagctcttgtggtacatggtgttattgacagt 433
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K11 5', mRNA sequence
Length = 746
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 373 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 314
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 313 aatgcgctcgagactttaatagcattct 286
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 472 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 413
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 412 ttgaagcagctcttgtggtacatggtgttattgacagt 375
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
5-PRIME, mRNA sequence
Length = 631
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 500
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 499 aatgcgctcgagactttaatagcattct 472
Score = 109 bits (55), Expect = 8e-023
Identities = 67/71 (94%)
Strand = Plus / Minus
Query: 30 gaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtg 89
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 631 gaagggctgatggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtg 572
Query: 90 ttgttaacagt 100
|| || |||||
Sbjct: 571 ttattgacagt 561
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
5-PRIME, mRNA sequence
Length = 584
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 412 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 353
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 352 aatgcgctcgagactttaatagcattct 325
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 511 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 452
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 451 ttgaagcagctcttgtggtacatggtgttattgacagt 414
>gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60F17
5-PRIME, mRNA sequence
Length = 434
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 254 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 195
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 194 aatgcgctcgagactttaatagcattct 167
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 353 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 294
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 293 ttgaagcagctcttgtggtacatggtgttattgacagt 256
>gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
3-PRIME, mRNA sequence
Length = 636
Score = 135 bits (68), Expect = 1e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 accctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagca 522
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 523 aatgcgctcgagactttaatagcattct 550
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 364 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 423
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 424 ttgaagcagctcttgtggtacatggtgttattgacagt 461
>gb|BQ664619.1|BQ664619 HV04C01u HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
3-PRIME, mRNA sequence
Length = 435
Score = 123 bits (62), Expect = 5e-027
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 314 agcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccctccatggcagcat 373
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||| ||||| || |||||
Sbjct: 374 ttgaagcagctcttgtggtacatggtgttattgacagt 411
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 183 accctctcagttggatagactgt 205
||||||||| |||||||||||||
Sbjct: 413 accctctcaattggatagactgt 435
>gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F1, mRNA sequence
Length = 240
Score = 111 bits (56), Expect = 2e-023
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 155 accctctcaataggatagactgtcgcgctgcatccaaaacatttctctctggtgccagca 96
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 95 aatgcgctcgagactttaatagcattct 68
Score = 93.7 bits (47), Expect = 5e-018
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 21 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 80
||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 236 atgtaattggaagggctgatggtgcaccctccagggcagcatgtgaagcagctcttgtgg 177
Query: 81 tacatagtgtt 91
||||| |||||
Sbjct: 176 tacatggtgtt 166
>gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. vulgare cDNA clone HF17B16
5-PRIME, mRNA sequence
Length = 532
Score = 89.7 bits (45), Expect = 7e-017
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 210 ctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttagtagcattc 269
|||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 532 ctgcatccaaaacatttctctctggtgccagcaaatgcgctcgagactttaatagcattc 473
Query: 270 t 270
|
Sbjct: 472 t 472
>gb|AL509654.1|AL509654 AL509654 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15u 3',
mRNA sequence
Length = 393
Score = 63.9 bits (32), Expect = 4e-009
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctcca 53
||||| |||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 343 agcttgccctcgtgggcnatgtaattcgaagggctgatggtgcaccctcca 393
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 469 agcacttgaagcagctcttgtggta 445
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 6e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
|||||||||||||||||||||||||
Sbjct: 467 agcacttgaagcagctcttgtggta 443
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.015
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||||| |||||||||
Sbjct: 507 agcacttgaagcagcccttgtggta 483
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.015
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||||| |||||||||
Sbjct: 513 agcacttgaagcagcccttgtggta 489
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.015
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||||| |||||||||
Sbjct: 516 agcacttgaagcagcccttgtggta 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,488
Number of Sequences: 312970
Number of extensions: 37488
Number of successful extensions: 9018
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8960
Number of HSP's gapped (non-prelim): 57
length of query: 438
length of database: 175,134,539
effective HSP length: 18
effective length of query: 420
effective length of database: 169,501,079
effective search space: 71190453180
effective search space used: 71190453180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)