BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804958.2.1
(1118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 505 e-142
gb|BF265852.2|BF265852 HV_CEa0013I03f Hordeum vulgare seedl... 420 e-116
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 396 e-109
gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 ... 394 e-108
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 394 e-108
gb|BG417425.2|BG417425 HVSMEk0017E11f Hordeum vulgare testa... 392 e-108
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 357 5e-097
gb|BU975928.1|BU975928 HB32L19r BC Hordeum vulgare subsp. v... 353 8e-096
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 343 8e-093
gb|CA030641.1|CA030641 HX07K22r HX Hordeum vulgare subsp. v... 319 1e-085
gb|BU978254.1|BU978254 HA12N07r HA Hordeum vulgare subsp. v... 311 3e-083
gb|BG414215.1|BG414215 HVSMEk0001E02f Hordeum vulgare testa... 291 3e-077
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 281 2e-074
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 281 2e-074
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 280 1e-073
gb|BG417650.1|BG417650 HVSMEk0019A03f Hordeum vulgare testa... 242 2e-062
gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. v... 204 5e-051
gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. v... 172 2e-041
gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA li... 153 1e-035
gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgar... 141 6e-032
gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA li... 127 8e-028
gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA li... 123 1e-026
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 121 5e-026
gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. v... 117 8e-025
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 88 7e-016
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 80 2e-013
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 78 7e-013
gb|AL511938.1|AL511938 AL511938 Hordeum vulgare Barke devel... 74 1e-011
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 74 1e-011
gb|BM101164.2|BM101164 EBpi01_SQ003_B06_R pistil, 1 DPA, no... 72 4e-011
gb|BU978255.1|BU978255 HA12N07u HA Hordeum vulgare subsp. v... 68 7e-010
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 66 3e-009
gb|AL501384.1|AL501384 AL501384 Hordeum vulgare Barke roots... 58 7e-007
gb|BG418771.1|BG418771 HVSMEk0024G02f Hordeum vulgare testa... 56 3e-006
gb|BG343249.1|BG343249 HVSMEg0005D14f Hordeum vulgare pre-a... 52 4e-005
gb|BQ663779.1|BQ663779 HU04A08u HU Hordeum vulgare subsp. v... 48 6e-004
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 505 bits (255), Expect = e-142
Identities = 410/462 (88%)
Strand = Plus / Plus
Query: 327 cagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccat 386
||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 11 cagggatggtgtcagcgagggacagttctaccaagttctgttgtttgaacttgatgccat 70
Query: 387 tagaaaggcctgtgcgtcattggagtctgactaccagcctccagttacttttgtcgtggt 446
||| ||||||||||| || |||||| | | || |||||||||||||||||||| || ||
Sbjct: 71 taggaaggcctgtgcatccttggagccaaattatcagcctccagttacttttgtggttgt 130
Query: 447 ccagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcga 506
|||| ||||||| ||||| ||| | |||||||| |||||||||||| | ||| |||||||
Sbjct: 131 ccagaagcgtcaccacactaggctttttgctaacaatcacaatgatcagcgtactgtcga 190
Query: 507 taaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactga 566
|| |||||||||||||||||||||||| || || || ||||||||||||||||| || ||
Sbjct: 191 tagaagcgggaacatactgcctggcaccgttgttgattcgaagatctgccatccgacaga 250
Query: 567 gtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccatta 626
|| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 251 attcgatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccacta 310
Query: 627 ccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaa 686
|||||||| ||||| |||||||| ||||| ||||||| ||||||||||||||| |||||
Sbjct: 311 tcatgttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaa 370
Query: 687 cttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatacta 746
| |||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 371 cctgtgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatacta 430
Query: 747 tgctcacctggcagccttccgagctcggttctacatggagcc 788
||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 431 tgcccatctggcagccttccgggctcggttctacatggagcc 472
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 553 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 612
Query: 923 tctactgctaag 934
| ||||||||||
Sbjct: 613 tttactgctaag 624
>gb|BF265852.2|BF265852 HV_CEa0013I03f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013I03f, mRNA sequence
Length = 751
Score = 420 bits (212), Expect = e-116
Identities = 474/563 (84%), Gaps = 1/563 (0%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | || || || |||||||||||||| || || || |||||||| ||
Sbjct: 187 tgtcagtgacagaccaacaataatatttggtgctgatgttacacaccctcatcctggaga 246
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||| || ||
Sbjct: 247 agattccagtccttccattgctgctgtggttgcttcccaagactggcctgaggtcactaa 306
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||||||||| || || || ||||||||| | |||||||||||||||| ||
Sbjct: 307 gtatgcaggattagttagcgcccaagcccataggcaagaattgatacaggatctttttaa 366
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||||||| |||| || ||||| ||||||||||||||| ||||||||||||
Sbjct: 367 agtatggcaagatccccaaagaggaactgtgactggtggcatgatcaaggagcttctcat 426
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| ||||||||| ||||||||||| |||| |||||||| ||||||||||| ||
Sbjct: 427 ttctttcaagagggcaaccggacagaaaccccagagaatcatattttacagggatggtgt 486
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct: 487 cagcgagggccagttctatcaagttcttctgtatgaacttgatgccattagaaaggcatg 546
Query: 399 tgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtca 458
|||||| |||||| | | ||||| || |||||||||||||| || |||||| |||| ||
Sbjct: 547 tgcgtccttggagcccaattaccaacccccagttacttttgtagttgtccagaagcggca 606
Query: 459 tcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaa 518
|||||||||| | ||||||||||| ||||||||| | ||| |||| |||| |||||| ||
Sbjct: 607 tcacaccaggctttttgctaataaccacaatgatcaccgtactgttgatagaagcggaaa 666
Query: 519 catactgcctggcactgtggtggactcgaagatctgccat-ccaactgagtttgatttct 577
|||||||||||| ||||| || || || ||||| |||||| ||||| || |||| ||||
Sbjct: 667 catactgcctggaactgttgttgattcaaagatttgccatcccaaccgattttggattct 726
Query: 578 acctgtgcagccatgctggcatt 600
|| |||| ||||| ||| |||||
Sbjct: 727 acttgtgtagccacgcttgcatt 749
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 396 bits (200), Expect = e-109
Identities = 319/359 (88%)
Strand = Plus / Plus
Query: 430 gttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaat 489
||||||||||| || |||||| ||||||| ||||| ||| | |||||||| |||||||||
Sbjct: 1 gttacttttgtggttgtccagaagcgtcaccacactaggctttttgctaacaatcacaat 60
Query: 490 gataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaag 549
||| | ||| ||||||||| |||||||||||||||||||||||| || || || ||||||
Sbjct: 61 gatcagcgtactgtcgatagaagcgggaacatactgcctggcaccgttgttgattcgaag 120
Query: 550 atctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaaca 609
||||||||||| || || || ||||||||| |||| ||||||||||||||||||||||||
Sbjct: 121 atctgccatccgacagaattcgatttctacttgtgtagccatgctggcattcagggaaca 180
Query: 610 agccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttg 669
||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||| ||||
Sbjct: 181 agccggcctgcccactatcatgttctctgggacgagaacaaatttactgctgatgagttg 240
Query: 670 caaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgatt 729
||||||||||| |||||| |||| |||||||||||| | ||||| ||||| |||||||||
Sbjct: 241 caaactctcacaaacaacctgtgctacacgtatgctcgatgcacccgctctgtatcgatt 300
Query: 730 gttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 301 gttcctcctgcatactatgcccatctggcagccttccgggctcggttctacatggagcc 359
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 441 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 500
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 501 tttactgctaaga 513
>gb|BE196054.2|BE196054 HVSMEh0091D21f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091D21f, mRNA sequence
Length = 914
Score = 394 bits (199), Expect = e-108
Identities = 435/514 (84%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 88 catcctggggaagattctagtccttccattgcagctgtggttgcttttcaagactggcct 147
|||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 13 catcctggagaagattccagtccttccattgctgctgtggttgcttcccaagactggcct 72
Query: 148 gaggttacaaagtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacag 207
||||| || |||||||||||||| || || || ||||||||| | ||||||||
Sbjct: 73 gaggtcactaagtatgcaggattagttagcgcccaagcccataggcaagaattgatacag 132
Query: 208 gatcttttcaaggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagg 267
|||||||| || ||||||||||||||| |||| || ||||| ||||||||||||||| |
Sbjct: 133 gatctttttaaagtatggcaagatccccaaagaggaactgtgactggtggcatgatcaag 192
Query: 268 gagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctac 327
||||||||||| |||||| ||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 193 gagcttctcatttctttcaagagggcaaccggacagaaaccccagagaatcatattttac 252
Query: 328 agggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccatt 387
|||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 253 agggatggtgtcagcgagggccagttctatcaagttcttcggtatgaacttgatgccatt 312
Query: 388 agaaaggcctgtgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtc 447
|||||||| |||||||| |||||| | | |||||||| |||||||||||||| || |||
Sbjct: 313 agaaaggcatgtgcgtccttggagcccaattaccagcccccagttacttttgtagttgtc 372
Query: 448 cagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgat 507
||| |||| |||||||||| | | ||||||||||| ||||||||| | ||| ||| |||
Sbjct: 373 cagaagcggcatcacaccaagctttttgctaataaccacaatgatcaacgtactggtgat 432
Query: 508 aaaagcgggaacatactgcctggcact-gtggtggactcgaagatctgccatccaactga 566
| |||||| |||||||||||||||||| ||||||| || ||||| || ||||| | ||
Sbjct: 433 agaagcggaaacatactgcctggcactggtggtgg-ttcaaagatttggcatccgaacga 491
Query: 567 gtttgatttctacctgtgcagccatgctggcatt 600
||||||||||||| |||| ||||| ||| |||||
Sbjct: 492 gtttgatttctacttgtgtagccacgcttgcatt 525
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 394 bits (199), Expect = e-108
Identities = 408/478 (85%)
Strand = Plus / Plus
Query: 200 tgatacaggatcttttcaaggtatggcaagatcccgaaagggggactgtctctggtggca 259
|||||||||||| ||| || ||||||||||||||| |||| || ||||| |||||||||
Sbjct: 60 tgatacaggatccttttaaagtatggcaagatccccaaagaggaactgtgactggtggca 119
Query: 260 tgatcagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatca 319
|||||| ||||||||||| |||||| ||||||||| ||||||||||| |||| ||||
Sbjct: 120 tgatcaaagagcttctcatttctttcaagagggcaaccggacagaaaccccagagaatca 179
Query: 320 tattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttg 379
|||| |||| |||||| ||||| ||||| || ||||| |||||||| ||||||||||||
Sbjct: 180 tattttacaaggatggtgtcagcgagggccagttctatcaagttcttctgtatgaacttg 239
Query: 380 atgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagttacttttg 439
|||||||||||||||| |||||||| |||||| | | |||||||| |||||||||||||
Sbjct: 240 atgccattagaaaggcatgtgcgtccttggagcccaattaccagcccccagttacttttg 299
Query: 440 tcgtggtccagnagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtg 499
| || |||||| |||| |||||||||||| | ||||||||||| ||||||||| | |||
Sbjct: 300 tagttgtccagaagcggcatcacaccaggctttttgctaataaccacaatgatcaacgta 359
Query: 500 ctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatc 559
|||| |||| |||||| |||||||||||||||||||| || || || ||||| |||||||
Sbjct: 360 ctgttgatagaagcggaaacatactgcctggcactgttgttgattcaaagatttgccatc 419
Query: 560 caactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctg 619
| || ||||||||||||||| |||| | ||| ||||||||||||||||||||||| ||||
Sbjct: 420 cgaccgagtttgatttctacttgtgtaaccacgctggcattcagggaacaagccggcctg 479
Query: 620 cccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactct 677
| |||| || || || |||||||| ||||| || || ||||||| |||||||||||
Sbjct: 480 ctaattatcacgtactatgggatgaaaacaagttcactgctgatgaattgcaaactct 537
>gb|BG417425.2|BG417425 HVSMEk0017E11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0017E11f, mRNA sequence
Length = 689
Score = 392 bits (198), Expect = e-108
Identities = 369/429 (86%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 256 tttggtgctgatgttacacatcctcaccctggagaagattccagcccttccattgcagct 315
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| |||||||||||||||| | || ||||| |||||||| |||||||| |||
Sbjct: 316 gtggttgcttctcaagactggcctgagataactaagtacgcaggattagtgagtgcccaa 375
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||| | |||||||||||||||| || ||||||||||||||| |||| ||
Sbjct: 376 gcccataggcaagagctgatacaggatctttttaaagtatggcaagatccccaaagagga 435
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 436 actgtgactggcggcatgatcaaggagcttctcatatctttcaagagggcaactgggcag 495
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| |||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 496 aaacctcagagaatcatattttacagggatggtgtcagcgagggacagttctaccaagtt 555
Query: 364 ctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccag 423
||||||| |||||||||||||||||| ||||||||||| || |||||| | | || ||
Sbjct: 556 ctgttgtttgaacttgatgccattaggaaggcctgtgcatccttggagccaaattatcaa 615
Query: 424 cctccagttacttttgtcgtggtccagnagcgtcatcacaccaggttgtttgctaataat 483
||||||||||||||||| || |||||| ||||||| ||||| ||| | |||||||| |||
Sbjct: 616 cctccagttacttttgtggttgtccagaagcgtcaccacactaggctttttgctaacaat 675
Query: 484 cacaatgat 492
|||||||||
Sbjct: 676 cacaatgat 684
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 357 bits (180), Expect = 5e-097
Identities = 276/308 (89%)
Strand = Plus / Minus
Query: 481 aatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtg 540
|||||||||||| | ||| ||||||||| |||||||||||||||||||||||| || ||
Sbjct: 644 aatcacaatgatcagcgtactgtcgatagaagcgggaacatactgcctggcaccgttgtt 585
Query: 541 gactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcatt 600
|| ||||||||||||||||| || || || ||||||||| |||| |||||||||||||||
Sbjct: 584 gattcgaagatctgccatccgacagaattcgatttctacttgtgtagccatgctggcatt 525
Query: 601 cagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggct 660
|||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| |||
Sbjct: 524 cagggaacaagccggcctgcccactatcatgttctctgggacgagaacaaatttactgct 465
Query: 661 gatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctca 720
|||| ||||||||||||||| |||||| |||| |||||||||||| | ||||| |||||
Sbjct: 464 gatgagttgcaaactctcacaaacaacctgtgctacacgtatgctcgatgcacccgctct 405
Query: 721 gtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctac 780
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 404 gtatcgattgttcctcctgcatactatgcccatctggcagccttccgggctcggttctac 345
Query: 781 atggagcc 788
||||||||
Sbjct: 344 atggagcc 337
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 256 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 197
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 196 tttactgctaaga 184
>gb|BU975928.1|BU975928 HB32L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB32L19
5-PRIME, mRNA sequence
Length = 456
Score = 353 bits (178), Expect = 8e-096
Identities = 323/374 (86%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 83 tttggtgctgatgttacacatcctcaccctggagaagattccagcccttccattgcagct 142
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| |||||||||||||||| | || ||||| |||||||| |||||||| |||
Sbjct: 143 gtggttgcttctcaagactggcctgagataactaagtacgcaggattagtgagtgcccaa 202
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||| | |||||||||||||||| || ||||||||||||||| |||| ||
Sbjct: 203 gcccataggcaagagctgatacaggatctttttaaagtatggcaagatccccaaagagga 262
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 263 actgtgactggcggcatgatcaaggagcttctcatatctttcaagagggcaactgggcag 322
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| |||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 323 aaacctcagagaatcatattttacagggatggtgtcagcgagggacagttctaccaagtt 382
Query: 364 ctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccag 423
||||||| |||||||||||||||||| ||||||||||| || |||||| | | || |||
Sbjct: 383 ctgttgtttgaacttgatgccattaggaaggcctgtgcatccttggagccaaattatcag 442
Query: 424 cctccagttacttt 437
||||||||||||||
Sbjct: 443 cctccagttacttt 456
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 343 bits (173), Expect = 8e-093
Identities = 260/289 (89%)
Strand = Plus / Minus
Query: 500 ctgtcgataaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatc 559
||||||||| |||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct: 576 ctgtcgatagaagcgggaacatactgcctggcaccgttgttgattcgaagatctgccatc 517
Query: 560 caactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctg 619
| || || || ||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 516 cgacagaattcgatttctacttgtgtagccatgctggcattcagggaacaagccggcctg 457
Query: 620 cccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctca 679
|||| || |||||||| ||||| |||||||| ||||| ||||||| ||||||||||||||
Sbjct: 456 cccactatcatgttctctgggacgagaacaaatttactgctgatgagttgcaaactctca 397
Query: 680 ccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctg 739
| |||||| |||| |||||||||||| | ||||| ||||| |||||||||||||||||||
Sbjct: 396 caaacaacctgtgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctg 337
Query: 740 catactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 336 catactatgcccatctggcagccttccgggctcggttctacatggagcc 288
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 207 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 148
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 147 tttactgctaaga 135
>gb|CA030641.1|CA030641 HX07K22r HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
5-PRIME, mRNA sequence
Length = 621
Score = 319 bits (161), Expect = 1e-085
Identities = 318/373 (85%)
Strand = Plus / Plus
Query: 39 tgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctgggga 98
||||||||||| | | || || || |||||||||||||| || || || |||||||| ||
Sbjct: 232 tgtcagtgacagaccaacaataatatttggtgctgatgttacacaccctcatcctggaga 291
Query: 99 agattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaaa 158
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||| || ||
Sbjct: 292 agattccagtccttccattgctgctgtggttgcttcccaagactggcctgaggtcactaa 351
Query: 159 gtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttcaa 218
|||||||||||| || || || ||||||||| | |||||||||||||||| ||
Sbjct: 352 gtatgcaggattagttagcgcccaagcccataggcaagaattgatacaggatctttttaa 411
Query: 219 ggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcat 278
||||||||||||||| |||| || ||||| ||||||||||||||| ||||||||||||
Sbjct: 412 agtatggcaagatccccaaagaggaactgtgactggtggcatgatcaaggagcttctcat 471
Query: 279 atctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgt 338
|||||| ||||||||| ||||||||||| |||| |||||||| ||||||||||| ||
Sbjct: 472 ttctttcaagagggcaaccggacagaaaccccagagaatcatattttacagggatggtgt 531
Query: 339 cagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctg 398
||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct: 532 cagcgagggccagttctatcaagttcttctgtatgaacttgatgccattagaaaggcatg 591
Query: 399 tgcgtcattggag 411
|||||| ||||||
Sbjct: 592 tgcgtccttggag 604
>gb|BU978254.1|BU978254 HA12N07r HA Hordeum vulgare subsp. vulgare cDNA clone HA12N07
5-PRIME, mRNA sequence
Length = 493
Score = 311 bits (157), Expect = 3e-083
Identities = 278/321 (86%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 173 tttggtgctgatgttacacatcctcaccctggagaagattccagcccttccattgcagct 232
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| |||||||||||||||| | || ||||| |||||||| |||||||| |||
Sbjct: 233 gtggttgcttctcaagactggcctgagataactaagtacgcaggattagtgagtgcccaa 292
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||| | |||||||||||||||| || ||||||||||||||| |||| ||
Sbjct: 293 gcccataggcaagagctgatacaggatctttttaaagtatggcaagatccccaaagagga 352
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 353 actgtgactggcggcatgatcaaggagcttctcatatctttcaagagggcaactgggcag 412
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| |||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 413 aaacctcagagaatcatattttacagggatggtgtcagcgagggacagttctaccaagtt 472
Query: 364 ctgttgtatgaacttgatgcc 384
||||||| |||||||||||||
Sbjct: 473 ctgttgtttgaacttgatgcc 493
>gb|BG414215.1|BG414215 HVSMEk0001E02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001E02f, mRNA sequence
Length = 563
Score = 291 bits (147), Expect = 3e-077
Identities = 265/307 (86%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagct 123
|||||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||
Sbjct: 255 tttggtgctgatgttacacatcctcaccctggagaagattccagcccttccattgcagct 314
Query: 124 gtggttgcttttcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaa 183
|||||||||| |||||||||||||||| | || ||||| |||||||| |||||||| |||
Sbjct: 315 gtggttgcttctcaagactggcctgagataactaagtacgcaggattagtgagtgcccaa 374
Query: 184 gcccatcgnnnnnnnntgatacaggatcttttcaaggtatggcaagatcccgaaaggggg 243
|||||| | |||||||||||||||| || ||||||||||||||| |||| ||
Sbjct: 375 gcccataggcaagagctgatacaggatctttttaaagtatggcaagatccccaaagagga 434
Query: 244 actgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacag 303
||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 435 actgtgactggcggcatgatcaaggagcttctcatatctttcaagagggcaactgggcag 494
Query: 304 aaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagtt 363
||||| |||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 495 aaacctcagagaatcatattttacagggatggtgtcagcgagggacagttctaccaagtt 554
Query: 364 ctgttgt 370
|||||||
Sbjct: 555 ctgttgt 561
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 281 bits (142), Expect = 2e-074
Identities = 368/443 (83%), Gaps = 3/443 (0%)
Strand = Plus / Plus
Query: 346 ggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctgtgcgtca 405
||||| ||||| || |||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 22 ggacagttctatcaggttctgttgtatgagcttgatgcgattagaaaggcctgcgcatcc 81
Query: 406 ttggagtctgactaccagcctccagttacttttgtcgtggtccagnagcgtcatcacacc 465
|||||| | | || ||||| || ||||| ||||| ||||||||| | || ||||| ||
Sbjct: 82 ttggagcccaattatcagccacccgttacatttgtggtggtccagaaacgccatcataca 141
Query: 466 aggttgtttgctaataatcacaatgataatcgtgctgtcgata---aaagcgggaacata 522
|| | ||||| || || ||||| ||| | || ||| |||| |||| || ||||||
Sbjct: 142 cggctatttgccaacaaccacaacgatcagcgaagtgttgatagaaaaagtggaaacata 201
Query: 523 ctgcctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctg 582
|||||||| || || || || || ||||| |||||||| |||||||| |||||||||||
Sbjct: 202 ctgcctggtaccgtcgttgattcaaagatatgccatcctactgagttcgatttctacctt 261
Query: 583 tgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggat 642
|| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 262 tgtagccatgctggtattcagggaacaagccgccctgcgcattaccatgtcctttgggat 321
Query: 643 gagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtat 702
|||||||| ||||| || ||||| ||||| |||||||| |||||| |||| ||||| ||
Sbjct: 322 gagaacaattttaccgcggatggtttgcagactctcacgaacaacctgtgctacacctac 381
Query: 703 gctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcc 762
|| |||||||| || || ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 382 gcaaggtgcacccgttctgtatcgattgtgcctccggcatactatgctcacctcgcggct 441
Query: 763 ttccgagctcggttctacatgga 785
|| ||||||||||||||||||||
Sbjct: 442 tttcgagctcggttctacatgga 464
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 281 bits (142), Expect = 2e-074
Identities = 214/238 (89%)
Strand = Plus / Minus
Query: 551 tctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaa 610
|||||||||| || || || ||||||||| |||| |||||||||||||||||||||||||
Sbjct: 673 tctgccatccgacagaattcgatttctacttgtgtagccatgctggcattcagggaacaa 614
Query: 611 gccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgc 670
|||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||| |||||
Sbjct: 613 gccggcctgcccactatcatgttctctgggacgagaacaaatttactgctgatgagttgc 554
Query: 671 aaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattg 730
|||||||||| |||||| |||| |||||||||||| | ||||| ||||| ||||||||||
Sbjct: 553 aaactctcacaaacaacctgtgctacacgtatgctcgatgcacccgctctgtatcgattg 494
Query: 731 ttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagcc 788
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 493 ttcctcctgcatactatgcccatctggcagccttccgggctcggttctacatggagcc 436
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 355 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 296
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 295 tttactgctaaga 283
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 280 bits (141), Expect = 1e-073
Identities = 263/304 (86%)
Strand = Plus / Minus
Query: 485 acaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcactgtggtggact 544
|||||||| | ||| |||| |||| |||||| ||||||||||||||||||| || || |
Sbjct: 635 acaatgatcaacgtactgttgatagaagcgganacatactgcctggcactgttgttgatt 576
Query: 545 cgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagg 604
| ||||| |||||||| || ||||||||||||||| |||| ||||| |||||||||||||
Sbjct: 575 caaagatttgccatccgaccgagtttgatttctacttgtgtagccacgctggcattcagg 516
Query: 605 gaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatg 664
|||||||||| ||||| ||||| || || || |||||||||||||| || || |||||||
Sbjct: 515 gaacaagccgtcctgctcattatcacgtactatgggatgagaacaagttcactgctgatg 456
Query: 665 ggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtat 724
|||||||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 455 agttgcaaactctaacaaacaacttgtgctacacgtatgctaggtgcacccgctctgtat 396
Query: 725 cgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatgg 784
| ||||| ||||| ||||| ||||| || ||||||||||||| |||||||| |||||||
Sbjct: 395 caattgtgcctccagcatattatgcacatttggcagccttccgggctcggttttacatgg 336
Query: 785 agcc 788
||||
Sbjct: 335 agcc 332
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
|||||||||||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 257 ttgggaatgttgctgtcaggcccctccccgccctgaaggaaaacgtgaagcgtgtcatgt 198
Query: 923 tctactgctaag 934
| ||||| ||||
Sbjct: 197 tttactgttaag 186
>gb|BG417650.1|BG417650 HVSMEk0019A03f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019A03f, mRNA sequence
Length = 785
Score = 242 bits (122), Expect = 2e-062
Identities = 258/306 (84%)
Strand = Plus / Plus
Query: 98 aagattctagtccttccattgcagctgtggttgcttttcaagactggcctgaggttacaa 157
||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 24 aagattccagtccttccattgctgctgtggttgcttcccaagactggcctgaggtcacta 83
Query: 158 agtatgcaggattggtgagtgctcaagcccatcgnnnnnnnntgatacaggatcttttca 217
||||||||||||| || || || ||||||||| | |||||||||||||||| |
Sbjct: 84 agtatgcaggattagttagcgcccaagcccataggcaagaattgatacaggatcttttta 143
Query: 218 aggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctca 277
| ||||||||||||||| |||| || ||||| ||||||||||||||| |||||||||||
Sbjct: 144 aagtatggcaagatccccaaagaggaactgtgactggtggcatgatcaaggagcttctca 203
Query: 278 tatctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcg 337
| |||||| ||||||||| ||||||||||| |||| |||||||| ||||||||||| |
Sbjct: 204 tttctttcaagagggcaaccggacagaaaccccagagaatcatattttacagggatggtg 263
Query: 338 tcagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcct 397
|||| || || || |||| ||| |||| ||| ||||||||||||||||| |||||| |
Sbjct: 264 tcagcgatggccacatctatcaatttcttctgtctgaacttgatgccattataaaggcat 323
Query: 398 gtgcgt 403
||||||
Sbjct: 324 gtgcgt 329
>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
3-PRIME, mRNA sequence
Length = 603
Score = 204 bits (103), Expect = 5e-051
Identities = 178/203 (87%)
Strand = Plus / Minus
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
||||| ||||||||||||||||||||||| ||||| ||||| || || || |||||||||
Sbjct: 601 agccacgctggcattcagggaacaagccgtcctgctcattatcacgtactatgggatgag 542
Query: 646 aacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgct 705
||||| || || ||||||| |||||||||||| || ||||||||||| ||||||||||||
Sbjct: 541 aacaagttcactgctgatgagttgcaaactctaacaaacaacttgtgctacacgtatgct 482
Query: 706 aggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttc 765
|||||||| ||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 481 aggtgcacccgctctgtatcaattgtgcctccagcatattatgcacatttggcagccttc 422
Query: 766 cgagctcggttctacatggagcc 788
|| |||||||| |||||||||||
Sbjct: 421 cgggctcggttttacatggagcc 399
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
|||||||||||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 324 ttgggaatgttgctgtcaggcccctccccgccctgaaggaaaacgtgaagcgtgtcatgt 265
Query: 923 tctactgctaag 934
| ||||| ||||
Sbjct: 264 tttactgttaag 253
>gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61F01
5-PRIME, mRNA sequence
Length = 468
Score = 172 bits (87), Expect = 2e-041
Identities = 120/131 (91%)
Strand = Plus / Plus
Query: 658 gctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgc 717
||||||| ||||||||||||||| |||||| |||| |||||||||||| | ||||| |||
Sbjct: 1 gctgatgagttgcaaactctcacaaacaacctgtgctacacgtatgctcgatgcacccgc 60
Query: 718 tcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttc 777
|| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 61 tctgtatcgattgttcctcctgcatactatgcccatctggcagccttccgggctcggttc 120
Query: 778 tacatggagcc 788
|||||||||||
Sbjct: 121 tacatggagcc 131
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 212 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 271
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 272 tttactgctaaga 284
>gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 3', mRNA sequence
Length = 463
Score = 153 bits (77), Expect = 1e-035
Identities = 149/173 (86%)
Strand = Plus / Minus
Query: 622 cattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcacc 681
||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct: 459 cattaccatgtcctttgggatgagaacaattttaccgcggatggtttgcagactctcacg 400
Query: 682 aacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgca 741
|||||| |||| ||||| || || |||||||| || || ||||||||||| ||||| |||
Sbjct: 399 aacaacctgtgctacacctacgcaaggtgcacccgttctgtatcgattgtgcctccggca 340
Query: 742 tactatgctcacctggcagccttccgagctcggttctacatggagccagatac 794
|||||||||||||| || || || |||||||||||||||||||| || |||||
Sbjct: 339 tactatgctcacctcgcggcttttcgagctcggttctacatggaaccggatac 287
Score = 46.1 bits (23), Expect = 0.002
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||||||||||||| | ||| | |||| |||||| |||||||||| || ||||||||
Sbjct: 207 gggaatgttgctgttaagcctctgcctgacctcaactaaaacgtgaaacgtgtcatgttt 148
Query: 925 tactgct 931
|||||||
Sbjct: 147 tactgct 141
>gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N072 5-PRIME, mRNA sequence
Length = 614
Score = 141 bits (71), Expect = 6e-032
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 682 aacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgca 741
|||||| |||| |||||||||||| | ||||| ||||| |||||||||||||||||||||
Sbjct: 2 aacaacctgtgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgca 61
Query: 742 tactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 62 tactatgcccatctggcagccttccgggctcggttctacatggagcc 108
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 189 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 248
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 249 tttactgctaaga 261
>gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 3', mRNA sequence
Length = 614
Score = 127 bits (64), Expect = 8e-028
Identities = 124/144 (86%)
Strand = Plus / Minus
Query: 642 tgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgta 701
||||||||| ||||| || ||||| ||||| |||||||| |||||| |||| ||||| ||
Sbjct: 614 tgagaacaattttaccgcggatggtttgcagactctcacgaacaacctgtgctacaccta 555
Query: 702 tgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagc 761
|| |||||||| || || ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 554 cgcaaggtgcacccgttctgtatcgattgtgcctccggcatactatgctcacctcgcggc 495
Query: 762 cttccgagctcggttctacatgga 785
|| ||||||||||||||||||||
Sbjct: 494 ttttcgagctcggttctacatgga 471
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||||||||||||| | ||| | |||| |||||||||||||||||| || ||||||||
Sbjct: 382 gggaatgttgctgttaagcctctgcctgacctcaaggaaaacgtgaaacgtgtcatgttt 323
Query: 925 tactgct 931
|||||||
Sbjct: 322 tactgct 316
>gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 5', mRNA sequence
Length = 507
Score = 123 bits (62), Expect = 1e-026
Identities = 135/158 (85%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 637 tgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttac 696
||||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||| |||
Sbjct: 7 tgggatgagaacat-tttaccgcggatggtttgcagactctcacgaacaacctgtgctac 65
Query: 697 acgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctg 756
|| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 66 acctacgcaaggtgcacccgttctgtatcgattgtgcctccggcatactatgctcacctc 125
Query: 757 gcagccttccgagctcggttctacatggagccagatac 794
|| || || |||||||||||||||||||| || |||||
Sbjct: 126 gcggcttttcgagctcggttctacatggaaccggatac 163
Score = 61.9 bits (31), Expect = 4e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 865 gggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttc 924
|||||||||||||| | ||| | |||| |||||||||||||||||| || ||||||||
Sbjct: 243 gggaatgttgctgttaagcctctgcctgacctcaaggaaaacgtgaaacgtgtcatgttt 302
Query: 925 tactgct 931
|||||||
Sbjct: 303 tactgct 309
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 121 bits (61), Expect = 5e-026
Identities = 169/205 (82%)
Strand = Plus / Plus
Query: 548 agatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaa 607
|||||||||| ||||| ||||||||||||| ||| || ||||||||||| || ||||||
Sbjct: 309 agatctgccacccaacagagtttgatttcttcctctgtagccatgctgggatcaagggaa 368
Query: 608 caagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggt 667
||||||| ||||| |||||||| || ||| | ||||| |||||||| | |||||||
Sbjct: 369 caagccgtcctgcgcattaccacgtgctgcgagatgacaacaacttcagtgctgatgacc 428
Query: 668 tgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcga 727
|||| |||| || |||||| |||| ||||||||||| || ||||| ||||| || ||||
Sbjct: 429 tgcagtctcttacaaacaacctgtgctacacgtatgcaagctgcactcgctccgtgtcga 488
Query: 728 ttgttcctcctgcatactatgctca 752
|| ||||||||| ||||| |||||
Sbjct: 489 ctgctcctcctgcgtactacgctca 513
Score = 42.1 bits (21), Expect = 0.039
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 319 atattctacagggatggcgtcagtgaggg 347
|||||||| ||||||||||| ||||||||
Sbjct: 92 atattctatagggatggcgtaagtgaggg 120
>gb|BQ663666.1|BQ663666 HU03I11u HU Hordeum vulgare subsp. vulgare cDNA clone HU03I11
3-PRIME, mRNA sequence
Length = 562
Score = 117 bits (59), Expect = 8e-025
Identities = 174/211 (82%), Gaps = 6/211 (2%)
Strand = Plus / Minus
Query: 590 atgctggcattcagggaacaagccgccctgcc-cattaccatgttctgtgggatgagaac 648
|||||||||||||||||||||||| ||||| ||||| | |||||||||| | ||||||
Sbjct: 510 atgctggcattcagggaacaagccagcctgcttcattatcttgttctgtggaacgagaac 451
Query: 649 aactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgt-----atg 703
|| ||||| ||||||| ||||||||||| || ||||||| ||| ||||||| |||
Sbjct: 450 aaatttaccgctgatgagttgcaaactcccaaaaacaactcgtgctacacgtaacgaatg 391
Query: 704 ctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagcct 763
||||| ||| ||||| |||||||| |||||||| ||||| ||||| || ||||||||||
Sbjct: 390 ctaggcgcatccgctctgtatcgatcgttcctccagcatattatgcacatctggcagcct 331
Query: 764 tccgagctcggttctacatggagccagatac 794
| | ||||| || |||| |||| |||||||
Sbjct: 330 tttgggctcgattttacacggagacagatac 300
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 87.7 bits (44), Expect = 7e-016
Identities = 206/260 (79%)
Strand = Plus / Plus
Query: 508 aaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgag 567
||||| || ||||| || ||||| || ||||| ||| | || || |||||||| || |||
Sbjct: 411 aaaagtggaaacatccttcctggaaccgtggttgacaccaacatatgccatcccaccgag 470
Query: 568 tttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattac 627
||||||||||||||||| |||||||| || |||||||| |||||| | || | || |||
Sbjct: 471 tttgatttctacctgtgtagccatgccggtattcagggcacaagcagaccaactcactac 530
Query: 628 catgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaac 687
||||| || | ||||| ||| || || || |||||| |||| ||||||||||||
Sbjct: 531 catgtcctcttcgatgaaaacggtttcactgccgatgggctgcagcagctcaccaacaac 590
Query: 688 ttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactat 747
|||| ||||| || ||| | ||||| ||||| || || ||||||||||||| |||||
Sbjct: 591 ctgtgctacacatacgctcgatgcactcgctctgtctctgttgttcctcctgcctactac 650
Query: 748 gctcacctggcagccttccg 767
||||||||||| || |||||
Sbjct: 651 gctcacctggctgcgttccg 670
Score = 58.0 bits (29), Expect = 7e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 313 aggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtat 372
|||||||||||||||||||| || || || || || || ||| |||||||||| |||||
Sbjct: 222 aggatcatattctacagggacggtgtgagcgaagggcagttcgcccaagttctgatgtat 281
Query: 373 gaacttgatgccattagaaaggcctgtgc 401
||| | |||||||| || ||||| |||||
Sbjct: 282 gaaatggatgccatcaggaaggcttgtgc 310
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 79.8 bits (40), Expect = 2e-013
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||| ||||| || || |||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 211 cctggaactgttgttgattcgaagatatgccacccaacggagtttgatttctacctctgt 270
Query: 586 agccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgag 645
|| || ||||| || ||||| ||||| | || || || |||||||| || |||||||||
Sbjct: 271 agtcacgctggaatccagggtacaagtaggccagctcactaccatgtcctctgggatgag 330
Query: 646 aacaactt 653
||||||||
Sbjct: 331 aacaactt 338
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 332 atggcgtcagtgagggacaattctaccaagttct 365
||||||| ||||| || |||||||||||||||||
Sbjct: 15 atggcgttagtgaaggccaattctaccaagttct 48
Score = 42.1 bits (21), Expect = 0.039
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||| || || || ||||| || ||||| || |||||||||||||||||
Sbjct: 421 cctgcatattacgcgcatctggctgcattccgggcgcggttctacatggagcc 473
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 77.8 bits (39), Expect = 7e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 565 gagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccat 624
|||||||||||||||||||| |||||||| || |||||||| |||||| | || | ||
Sbjct: 19 gagtttgatttctacctgtgtagccatgccggtattcagggcacaagcagaccaactcac 78
Query: 625 taccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaac 684
|||||||| || | ||||| ||| || || || |||||| |||| |||||||||
Sbjct: 79 taccatgtcctcttcgatgaaaacggtttcactgccgatgggctgcagcagctcaccaac 138
Query: 685 aacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatac 744
||| |||| ||||| || ||| | ||||| ||||| || || ||||||||||||| |||
Sbjct: 139 aacctgtgctacacatacgctcgatgcactcgctctgtctctgttgttcctcctgcctac 198
Query: 745 tatgctcacctggcagccttccg 767
|| ||||||||||| || |||||
Sbjct: 199 tacgctcacctggctgcgttccg 221
>gb|AL511938.1|AL511938 AL511938 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09N04u 3',
mRNA sequence
Length = 558
Score = 73.8 bits (37), Expect = 1e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | || ||||||||||||||||| ||||| |||||||
Sbjct: 423 ttgggaacgttgctgtcaggcctctccccgccctcaaggaaaacgtcaagcgcgtcatgt 364
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 363 tttactgctaaga 351
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 73.8 bits (37), Expect = 1e-011
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 508 aaaagcgggaacatactgcctggcactgtggtggactcgaagatctgccatccaactgag 567
||||| || ||||| || ||||| || ||||| ||| | || || |||||||| || |||
Sbjct: 262 aaaagtggaaacatccttcctggaaccgtggttgacaccaacatatgccatcccaccgag 321
Query: 568 tttgatttctacctgtgcagccatgctggcattcagggaacaagc 612
||||||||||||||||| |||||||| || |||||||| ||||||
Sbjct: 322 tttgatttctacctgtgtagccatgccggtattcagggcacaagc 366
Score = 58.0 bits (29), Expect = 7e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 313 aggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtat 372
|||||||||||||||||||| || || || || || || ||| |||||||||| |||||
Sbjct: 73 aggatcatattctacagggacggtgtgagcgaagggcagttcgcccaagttctgatgtat 132
Query: 373 gaacttgatgccattagaaaggcctgtgc 401
||| | |||||||| || ||||| |||||
Sbjct: 133 gaaatggatgccatcaggaaggcttgtgc 161
>gb|BM101164.2|BM101164 EBpi01_SQ003_B06_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_B06 5', mRNA sequence
Length = 363
Score = 71.9 bits (36), Expect = 4e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
|||||||||||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 69 ttgggaatgttgctgtcaggcccctccccgccctgaaggaaaacgtgaagcgtgtcatgt 128
Query: 923 tctactgctaag 934
| ||||| ||||
Sbjct: 129 tttactgttaag 140
>gb|BU978255.1|BU978255 HA12N07u HA Hordeum vulgare subsp. vulgare cDNA clone HA12N07
3-PRIME, mRNA sequence
Length = 422
Score = 67.9 bits (34), Expect = 7e-010
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 863 ttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgt 922
||||||| |||||||| ||||| | | ||||||||||||||||| ||||| |||||||
Sbjct: 412 ttgggaacgttgctgtcaggcctctcnccgccctcaaggaaaacgtcaagcgcgtcatgt 353
Query: 923 tctactgctaaga 935
| |||||||||||
Sbjct: 352 tttactgctaaga 340
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 65.9 bits (33), Expect = 3e-009
Identities = 106/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 526 cctggcactgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgc 585
||||| ||||| || || |||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 580 cctggaactgttgttgattcgaagatatgccacccaacggagtttgatttctacctctgt 521
Query: 586 agccatgctggcat-tcagggaacaagccgccctgcccattaccatgttctgtgggatga 644
|| || ||||| || ||||| ||||| | || || || |||||||| || ||||||||
Sbjct: 520 agtcacgctggaatcccagggtacaagtaggccagctcactaccatgtcctctgggatga 461
Query: 645 gaacaactt 653
|||||||||
Sbjct: 460 gaacaactt 452
Score = 42.1 bits (21), Expect = 0.039
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 736 cctgcatactatgctcacctggcagccttccgagctcggttctacatggagcc 788
|||||||| || || || ||||| || ||||| || |||||||||||||||||
Sbjct: 369 cctgcatattacgcgcatctggctgcattccgggcgcggttctacatggagcc 317
>gb|AL501384.1|AL501384 AL501384 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04A05u 3', mRNA sequence
Length = 408
Score = 58.0 bits (29), Expect = 7e-007
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 892 gccctcaaggaaaacgtgaagcgggtcatgttctactgctaaga 935
||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 396 gccctcaaggaaaacgtcaagcgcgtcatgttttactgntaaga 353
>gb|BG418771.1|BG418771 HVSMEk0024G02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0024G02f, mRNA sequence
Length = 895
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 tttggtgctgatgtgacccatccccatcctgg 95
||||||||||||||||||||||| ||||||||
Sbjct: 642 tttggtgctgatgtgacccatcctcatcctgg 673
>gb|BG343249.1|BG343249 HVSMEg0005D14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005D14f, mRNA sequence
Length = 954
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 325 tacagggatggcgtcagtgagggacaattctaccaagt 362
||||||||||| ||||| |||||||| |||||||||||
Sbjct: 595 tacagggatggtgtcagcgagggacagttctaccaagt 632
>gb|BQ663779.1|BQ663779 HU04A08u HU Hordeum vulgare subsp. vulgare cDNA clone HU04A08
3-PRIME, mRNA sequence
Length = 526
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 58 attatctttggtgctgatgtgacccatccccatcct 93
||||| |||||||||||||| |||||||| ||||||
Sbjct: 325 attatatttggtgctgatgttacccatcctcatcct 290
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,372
Number of Sequences: 312970
Number of extensions: 84372
Number of successful extensions: 23696
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23614
Number of HSP's gapped (non-prelim): 76
length of query: 1118
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1099
effective length of database: 169,188,109
effective search space: 185937731791
effective search space used: 185937731791
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)