BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. v... 143 1e-032
gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. v... 94 1e-017
gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. v... 94 1e-017
gb|BF624761.3|BF624761 HVSMEa0017K20f Hordeum vulgare seedl... 88 7e-016
gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke devel... 68 7e-010
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 48 6e-004
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 48 6e-004
>gb|BU990132.1|BU990132 HF24C23r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C23
5-PRIME, mRNA sequence
Length = 661
Score = 143 bits (72), Expect = 1e-032
Identities = 126/144 (87%)
Strand = Plus / Minus
Query: 939 tggtcttccacattttcagaaaatggctctgtacattcgcaatcaacaaccaaccctact 998
|||||||||| || ||||| | |||||||| ||||| ||||||| ||| |||||||||
Sbjct: 639 tggtcttccattttgtcagacattggctctgcccattcacaatcaataacaaaccctact 580
Query: 999 tcaccaccttgtgcagccttgaattttcttctataaacatcaacagcagcagcatgagcc 1058
| |||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 579 tgaccaccttgtttagccttgaattttcttctgtagacatcaacagcagcagcatgagct 520
Query: 1059 aagatttggtgatgggcagccaag 1082
||||| ||||||||| ||||||||
Sbjct: 519 aagatctggtgatggccagccaag 496
>gb|BQ472310.1|BQ472310 HB09P08T BC Hordeum vulgare subsp. vulgare cDNA clone HB09P08
5-PRIME, mRNA sequence
Length = 654
Score = 93.7 bits (47), Expect = 1e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 269 agcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggacag 328
||||||||| || || ||||| |||||||||| || |||||||| ||||| | ||| ||
Sbjct: 187 agcctcgccattcaggaagcgggagaaccacatggctgatgctttagggtgtcgggagag 128
Query: 329 cccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccactc 388
||| |||||||| || || || || || || |||||||||||| | ||||| ||||||||
Sbjct: 127 cccattcttgtaatcaacatagacaatcccaaacctcttggtgaatcccatcgcccactc 68
Query: 389 gaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcgc 448
||||| |||||||| ||||| |||||||| || || ||||| || || ||||| || ||
Sbjct: 67 aaagttatccaggaatgaccatgcaaagtatccacgaacatcggcaccatcctttattgc 8
Query: 449 ttg 451
|||
Sbjct: 7 ttg 5
>gb|BU968577.1|BU968577 HB07P08r BC Hordeum vulgare subsp. vulgare cDNA clone HB07P08
5-PRIME, mRNA sequence
Length = 454
Score = 93.7 bits (47), Expect = 1e-017
Identities = 149/183 (81%)
Strand = Plus / Minus
Query: 269 agcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggacag 328
||||||||| || || ||||| |||||||||| || |||||||| ||||| | ||| ||
Sbjct: 187 agcctcgccattcaggaagcgggagaaccacatggctgatgctttagggtgtcgggagag 128
Query: 329 cccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccactc 388
||| |||||||| || || || || || || |||||||||||| | ||||| ||||||||
Sbjct: 127 cccattcttgtaatcaacatagacaatcccaaacctcttggtgaatcccatcgcccactc 68
Query: 389 gaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtccttgatcgc 448
||||| |||||||| ||||| |||||||| || || ||||| || || ||||| || ||
Sbjct: 67 aaagttatccaggaatgaccatgcaaagtatccacgaacatcggcaccatcctttattgc 8
Query: 449 ttg 451
|||
Sbjct: 7 ttg 5
>gb|BF624761.3|BF624761 HVSMEa0017K20f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0017K20f, mRNA sequence
Length = 817
Score = 87.7 bits (44), Expect = 7e-016
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 995 tacttcaccaccttgtgcagccttgaattttcttctataaacatcaacagcagcagcatg 1054
||||| |||||||||| ||| ||||||||||||| || ||||||||||||||||||||
Sbjct: 801 tacttgaccaccttgtttagctctgaattttcttctgtagacatcaacagcagcagcatg 742
Query: 1055 agccaagatttggtgatgggcagccaag 1082
||| ||||| |||||||| ||||||||
Sbjct: 741 agctaagatctggtgatgaccagccaag 714
>gb|AL511635.1|AL511635 AL511635 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08L11u 3',
mRNA sequence
Length = 620
Score = 67.9 bits (34), Expect = 7e-010
Identities = 121/149 (81%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 269 agcctcgcccttgagcaagcgcgagaaccacagcgccgatgctttcgggtgcctggacag 328
||||||||| || || ||||| |||||||||| || |||||||| ||||| | ||| ||
Sbjct: 364 agcctcgccattcaggaagcgggagaaccacatggctgatgctttagggtgtcgggagag 423
Query: 329 cccgttcttgtagtccacgtaaactatgccgaacctcttggtgtagcccattgcccactc 388
||| |||||||| || || || || || || |||||||||||| | ||||| ||| ||||
Sbjct: 424 cccattcttgtaatcaacatagacaatcccaaacctcttggtgaatcccatcgccnactc 483
Query: 389 gaagttgtcc-aggaacgaccacgcaaag 416
||||| ||| ||||| ||||| ||||||
Sbjct: 484 aaagttatccaaggaatgaccatgcaaag 512
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||| | ||||||||| |||||
Sbjct: 326 ccactcgaagttgtccagcagcgaccacgcgaagta 361
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||||||||||||||| | ||||||||| |||||
Sbjct: 301 ccactcgaagttgtccagcagcgaccacgcgaagta 266
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,712
Number of Sequences: 312970
Number of extensions: 108712
Number of successful extensions: 26923
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26914
Number of HSP's gapped (non-prelim): 9
length of query: 1118
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1099
effective length of database: 169,188,109
effective search space: 185937731791
effective search space used: 185937731791
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)