BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. v... 712 0.0
gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. v... 712 0.0
gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke devel... 706 0.0
gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA li... 704 0.0
gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, n... 704 0.0
gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. v... 704 0.0
gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthe... 696 0.0
gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, ... 690 0.0
gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. v... 674 0.0
gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-a... 622 e-177
gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, n... 620 e-176
gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. v... 618 e-176
gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA li... 599 e-170
gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA li... 587 e-166
gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA li... 575 e-162
gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA li... 561 e-158
gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. v... 533 e-150
gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA li... 484 e-135
gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. v... 462 e-128
gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. v... 446 e-124
gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subs... 424 e-117
gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. v... 400 e-110
gb|BI950704.1|BI950704 HVSMEl0022M04f Hordeum vulgare spike... 317 4e-085
gb|BM373658.2|BM373658 EBma03_SQ002_E03_R maternal, 8 DPA, ... 295 1e-078
gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subs... 285 1e-075
gb|BQ664619.1|BQ664619 HV04C01u HV Hordeum vulgare subsp. v... 242 2e-062
gb|BU970112.1|BU970112 HB13K08r BC Hordeum vulgare subsp. v... 228 3e-058
gb|AL509654.1|AL509654 AL509654 Hordeum vulgare Barke devel... 139 2e-031
gb|BQ659649.1|BQ659649 HF01D07w HF Hordeum vulgare subsp. v... 62 4e-008
gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow st... 50 1e-004
gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow st... 50 1e-004
gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow st... 42 0.033
gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow st... 42 0.033
gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow st... 42 0.033
>gb|BQ460388.1|BQ460388 HA09M17r HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
5-PRIME, mRNA sequence
Length = 635
Score = 712 bits (359), Expect = 0.0
Identities = 503/551 (91%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 612 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 553
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 552 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 493
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 492 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 433
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 432 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 373
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 372 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 313
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 312 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 253
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 252 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 193
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagc 803
||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 192 cccttgcagtggtggcacctgaagcaggccttgtggtagacccggttgtcggcggtgagc 133
Query: 804 ttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaag 863
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 132 ttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaac 73
Query: 864 gaggtcgccat 874
|||||||||||
Sbjct: 72 gaggtcgccat 62
>gb|BQ464047.1|BQ464047 HF01D07T HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
5-PRIME, mRNA sequence
Length = 679
Score = 712 bits (359), Expect = 0.0
Identities = 503/551 (91%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 657 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 598
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 597 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 538
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 537 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 478
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 477 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 418
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 417 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 358
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 357 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 298
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 297 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 238
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagc 803
||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 237 cccttgcagtggtggcacctgaagcaggccttgtggtagacccggttgtcggcggtgagc 178
Query: 804 ttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaag 863
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 177 ttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaac 118
Query: 864 gaggtcgccat 874
|||||||||||
Sbjct: 117 gaggtcgccat 107
>gb|AL506237.1|AL506237 AL506237 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15T 5',
mRNA sequence
Length = 697
Score = 706 bits (356), Expect = 0.0
Identities = 497/544 (91%)
Strand = Plus / Minus
Query: 330 gtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagctggatg 389
||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||||| ||
Sbjct: 592 gtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagctgggtg 533
Query: 390 tggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatggtg 449
||||||||||||||| | ||||| |||||||| || ||||| || |||||||||||||||
Sbjct: 532 tggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctgatggtg 473
Query: 450 caccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtgacc 509
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 472 caccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgacagtaacc 413
Query: 510 ctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaag 569
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 412 ctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagcaaat 353
Query: 570 gcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgacaaccttg 629
||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 352 gcgctcgagactttaatagcattctcattcccaacattcctttctggcttgacaaccttt 293
Query: 630 ggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtga 689
||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||
Sbjct: 292 ggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtcaaagtga 233
Query: 690 ggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttg 749
||||||||||||||||| || ||||| |||||||| || |||||||||||||||||||||
Sbjct: 232 ggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtgcccttg 173
Query: 750 cagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtcc 809
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 172 cagtggtggcacctgaagcaggccttgtggtagacccggttgtcggcggtgagcttgtcg 113
Query: 810 acaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaaggaggtc 869
|| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 112 acgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaacgaggtc 53
Query: 870 gcca 873
||||
Sbjct: 52 gcca 49
>gb|BJ463425.1|BJ463425 BJ463425 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 5', mRNA sequence
Length = 634
Score = 704 bits (355), Expect = 0.0
Identities = 493/539 (91%)
Strand = Plus / Minus
Query: 336 tcgtggtcattctcaagctggctgaagttccccttctccttgatcagctggatgtggtgg 395
||||| || ||||| ||||||||||| || |||||||| |||||||||||| ||||||||
Sbjct: 630 tcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagctgggtgtggtgg 571
Query: 396 tgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccct 455
||||||||| | ||||| |||||||| || ||||| || |||||||||||||||||||||
Sbjct: 570 tgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccct 511
Query: 456 ccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtgaccctctca 515
||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 510 ccatggcagcatttgaagcagctcttgtggtacatggtgttattgacagtaaccctctca 451
Query: 516 gttggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaaggcgctt 575
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 450 attggatagactgtcttgctgcatccaaaacatttctctctggtgccagcaaatgcgctc 391
Query: 576 gagactttagtagcattctcattcccaacgtttctttctggcttgacaaccttgggagtt 635
||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 390 gagactttaatagcattctcattcccaacattcctttctggcttgacaacctttggagtc 331
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 330 ccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtcaaagtgaggcctg 271
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcagtgg 755
||||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct: 270 cagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtgcccttgcagtgg 211
Query: 756 tggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccacaagg 815
||||| | |||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 210 tggcacctgaagcaggccttgtggtagacccggttgtcggcggtgagcttgtcgacgagg 151
Query: 816 tacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaaggaggtcgccat 874
||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 150 tacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaacgaggtcgccat 92
>gb|BM376791.2|BM376791 EBem05_SQ003_E02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_E02 5', mRNA sequence
Length = 646
Score = 704 bits (355), Expect = 0.0
Identities = 502/551 (91%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 611 tgtgacgtcttgtcgtgatcgttctcgagctggctgaattttcccttctctttgatcagc 552
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 551 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 492
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 491 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 432
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 372
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 371 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 312
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 311 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 252
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 251 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 192
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagc 803
||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||
Sbjct: 191 cccttgcagtggtggcacctgaagcaggccttgtggtggacccggttgtcggcggtgagc 132
Query: 804 ttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaag 863
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 131 ttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaac 72
Query: 864 gaggtcgccat 874
|||||||||||
Sbjct: 71 gaggtcgccat 61
>gb|BU997945.1|BU997945 HI09I01r HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
5-PRIME, mRNA sequence
Length = 584
Score = 704 bits (355), Expect = 0.0
Identities = 493/539 (91%)
Strand = Plus / Minus
Query: 336 tcgtggtcattctcaagctggctgaagttccccttctccttgatcagctggatgtggtgg 395
||||| || ||||| ||||||||||| || |||||||| |||||||||||| ||||||||
Sbjct: 583 tcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagctgggtgtggtgg 524
Query: 396 tgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccct 455
||||||||| | ||||| |||||||| || ||||| || |||||||||||||||||||||
Sbjct: 523 tgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctgatggtgcaccct 464
Query: 456 ccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtgaccctctca 515
||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 463 ccatggcagcatttgaagcagctcttgtggtacatggtgttattgacagtaaccctctca 404
Query: 516 gttggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaaggcgctt 575
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 403 attggatagactgtcttgctgcatccaaaacatttctctctggtgccagcaaatgcgctc 344
Query: 576 gagactttagtagcattctcattcccaacgtttctttctggcttgacaaccttgggagtt 635
||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 343 gagactttaatagcattctcattcccaacattcctttctggcttgacaacctttggagtc 284
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 283 ccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtcaaagtgaggcctg 224
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttgcagtgg 755
||||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct: 223 cagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtgcccttgcagtgg 164
Query: 756 tggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgagcttgtccacaagg 815
||||| | |||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 163 tggcacctgaagcaggccttgtggtagacccggttgtcggcggtgagcttgtcgacgagg 104
Query: 816 tacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaaggaggtcgccat 874
||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 103 tacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaacgaggtcgccat 45
>gb|BQ764615.1|BQ764615 EBca01_SQ004_K11_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K11 5', mRNA sequence
Length = 746
Score = 696 bits (351), Expect = 0.0
Identities = 502/551 (91%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 325 gtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagct 384
|||| ||||| ||||| || ||||| ||||||||||| || |||||||| ||||||||||
Sbjct: 555 gtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagct 496
Query: 385 ggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctga 444
|| ||||||||||||||||| | ||||| |||||||| || ||||| || ||||||||||
Sbjct: 495 gggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctga 436
Query: 445 tggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaacag 504
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 435 tggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgacag 376
Query: 505 tgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccag 564
| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 375 taaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccag 316
Query: 565 caaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgacaa 624
|||| ||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct: 315 caaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgacaa 256
Query: 625 ccttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcga 684
|||| ||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| |
Sbjct: 255 cctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtcaa 196
Query: 685 agtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgc 744
|||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||
Sbjct: 195 agtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtgc 136
Query: 745 ccttgcagtggtggcagcggaagcaggccttgtggtagatgcgg-ttgtcggcggtgagc 803
|||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 135 ccttgcagtggtggcacctgaagcaggccttgtggtagacccggattgtcggcggtgagc 76
Query: 804 ttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaag 863
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 75 ttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaac 16
Query: 864 gaggtcgccat 874
|||||||||||
Sbjct: 15 gaggtcgccat 5
>gb|BM373914.2|BM373914 EBma03_SQ003_B17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_B17 5', mRNA sequence
Length = 631
Score = 690 bits (348), Expect = 0.0
Identities = 502/552 (90%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||| ||||||| || |||||||| |||||||||
Sbjct: 615 tgtgacgtcttgtcgtgatcgttctcgagcgggctgaaatttcccttctctttgatcagc 556
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 555 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 496
Query: 444 atggtgcaccctcc-atggcagcacttgaagcagctcttgtggtacatagtgttattaac 502
|||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct: 495 atggtgcaccctcccatggcagcatttgaagcagctcttgtggtacatggtgttattgac 436
Query: 503 agtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcc 562
||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 agtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcc 376
Query: 563 agcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgac 622
|||||| ||||| ||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct: 375 agcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgac 316
Query: 623 aaccttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtc 682
|||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 315 aacctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtc 256
Query: 683 gaagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggt 742
||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct: 255 aaagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggt 196
Query: 743 gcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcggtgag 802
|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct: 195 gcccttgcagtggtggcaccagaagcaggccttgtggtagacccggttgtcggcggtgag 136
Query: 803 cttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtcccctggaa 862
|||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 135 cttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtcccctggaa 76
Query: 863 ggaggtcgccat 874
|||||||||||
Sbjct: 75 cgaggtcgccat 64
>gb|BQ471999.1|BQ471999 HV04C01r HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
5-PRIME, mRNA sequence
Length = 572
Score = 674 bits (340), Expect = 0.0
Identities = 460/500 (92%)
Strand = Plus / Minus
Query: 375 ttgatcagctggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagtta 434
|||||||||||| ||||||||||||||||| | ||||| |||||||| || ||||| ||
Sbjct: 570 ttgatcagctgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattc 511
Query: 435 gaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtg 494
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 510 gaagggctgatggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtg 451
Query: 495 ttattaacagtgaccctctcagttggatagactgtcttgctgcatccaacacatttctct 554
||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 ttattgacagtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctct 391
Query: 555 ctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttct 614
|||||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||
Sbjct: 390 ctggtgccagcaaatgcgctcgagactttaatagcattctcattcccaacattcctttct 331
Query: 615 ggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaac 674
|||||||||||||| ||||| ||||||||||||||||| | |||||| |||||||||||
Sbjct: 330 ggcttgacaacctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaag 271
Query: 675 agctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagc 734
|||||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||||
Sbjct: 270 agctggtcaaagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagc 211
Query: 735 ttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcg 794
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct: 210 ttgagggtgcccttgcagtggtggcacctgaagcaggccttgtggtagacccggttgtcg 151
Query: 795 gcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtc 854
|||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 150 gcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtc 91
Query: 855 ccctggaaggaggtcgccat 874
|||||||| |||||||||||
Sbjct: 90 ccctggaacgaggtcgccat 71
>gb|AW982205.2|AW982205 HVSMEg0002E10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002E10f, mRNA sequence
Length = 828
Score = 622 bits (314), Expect = e-177
Identities = 463/510 (90%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 366 cccttctccttgatcagctggatgtggtggtgcttgcagtacagcttcccct-cgtgcgc 424
|||||||| |||| ||||||| ||||||||||||||||| | ||||| |||| |||| ||
Sbjct: 680 cccttctctttgaccagctgggtgtggtggtgcttgcagaagagcttgcccttcgtgggc 621
Query: 425 aatgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtg 484
||||| || |||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 620 gatgta-ttcgaagggtgaatggtgcaacctccatggcagcatttgaagcagctcttgtg 562
Query: 485 gtacatagtgttattaacagtgaccctctcagttggatagactgtcttgctgcatccaac 544
|||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gtacatggtgttattgacagtaaccctctcaattggatagactgtcttgctgcatccaaa 502
Query: 545 acatttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaac 604
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 501 acatttctctctggtgccagcaaatgcgctcgagactttaatagcattctcattcccaac 442
Query: 605 gtttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgt 664
|| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||| ||
Sbjct: 441 attcctttctggcttgacaacctttggagtcccttcgaagctcttgtcgaggctcccagt 382
Query: 665 cctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgta 724
||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 381 cctcttgaagagctggtcaaagtgaggcctgcagtagagcaccccttcgaacgagttgta 322
Query: 725 gttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagat 784
|| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 321 attcgcgagcttgagggtgcccttgcagtggtggcacctgaagcaggccttgtggtagac 262
Query: 785 gcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcactt 844
||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 261 ccggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcgttgcactt 202
Query: 845 ggtggtcgtcccctggaaggaggtcgccat 874
||| |||||||||||||| |||||||||||
Sbjct: 201 ggtcgtcgtcccctggaacgaggtcgccat 172
>gb|BM376958.2|BM376958 EBem05_SQ003_L10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_L10 5', mRNA sequence
Length = 464
Score = 620 bits (313), Expect = e-176
Identities = 415/449 (92%)
Strand = Plus / Minus
Query: 426 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 485
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 457 atgtaattcgaagggctgatggtgcaccctccatggcagcatttgaagcagctcttgtgg 398
Query: 486 tacatagtgttattaacagtgaccctctcagttggatagactgtcttgctgcatccaaca 545
||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 397 tacatggtgttattgacagtaaccctctcaattggatagactgtcttgctgcatccaaaa 338
Query: 546 catttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacg 605
||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 337 catttctctctggtgccagcaaatgcgctcgagactttaatagcattctcattcccaaca 278
Query: 606 tttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgtc 665
|| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||| |||
Sbjct: 277 ttcctttctggcttgacaacctttggagtcccttcgaagctcttgtcgaggctcccagtc 218
Query: 666 ctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgtag 725
|||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 217 ctcttgaagagctggtcaaagtgaggcctgcagtagagcaccccttcgaacgagttgtaa 158
Query: 726 ttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatg 785
|| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 157 ttcgcgagcttgagggtgcccttgcagtggtggcacctgaagcaggccttgtggtagacc 98
Query: 786 cggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttg 845
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct: 97 cggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttg 38
Query: 846 gtggtcgtcccctggaaggaggtcgccat 874
|| |||||||||||||| |||||||||||
Sbjct: 37 gtcgtcgtcccctggaacgaggtcgccat 9
>gb|BU988629.1|BU988629 HF18D11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18D11
5-PRIME, mRNA sequence
Length = 631
Score = 618 bits (312), Expect = e-176
Identities = 408/440 (92%)
Strand = Plus / Minus
Query: 435 gaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtg 494
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 631 gaagggctgatggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtg 572
Query: 495 ttattaacagtgaccctctcagttggatagactgtcttgctgcatccaacacatttctct 554
||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 571 ttattgacagtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctct 512
Query: 555 ctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttct 614
|||||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||
Sbjct: 511 ctggtgccagcaaatgcgctcgagactttaatagcattctcattcccaacattcctttct 452
Query: 615 ggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaac 674
|||||||||||||| ||||| ||||||||||||||||| | |||||| |||||||||||
Sbjct: 451 ggcttgacaacctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaag 392
Query: 675 agctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagc 734
|||||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||||
Sbjct: 391 agctggtcaaagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagc 332
Query: 735 ttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcg 794
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct: 331 ttgagggtgcccttgcagtggtggcacctgaagcaggccttgtggtagacccggttgtcg 272
Query: 795 gcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgtc 854
|||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 271 gcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcgttgcacttggtcgtcgtc 212
Query: 855 ccctggaaggaggtcgccat 874
|||||||| |||||||||||
Sbjct: 211 ccctggaacgaggtcgccat 192
>gb|AV919448.1|AV919448 AV919448 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 3', mRNA sequence
Length = 687
Score = 599 bits (302), Expect = e-170
Identities = 431/474 (90%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 213 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 272
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 273 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 332
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 333 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 392
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 393 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 452
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 453 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 512
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 513 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 572
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 573 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 632
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtcggcg 797
||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 633 cccttgcagtggtggcacctgaagcaggccttgtggtagacccggttgtcggcg 686
>gb|AV918472.1|AV918472 AV918472 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 3', mRNA sequence
Length = 668
Score = 587 bits (296), Expect = e-166
Identities = 419/460 (91%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 203 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 262
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 263 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 322
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 323 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 382
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 442
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 443 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 502
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 503 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 562
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 563 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 622
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggtaga 783
||||||||||||||||| | ||||||||||||||||||||
Sbjct: 623 cccttgcagtggtggcacctgaagcaggccttgtggtaga 662
>gb|BJ465856.1|BJ465856 BJ465856 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k10 3', mRNA sequence
Length = 658
Score = 575 bits (290), Expect = e-162
Identities = 415/457 (90%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 202 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 261
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 262 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 321
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 322 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 381
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 441
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 442 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 501
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 502 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 561
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || || || |||||||| || |||||||||||||||
Sbjct: 562 aagtgaggcctgcagtagagcaccccttcnaacgagttgtaattcgcgagcttgagggtg 621
Query: 744 cccttgcagtggtggcagcggaagcaggccttgtggt 780
||||||||||||||||| | |||||||||||||||||
Sbjct: 622 cccttgcagtggtggcacctgaagcaggccttgtggt 658
>gb|AV913180.1|AV913180 AV913180 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21c22 5', mRNA sequence
Length = 637
Score = 561 bits (283), Expect = e-158
Identities = 406/447 (90%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 447 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 388
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 387 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 328
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 327 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 268
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 208
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 207 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 148
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct: 147 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtca 88
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtg 743
||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 87 aagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtg 28
Query: 744 cccttgcagtggtggcagcggaagcag 770
||||||||||||||||| | |||||||
Sbjct: 27 cccttgcagtggtggcacctgaagcag 1
>gb|CA027891.1|CA027891 HZ60F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60F17
5-PRIME, mRNA sequence
Length = 434
Score = 533 bits (269), Expect = e-150
Identities = 383/421 (90%)
Strand = Plus / Minus
Query: 330 gtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagctggatg 389
||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||||| ||
Sbjct: 431 gtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagctgggtg 372
Query: 390 tggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatggtg 449
||||||||||||||| | ||||| |||||||| || ||||| || |||||||||||||||
Sbjct: 371 tggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctgatggtg 312
Query: 450 caccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtgacc 509
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 311 caccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgacagtaacc 252
Query: 510 ctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagcaaag 569
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 ctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgccagcaaat 192
Query: 570 gcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgacaaccttg 629
||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 191 gcgctcgagactttaatagcattctcattcccaacattcctttctggcttgacaaccttt 132
Query: 630 ggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtga 689
||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||
Sbjct: 131 ggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctggtcaaagtga 72
Query: 690 ggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagggtgcccttg 749
||||||||||||||||| || ||||| |||||||| || |||||||||||||||||||||
Sbjct: 71 ggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagcttgagggtgcccttg 12
Query: 750 c 750
|
Sbjct: 11 c 11
>gb|AV914412.1|AV914412 AV914412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6b09 5', mRNA sequence
Length = 574
Score = 484 bits (244), Expect = e-135
Identities = 396/440 (90%), Gaps = 5/440 (1%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 448 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 389
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 388 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 329
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 328 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 269
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 268 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 209
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 208 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 149
Query: 624 accttgggagttccttcgaagct-cttgtccaagct-ccctgtcct-cttgaacagctgg 680
||||| ||||| ||||||||||| |||||| | ||| ||| ||||| |||||| ||||||
Sbjct: 148 acctttggagtcccttcgaagctncttgtcgaggctncccagtcctncttgaagagctgg 89
Query: 681 tcgaagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgagcttgagg 740
|| ||||||||||||||||||||||| || ||||| |||||||| || |||||| |||||
Sbjct: 88 tcaaagtgaggcctgcagtagagcaccccttcgaacgagttgtaattcgcgagc-tgagg 30
Query: 741 gtgcccttgcagtggtggca 760
|||||| |||||||||||||
Sbjct: 29 gtgccc-tgcagtggtggca 11
>gb|BU988248.1|BU988248 HF17B16r HF Hordeum vulgare subsp. vulgare cDNA clone HF17B16
5-PRIME, mRNA sequence
Length = 532
Score = 462 bits (233), Expect = e-128
Identities = 314/341 (92%)
Strand = Plus / Minus
Query: 534 ctgcatccaacacatttctctctggtgccagcaaaggcgcttgagactttagtagcattc 593
|||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 532 ctgcatccaaaacatttctctctggtgccagcaaatgcgctcgagactttaatagcattc 473
Query: 594 tcattcccaacgtttctttctggcttgacaaccttgggagttccttcgaagctcttgtcc 653
||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 472 tcattcccaacattcctttctggcttgacaacctttggagtcccttcgaagctcttgtcg 413
Query: 654 aagctccctgtcctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcg 713
| |||||| ||||||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 412 aggctcccagtcctcttgaagagctggtcaaagtgaggcctgcagtagagcaccccttcg 353
Query: 714 aaggagttgtagttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggcc 773
|| |||||||| || |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 352 aacgagttgtaattcgcgagcttgagggtgcccttgcagtggtggcacctgaagcaggcc 293
Query: 774 ttgtggtagatgcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcag 833
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 292 ttgtggtagacccggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcag 233
Query: 834 gcggtgcacttggtggtcgtcccctggaaggaggtcgccat 874
||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 232 gcgttgcacttggtcgtcgtcccctggaacgaggtcgccat 192
>gb|CB859146.1|CB859146 HI09I01w HI Hordeum vulgare subsp. vulgare cDNA clone HI09I01
3-PRIME, mRNA sequence
Length = 636
Score = 446 bits (225), Expect = e-124
Identities = 324/357 (90%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 280 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 339
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 340 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 399
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 400 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 459
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 460 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 519
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 520 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 579
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctgg 680
||||| ||||| ||||||||||||||||| | |||||| ||||||||||| ||||||
Sbjct: 580 acctttggagtcccttcgaagctcttgtcgaggctcccagtcctcttgaagagctgg 636
>gb|AJ462919.1|AJ462919 AJ462919 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F2, mRNA sequence
Length = 420
Score = 424 bits (214), Expect = e-117
Identities = 307/338 (90%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 338 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 279
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 278 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 219
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 218 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 159
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 158 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 99
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 98 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 39
Query: 624 accttgggagttccttcgaagctcttgtccaagctccc 661
||||| ||||| ||||||||||||||||| | ||||||
Sbjct: 38 acctttggagtcccttcgaagctcttgtcgaggctccc 1
>gb|BQ657073.1|BQ657073 HA09M17u HA Hordeum vulgare subsp. vulgare cDNA clone HA09M17
3-PRIME, mRNA sequence
Length = 550
Score = 400 bits (202), Expect = e-110
Identities = 289/318 (90%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 233 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 292
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 293 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 352
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 353 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 412
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 413 gtaaccctctcaattggatagactgtcttgctgcatccaaaacatttctctctggtgcca 472
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct: 473 gcaaatgcgctcgagactttaatagcattctcattcccaacattcctttctggcttgaca 532
Query: 624 accttgggagttccttcg 641
||||| ||||| ||||||
Sbjct: 533 acctttggagtcccttcg 550
>gb|BI950704.1|BI950704 HVSMEl0022M04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0022M04f, mRNA sequence
Length = 942
Score = 317 bits (160), Expect = 4e-085
Identities = 253/284 (89%)
Strand = Plus / Minus
Query: 546 catttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacg 605
||||||||| ||||||||| || ||| | ||||||||| ||||||||||||| |||||
Sbjct: 285 catttctctggggtgccagcgaatgcgttggagactttaatagcattctcattgccaaca 226
Query: 606 tttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgtc 665
|| || ||||||||||||||| ||||| ||||||||||||||||| | |||||| |||
Sbjct: 225 ttcgattgtggcttgacaacctttggagtcccttcgaagctcttgtcgaggctcccagtc 166
Query: 666 ctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgtag 725
|||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 165 ctcttgaagagctggtcaaagtgaggcctgcagtagagcaccccttcgaacgagttgtaa 106
Query: 726 ttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatg 785
|| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 105 ttcgcgagcttgagggtgcccttgcagtggtggcacctgaagcaggccttgtggtagacc 46
Query: 786 cggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtc 829
||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 45 cggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtc 2
>gb|BM373658.2|BM373658 EBma03_SQ002_E03_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ002_E03 5', mRNA sequence
Length = 281
Score = 295 bits (149), Expect = 1e-078
Identities = 200/217 (92%)
Strand = Plus / Minus
Query: 658 tccctgtcctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaagg 717
|||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| |
Sbjct: 280 tcccagtcctcttgaagagctggtcaaagtgaggcctgcagtagagcaccccttcgaacg 221
Query: 718 agttgtagttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgt 777
||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 220 agttgtaattcgcgagcttgagggtgcccttgcagtggtggcaccagaagcaggccttgt 161
Query: 778 ggtagatgcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcgg 837
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 160 ggtagacccggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgcaggcgt 101
Query: 838 tgcacttggtggtcgtcccctggaaggaggtcgccat 874
|||||||||| |||||||||||||| |||||||||||
Sbjct: 100 tgcacttggtcgtcgtcccctggaacgaggtcgccat 64
>gb|AJ460964.1|AJ460964 AJ460964 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200028B08F1, mRNA sequence
Length = 240
Score = 285 bits (144), Expect = 1e-075
Identities = 213/236 (90%)
Strand = Plus / Minus
Query: 426 atgtagttagaagggctgatggtgcaccctccatggcagcacttgaagcagctcttgtgg 485
||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 236 atgtaattggaagggctgatggtgcaccctccagggcagcatgtgaagcagctcttgtgg 177
Query: 486 tacatagtgttattaacagtgaccctctcagttggatagactgtcttgctgcatccaaca 545
||||| ||||||| ||||| ||||||||| | |||||||||||| ||||||||||| |
Sbjct: 176 tacatggtgttatggacagtaaccctctcaataggatagactgtcgcgctgcatccaaaa 117
Query: 546 catttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacg 605
||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 116 catttctctctggtgccagcaaatgcgctcgagactttaatagcattctcattcccaaca 57
Query: 606 tttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctccc 661
|| |||||||||||||||||||| ||||| ||||||||||||||||| | ||||||
Sbjct: 56 ttcctttctggcttgacaacctttggagtcccttcgaagctcttgtcgaggctccc 1
>gb|BQ664619.1|BQ664619 HV04C01u HV Hordeum vulgare subsp. vulgare cDNA clone HV04C01
3-PRIME, mRNA sequence
Length = 435
Score = 242 bits (122), Expect = 2e-062
Identities = 185/206 (89%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 230 tgtgacgtcttgtcgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 289
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 290 tgggtgtggtggtgcttgcagaagagcttgccctcgtgggcgatgtaattcgaagggctg 349
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 350 atggtgcaccctccatggcagcatttgaagcagctcttgtggtacatggtgttattgaca 409
Query: 504 gtgaccctctcagttggatagactgt 529
|| ||||||||| |||||||||||||
Sbjct: 410 gtaaccctctcaattggatagactgt 435
>gb|BU970112.1|BU970112 HB13K08r BC Hordeum vulgare subsp. vulgare cDNA clone HB13K08
5-PRIME, mRNA sequence
Length = 380
Score = 228 bits (115), Expect = 3e-058
Identities = 151/163 (92%)
Strand = Plus / Minus
Query: 712 cgaaggagttgtagttggcgagcttgagggtgcccttgcagtggtggcagcggaagcagg 771
|||| |||||||| || |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 380 cgaacgagttgtaattcgcgagcttgagggtgcccttgcagtggtggcacctgaagcagg 321
Query: 772 ccttgtggtagatgcggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgc 831
|||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 320 ccttgtggtagacccggttgtcggcggtgagcttgtcgacgaggtacaccgtcttgtcgc 261
Query: 832 aggcggtgcacttggtggtcgtcccctggaaggaggtcgccat 874
||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 260 aggcgttgcacttggtcgtcgtcccctggaacgaggtcgccat 218
>gb|AL509654.1|AL509654 AL509654 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02H15u 3',
mRNA sequence
Length = 393
Score = 139 bits (70), Expect = 2e-031
Identities = 118/135 (87%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| ||| | || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 259 tgtgacgtcttgtcgngatcgttctcgagctggctgaaatttcccttctctttgatcagc 318
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
||| ||||||||||||||||| | ||||| |||||||| || ||||| || |||||||||
Sbjct: 319 tgggtgtggtggtgcttgcagaanagcttgccctcgtgggcnatgtaattcgaagggctg 378
Query: 444 atggtgcaccctcca 458
|||||||||||||||
Sbjct: 379 atggtgcaccctcca 393
>gb|BQ659649.1|BQ659649 HF01D07w HF Hordeum vulgare subsp. vulgare cDNA clone HF01D07
3-PRIME, mRNA sequence
Length = 309
Score = 61.9 bits (31), Expect = 4e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||| ||||| |||| || ||||| ||||||||||| || |||||||| |||||||||
Sbjct: 239 tgtgacgtcttgccgtgatcgttctcgagctggctgaaatttcccttctctttgatcagc 298
Query: 384 tggatgtggtg 394
||| |||||||
Sbjct: 299 tgggtgtggtg 309
>gb|BM442464.2|BM442464 EBan01_SQ003_E04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E04 5', mRNA sequence
Length = 507
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 469 agcacttgaagcagctcttgtggta 445
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 654 aagctccctgtcctcttgaacagctggtcgaagtgaggcctgcagtagag 703
|||||||||||| |||||| ||||| |||||||| | | ||||||||||
Sbjct: 284 aagctccctgtctccttgaagagctgctcgaagtgcgtcttgcagtagag 235
>gb|BQ753427.1|BQ753427 EBan01_SQ004_D21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D21 5', mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
|||||||||||||||||||||||||
Sbjct: 467 agcacttgaagcagctcttgtggta 443
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 654 aagctccctgtcctcttgaacagctggtcgaagtgaggcctgcagtagag 703
|||||||||||| |||||| ||||| |||||||| | | ||||||||||
Sbjct: 282 aagctccctgtctccttgaagagctgctcgaagtgcgtcttgcagtagag 233
>gb|BM442006.2|BM442006 EBan01_SQ001_K04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_K04 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.033
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
||||||||||||||| |||||||||
Sbjct: 507 agcacttgaagcagcccttgtggta 483
>gb|BQ753289.1|BQ753289 EBan01_SQ001_D10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_D10 5', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.033
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
||||||||||||||| |||||||||
Sbjct: 513 agcacttgaagcagcccttgtggta 489
>gb|BQ764354.1|BQ764354 EBan01_SQ005_I18_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_I18 5', mRNA sequence
Length = 598
Score = 42.1 bits (21), Expect = 0.033
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 463 agcacttgaagcagctcttgtggta 487
||||||||||||||| |||||||||
Sbjct: 516 agcacttgaagcagcccttgtggta 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,428
Number of Sequences: 312970
Number of extensions: 117428
Number of successful extensions: 33865
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33798
Number of HSP's gapped (non-prelim): 61
length of query: 950
length of database: 175,134,539
effective HSP length: 19
effective length of query: 931
effective length of database: 169,188,109
effective search space: 157514129479
effective search space used: 157514129479
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)