BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.4
(667 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 176 6e-043
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 176 6e-043
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 172 9e-042
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 172 9e-042
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 172 9e-042
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 163 9e-039
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 163 9e-039
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 139 1e-031
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 119 1e-025
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 117 5e-025
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 111 3e-023
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 109 1e-022
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 109 1e-022
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 109 1e-022
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 109 1e-022
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 109 1e-022
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 109 1e-022
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 109 1e-022
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 109 1e-022
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 109 1e-022
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 109 1e-022
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 109 1e-022
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 109 1e-022
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 109 1e-022
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 109 1e-022
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 109 1e-022
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 109 1e-022
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 109 1e-022
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 109 1e-022
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 107 5e-022
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 105 2e-021
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 103 7e-021
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 101 3e-020
gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA li... 101 3e-020
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 90 1e-016
gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. v... 86 2e-015
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 72 3e-011
gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA li... 68 4e-010
gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA li... 68 4e-010
gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA li... 68 4e-010
gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. v... 68 4e-010
gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. v... 68 4e-010
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 66 2e-009
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 66 2e-009
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 66 2e-009
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 66 2e-009
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 66 2e-009
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 66 2e-009
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 66 2e-009
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 66 2e-009
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 66 2e-009
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 66 2e-009
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 66 2e-009
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 66 2e-009
gb|BJ452844.1|BJ452844 BJ452844 K. Sato unpublished cDNA li... 64 6e-009
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 62 2e-008
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 62 2e-008
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 62 2e-008
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 62 2e-008
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 62 2e-008
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 62 2e-008
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 62 2e-008
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 62 2e-008
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 62 2e-008
gb|BF259601.3|BF259601 HVSMEf0019M06f Hordeum vulgare seedl... 60 1e-007
gb|BQ760759.1|BQ760759 EBro03_SQ003_G08_R root, 3 week, wat... 60 1e-007
gb|BU996532.1|BU996532 HM13O16r HM Hordeum vulgare subsp. v... 60 1e-007
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 58 4e-007
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 58 4e-007
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 58 4e-007
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 58 4e-007
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 56 2e-006
gb|BM815945.1|BM815945 HC105B07_T3.ab1 HC Hordeum vulgare s... 56 2e-006
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|AL501744.1|AL501744 AL501744 Hordeum vulgare Barke roots... 54 6e-006
gb|AV931127.1|AV931127 AV931127 K. Sato unpublished cDNA li... 54 6e-006
gb|BI779456.2|BI779456 EBro01_SQ004_B14_R root, 3 week, hyd... 54 6e-006
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 50 9e-005
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 48 4e-004
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 48 4e-004
gb|BG299430.2|BG299430 HVSMEa0019P14f Hordeum vulgare seedl... 44 0.006
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.023
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 42 0.023
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.090
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.090
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.090
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 40 0.090
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.090
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.090
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.090
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.090
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.090
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.090
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.090
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.090
gb|BQ464910.1|BQ464910 HU02B19r HU Hordeum vulgare subsp. v... 38 0.36
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 176 bits (89), Expect = 6e-043
Identities = 221/265 (83%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 119 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 178
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
| |||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |
Sbjct: 179 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 238
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
||||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |
Sbjct: 239 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 298
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctgg 240
|| || | || ||||| |||||||| ||||| || || |||||||||||||||||| |||
Sbjct: 299 gtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttgg 358
Query: 241 cttcaatcttctcactcctttgggt 265
|||| ||| |||| ||||| |||||
Sbjct: 359 cttcgatcatctcgctcctgtgggt 383
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 176 bits (89), Expect = 6e-043
Identities = 221/265 (83%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 87 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 146
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
| |||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |
Sbjct: 147 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 206
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
||||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |
Sbjct: 207 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 266
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctgg 240
|| || | || ||||| |||||||| ||||| || || |||||||||||||||||| |||
Sbjct: 267 gtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttgg 326
Query: 241 cttcaatcttctcactcctttgggt 265
|||| ||| |||| ||||| |||||
Sbjct: 327 cttcgatcatctcgctcctgtgggt 351
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 172 bits (87), Expect = 9e-042
Identities = 219/263 (83%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 92 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 151
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |||
Sbjct: 152 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 211
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |||
Sbjct: 212 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 271
Query: 183 ttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggct 242
|| | || ||||| |||||||| ||||| || || |||||||||||||||||| |||||
Sbjct: 272 ctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggct 331
Query: 243 tcaatcttctcactcctttgggt 265
|| ||| |||| ||||| |||||
Sbjct: 332 tcgatcatctcgctcctgtgggt 354
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 172 bits (87), Expect = 9e-042
Identities = 219/263 (83%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 367 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 426
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |||
Sbjct: 427 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 486
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |||
Sbjct: 487 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 546
Query: 183 ttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggct 242
|| | || ||||| |||||||| ||||| || || |||||||||||||||||| |||||
Sbjct: 547 ctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggct 606
Query: 243 tcaatcttctcactcctttgggt 265
|| ||| |||| ||||| |||||
Sbjct: 607 tcgatcatctcgctcctgtgggt 629
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 172 bits (87), Expect = 9e-042
Identities = 219/263 (83%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 165 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 224
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |||
Sbjct: 225 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 284
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |||
Sbjct: 285 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 344
Query: 183 ttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggct 242
|| | || ||||| |||||||| ||||| || || |||||||||||||||||| |||||
Sbjct: 345 ctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggct 404
Query: 243 tcaatcttctcactcctttgggt 265
|| ||| |||| ||||| |||||
Sbjct: 405 tcgatcatctcgctcctgtgggt 427
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 163 bits (82), Expect = 9e-039
Identities = 181/214 (84%)
Strand = Plus / Plus
Query: 52 tgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcat 111
|||||||||| |||||||| ||||| | ||||| |||||||| || ||||| || ||||
Sbjct: 29 tgaacttcatcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcat 88
Query: 112 ggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccct 171
|||| || |||||||||||||||||||| || || ||||||||||| |||||||| || |
Sbjct: 89 gggggcctctcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgt 148
Query: 172 tcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcca 231
||||||| ||| || | || ||||| |||||||| ||||| || || |||||||||||||
Sbjct: 149 tcctcaagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtcca 208
Query: 232 tcctgctggcttcaatcttctcactcctttgggt 265
||||| ||||||| ||| |||| ||||| |||||
Sbjct: 209 tcctgttggcttcgatcatctcgctcctgtgggt 242
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 163 bits (82), Expect = 9e-039
Identities = 181/214 (84%)
Strand = Plus / Plus
Query: 52 tgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcat 111
|||||||||| |||||||| ||||| | ||||| |||||||| || ||||| || ||||
Sbjct: 192 tgaacttcatcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcat 251
Query: 112 ggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccct 171
|||| || |||||||||||||||||||| || || ||||||||||| |||||||| || |
Sbjct: 252 gggggcctctcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgt 311
Query: 172 tcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcca 231
||||||| ||| || | || ||||| |||||||| ||||| || || |||||||||||||
Sbjct: 312 tcctcaagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtcca 371
Query: 232 tcctgctggcttcaatcttctcactcctttgggt 265
||||| ||||||| ||| |||| ||||| |||||
Sbjct: 372 tcctgttggcttcgatcatctcgctcctgtgggt 405
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 139 bits (70), Expect = 1e-031
Identities = 204/246 (82%), Gaps = 2/246 (0%)
Strand = Plus / Minus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 423 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 364
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccc 120
| |||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |
Sbjct: 363 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 304
Query: 121 tcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaag 180
||||||||||||||||||| || || ||||||||||| |||||||| || |||||||| |
Sbjct: 303 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 244
Query: 181 gtttggttgggaggcaaaacaggacaccgacaattgtcatcgt-ctggtccat-cctgct 238
|| || | || ||||| |||||||| ||||| || || ||||| ||||||||| |||| |
Sbjct: 243 gtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtnctggtccatncctgtt 184
Query: 239 ggcttc 244
||||||
Sbjct: 183 ggcttc 178
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 119 bits (60), Expect = 1e-025
Identities = 123/144 (85%)
Strand = Plus / Plus
Query: 122 cttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||||||||||||| || || ||||||||||| |||||||| || |||||||| ||
Sbjct: 2 cttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaaggg 61
Query: 182 tttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggc 241
| || | || ||||| |||||||| ||||| || || |||||||||||||||||| ||||
Sbjct: 62 tctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggc 121
Query: 242 ttcaatcttctcactcctttgggt 265
||| ||| |||| ||||| |||||
Sbjct: 122 ttcgatcatctcgctcctgtgggt 145
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 117 bits (59), Expect = 5e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 390 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 331
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||||| | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 330 ttcctcaagggttttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 271
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 270 gtcctcctggcttcaatcttctc 248
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 111 bits (56), Expect = 3e-023
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 475 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 534
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |||
Sbjct: 535 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 594
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatctgta 166
||||||||||||||||| || || ||||||||||| ||||||||
Sbjct: 595 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgta 638
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 554 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 495
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 494 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 435
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 434 gtcctcctggcttcaatcttctc 412
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 280 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 339
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 340 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 399
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 400 gtcctcctggcttcaatcttctc 422
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 279 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 338
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 339 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 398
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 399 gtcctcctggcttcaatcttctc 421
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 461 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 520
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 521 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 580
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 581 gtcctcctggcttcaatcttctc 603
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 516 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 457
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 456 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 397
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 396 gtcctcctggcttcaatcttctc 374
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 476 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 417
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 416 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 357
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 356 gtcctcctggcttcaatcttctc 334
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 533 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 474
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 473 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 414
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 413 gtcctcctggcttcaatcttctc 391
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 533 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 474
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 473 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 414
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 413 gtcctcctggcttcaatcttctc 391
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 468 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 527
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 528 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 587
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 588 gtcctcctggcttcaatcttctc 610
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 399 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 340
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 339 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 280
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 279 gtcctcctggcttcaatcttctc 257
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 533 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 474
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 473 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 414
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 413 gtcctcctggcttcaatcttctc 391
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 519 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 460
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 459 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 400
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 399 gtcctcctggcttcaatcttctc 377
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 421 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 480
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 481 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 540
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 541 gtcctcctggcttcaatcttctc 563
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 492 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 433
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 432 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 373
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 372 gtcctcctggcttcaatcttctc 350
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 278 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 337
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 338 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 397
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 398 gtcctcctggcttcaatcttctc 420
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 40 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 99
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 100 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 159
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 160 gtcctcctggcttcaatcttctc 182
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 68 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 127
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 128 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 187
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 188 gtcctcctggcttcaatcttctc 210
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 109 bits (55), Expect = 1e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 300 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 359
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 360 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggct 419
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 420 gtcctcctggcttcaatcttctc 442
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 107 bits (54), Expect = 5e-022
Identities = 114/134 (85%)
Strand = Plus / Minus
Query: 120 ctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaa 179
||||||||||||||||||||||| || ||||||||||| || | || |||||||||||
Sbjct: 508 ctcttcgggaagctcttctttgccttctgggtgattgttcacttataccccttcctcaag 449
Query: 180 ggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctg 239
||| | | || ||||||||| | |||||||| ||||||||||||||| | |||| |||
Sbjct: 448 ggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctg 389
Query: 240 gcttcaatcttctc 253
||||||||||||||
Sbjct: 388 gcttcaatcttctc 375
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 105 bits (53), Expect = 2e-021
Identities = 134/161 (83%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 500 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 559
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctc 122
|||||||| ||||| | ||||| |||||||| || ||||| || |||||||| || |||
Sbjct: 560 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 619
Query: 123 ttcgggaagctcttctttgcattttgggtgattgtccatct 163
||||||||||||||||| || || ||||||||||| |||||
Sbjct: 620 ttcgggaagctcttcttcgcgttctgggtgattgttcatct 660
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 103 bits (52), Expect = 7e-021
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 659 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 718
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || | ||||||| | |||||||| ||||||||||||||| |
Sbjct: 719 ttcctcaagggtcttatgggcangcaaaaccgcacaccgacgattgtcatcgtctgggct 778
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 779 gtcctcctggcttcaatcttctc 801
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 101 bits (51), Expect = 3e-020
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || |||||||||| || | || |||
Sbjct: 6 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgctcacttatacccc 65
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctggtcc 230
|||||||| ||| | | || ||||||||| | |||||||| ||||||||||||||| |
Sbjct: 66 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgactattgtcatcgtctgggct 125
Query: 231 atcctgctggcttcaatcttctc 253
|||| |||||||||||||||||
Sbjct: 126 gtcctactggcttcaatcttctc 148
>gb|BJ447591.1|BJ447591 BJ447591 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16h09 5', mRNA sequence
Length = 633
Score = 101 bits (51), Expect = 3e-020
Identities = 114/135 (84%)
Strand = Plus / Plus
Query: 131 gctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgg 190
||||||||| || || ||||||||||| |||||||| || |||||||| ||| || | ||
Sbjct: 2 gctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggtctgttggg 61
Query: 191 gaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatctt 250
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| |
Sbjct: 62 aaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcat 121
Query: 251 ctcactcctttgggt 265
||| ||||| |||||
Sbjct: 122 ctcgctcctgtgggt 136
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 111 tggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtatccc 170
||||| || ||||||||||||||||||||||| || ||||||||||| || | || |||
Sbjct: 460 tgggggccgctcttcgggaagctcttctttgccttctgggtgattgttcacttatacccc 519
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 227
|||||||| ||| | | || ||||||||| | |||||||| |||||||||||||||
Sbjct: 520 ttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgg 576
>gb|BQ663566.1|BQ663566 HU03C22u HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
3-PRIME, mRNA sequence
Length = 533
Score = 85.7 bits (43), Expect = 2e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 131 gctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgg 190
|||||||||||| || ||||||||||| || | || ||||||||||| ||| | | ||
Sbjct: 533 gctcttctttgccttctgggtgattgttcacttataccccttcctcaagggtcttatggg 474
Query: 191 gaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatctt 250
||||||||| | |||||||| ||||||||||||||| | |||| ||||||||||||||
Sbjct: 473 caggcaaaaccgcacaccgacgattgtcatcgtctgggctgtcctcctggcttcaatctt 414
Query: 251 ctc 253
|||
Sbjct: 413 ctc 411
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 71.9 bits (36), Expect = 3e-011
Identities = 129/160 (80%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||| ||||| || || ||||| ||||||||||| || || |||||||| || ||||| |
Sbjct: 392 agtcgtgggggccgctattcggtaagctcttcttcgccttctgggtgatcgtgcatctct 333
Query: 166 atcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtct 225
| || |||||||| ||||| | |||||||| |||||||| || || ||||||||| | |
Sbjct: 332 acccgttcctcaagggtttcatggggaggcagaacaggacgcccaccattgtcatcatat 273
Query: 226 ggtccatcctgctggcttcaatcttctcactcctttgggt 265
||||| | ||||| || || || ||||| || ||||||||
Sbjct: 272 ggtccgtgctgctagcctccatgttctccctgctttgggt 233
>gb|AV910504.1|AV910504 AV910504 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4m03 5', mRNA sequence
Length = 239
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 192 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 251
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 18 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 77
Query: 252 tcactcctttgggt 265
|| ||||| |||||
Sbjct: 78 tcgctcctgtgggt 91
>gb|AV918285.1|AV918285 AV918285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 3', mRNA sequence
Length = 607
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 192 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 251
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 605 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 546
Query: 252 tcactcctttgggt 265
|| ||||| |||||
Sbjct: 545 tcgctcctgtgggt 532
>gb|AV927371.1|AV927371 AV927371 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 3', mRNA sequence
Length = 683
Score = 67.9 bits (34), Expect = 4e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 192 aggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttc 251
||||| |||||||| ||||| || || |||||||||||||||||| ||||||| ||| ||
Sbjct: 678 aggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatcatc 619
Query: 252 tcactcctttgggt 265
|| ||||| |||||
Sbjct: 618 tcgctcctgtgggt 605
>gb|CA011082.1|CA011082 HT07B01u HT Hordeum vulgare subsp. vulgare cDNA clone HT07B01
3-PRIME, mRNA sequence
Length = 514
Score = 67.9 bits (34), Expect = 4e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 168 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 227
||||||||||| ||| | | || ||||||||| | |||||||| |||||||||||||||
Sbjct: 496 cccttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgg 437
Query: 228 tccatcctgctggcttcaatcttctc 253
| |||| |||||||||||||||||
Sbjct: 436 gctgtcctcctggcttcaatcttctc 411
>gb|CA015920.1|CA015920 HV11G20u HV Hordeum vulgare subsp. vulgare cDNA clone HV11G20
3-PRIME, mRNA sequence
Length = 469
Score = 67.9 bits (34), Expect = 4e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 168 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 227
||||||||||| ||| | | || ||||||||| | |||||||| |||||||||||||||
Sbjct: 460 cccttcctcaagggtcttatgggcaggcaaaaccgcacaccgacgattgtcatcgtctgg 401
Query: 228 tccatcctgctggcttcaatcttctc 253
| |||| |||||||||||||||||
Sbjct: 400 gctgtcctcctggcttcaatcttctc 375
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 321 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 262
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 261 acccattcctcaa 249
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 377 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 318
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 317 acccattcctcaa 305
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 384 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 325
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 324 acccattcctcaa 312
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 385 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 444
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 445 acccattcctcaa 457
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 296 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 355
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 356 acccattcctcaa 368
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 66 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 125
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 126 acccattcctcaa 138
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 290 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 349
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 350 acccattcctcaa 362
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 106 agtcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgt 165
|||||||||| || || |||||||||||||||||||| || ||||||||| |||| |||
Sbjct: 457 agtcatggggaccgcttttcgggaagctcttctttgccttctgggtgattatccacttgt 516
Query: 166 atcccttcctcaa 178
| || ||||||||
Sbjct: 517 acccattcctcaa 529
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,640
Number of Sequences: 312970
Number of extensions: 51640
Number of successful extensions: 13777
Number of sequences better than 0.5: 101
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13655
Number of HSP's gapped (non-prelim): 117
length of query: 667
length of database: 175,134,539
effective HSP length: 19
effective length of query: 648
effective length of database: 169,188,109
effective search space: 109633894632
effective search space used: 109633894632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)