BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF256552.2|BF256552 HVSMEf0010F04f Hordeum vulgare seedl... 500 e-140
gb|AV919156.1|AV919156 AV919156 K. Sato unpublished cDNA li... 500 e-140
gb|AV921718.1|AV921718 AV921718 K. Sato unpublished cDNA li... 500 e-140
gb|BJ463352.1|BJ463352 BJ463352 K. Sato unpublished cDNA li... 500 e-140
gb|BJ463970.1|BJ463970 BJ463970 K. Sato unpublished cDNA li... 500 e-140
gb|BQ658243.1|BQ658243 HB09P05w BC Hordeum vulgare subsp. v... 500 e-140
gb|BQ767952.1|BQ767952 EBro08_SQ010_E07_R root, 3 week, dro... 500 e-140
gb|BJ466302.1|BJ466302 BJ466302 K. Sato unpublished cDNA li... 494 e-138
gb|BJ462617.1|BJ462617 BJ462617 K. Sato unpublished cDNA li... 490 e-137
gb|BF258305.2|BF258305 HVSMEf0015F24f Hordeum vulgare seedl... 484 e-135
gb|BJ454281.1|BJ454281 BJ454281 K. Sato unpublished cDNA li... 476 e-133
gb|AV918871.1|AV918871 AV918871 K. Sato unpublished cDNA li... 472 e-132
gb|AV919513.1|AV919513 AV919513 K. Sato unpublished cDNA li... 472 e-132
gb|BE231175.2|BE231175 HVSMEg0017G06f Hordeum vulgare pre-a... 470 e-131
gb|AV917603.1|AV917603 AV917603 K. Sato unpublished cDNA li... 470 e-131
gb|AV921216.1|AV921216 AV921216 K. Sato unpublished cDNA li... 470 e-131
gb|BJ467706.1|BJ467706 BJ467706 K. Sato unpublished cDNA li... 470 e-131
gb|BJ467865.1|BJ467865 BJ467865 K. Sato unpublished cDNA li... 470 e-131
gb|BJ466237.1|BJ466237 BJ466237 K. Sato unpublished cDNA li... 468 e-130
gb|BQ763954.1|BQ763954 EBro03_SQ005_J20_R root, 3 week, wat... 468 e-130
gb|AV919679.1|AV919679 AV919679 K. Sato unpublished cDNA li... 466 e-130
gb|BQ658402.1|BQ658402 HB09E05w BC Hordeum vulgare subsp. v... 466 e-130
gb|AV919076.1|AV919076 AV919076 K. Sato unpublished cDNA li... 460 e-128
gb|CA017402.1|CA017402 HV05B15r HV Hordeum vulgare subsp. v... 460 e-128
gb|AV920629.1|AV920629 AV920629 K. Sato unpublished cDNA li... 440 e-122
gb|AV918649.1|AV918649 AV918649 K. Sato unpublished cDNA li... 438 e-121
gb|AV921346.1|AV921346 AV921346 K. Sato unpublished cDNA li... 436 e-121
gb|AV918391.1|AV918391 AV918391 K. Sato unpublished cDNA li... 432 e-120
gb|AV921342.1|AV921342 AV921342 K. Sato unpublished cDNA li... 426 e-118
gb|BJ457809.1|BJ457809 BJ457809 K. Sato unpublished cDNA li... 426 e-118
gb|BJ461814.1|BJ461814 BJ461814 K. Sato unpublished cDNA li... 426 e-118
gb|BQ660562.1|BQ660562 HI04D15u HI Hordeum vulgare subsp. v... 426 e-118
gb|BF254210.3|BF254210 HVSMEf0003F07f Hordeum vulgare seedl... 422 e-117
gb|BQ763511.1|BQ763511 EBro02_SQ008_I15_R root, 3 week, hyd... 420 e-116
gb|AV918957.1|AV918957 AV918957 K. Sato unpublished cDNA li... 418 e-115
gb|AV930865.1|AV930865 AV930865 K. Sato unpublished cDNA li... 412 e-114
gb|AV913541.1|AV913541 AV913541 K. Sato unpublished cDNA li... 410 e-113
gb|BM372796.2|BM372796 EBpi05_SQ003_P06_R pistil, 8 DPA, no... 408 e-112
gb|BJ465749.1|BJ465749 BJ465749 K. Sato unpublished cDNA li... 404 e-111
gb|AV922111.1|AV922111 AV922111 K. Sato unpublished cDNA li... 402 e-111
gb|BQ664682.1|BQ664682 HV04G11u HV Hordeum vulgare subsp. v... 402 e-111
gb|BI959211.1|BI959211 HVSMEn0018K15f Hordeum vulgare rachi... 400 e-110
gb|AV918994.1|AV918994 AV918994 K. Sato unpublished cDNA li... 398 e-109
gb|BU987625.1|BU987625 HF15E16r HF Hordeum vulgare subsp. v... 394 e-108
gb|AL510116.1|AL510116 AL510116 Hordeum vulgare Barke devel... 392 e-108
gb|AV913689.1|AV913689 AV913689 K. Sato unpublished cDNA li... 392 e-108
gb|BM370094.2|BM370094 EBro08_SQ002_P14_R root, 3 week, dro... 377 e-103
gb|BQ762329.1|BQ762329 EBro01_SQ005_C16_R root, 3 week, hyd... 375 e-102
gb|AL509971.1|AL509971 AL509971 Hordeum vulgare Barke devel... 373 e-102
gb|BF260651.2|BF260651 HVSMEf0022J07f Hordeum vulgare seedl... 373 e-102
gb|CB858420.1|CB858420 HI06P03w HI Hordeum vulgare subsp. v... 371 e-101
gb|CB874388.1|CB874388 HX05B24w HX Hordeum vulgare subsp. v... 371 e-101
gb|AV913736.1|AV913736 AV913736 K. Sato unpublished cDNA li... 369 e-101
gb|BG417116.1|BG417116 HVSMEk0016F09f Hordeum vulgare testa... 357 3e-097
gb|AV912428.1|AV912428 AV912428 K. Sato unpublished cDNA li... 351 2e-095
gb|CB880960.1|CB880960 HM08F16w HM Hordeum vulgare subsp. v... 337 3e-091
gb|BJ468273.1|BJ468273 BJ468273 K. Sato unpublished cDNA li... 331 2e-089
gb|BI958082.1|BI958082 HVSMEn0013D12f Hordeum vulgare rachi... 319 7e-086
gb|BJ467263.1|BJ467263 BJ467263 K. Sato unpublished cDNA li... 319 7e-086
gb|AV930869.1|AV930869 AV930869 K. Sato unpublished cDNA li... 315 1e-084
gb|BJ466118.1|BJ466118 BJ466118 K. Sato unpublished cDNA li... 315 1e-084
gb|AL502503.1|AL502503 AL502503 Hordeum vulgare Barke roots... 313 4e-084
gb|CA016125.1|CA016125 HV10D08u HV Hordeum vulgare subsp. v... 313 4e-084
gb|CA016785.1|CA016785 HV06E14u HV Hordeum vulgare subsp. v... 313 4e-084
gb|AL510212.1|AL510212 AL510212 Hordeum vulgare Barke devel... 305 1e-081
gb|BJ464957.1|BJ464957 BJ464957 K. Sato unpublished cDNA li... 305 1e-081
gb|BQ664074.1|BQ664074 HV01J15w HV Hordeum vulgare subsp. v... 303 4e-081
gb|AL511382.1|AL511382 AL511382 Hordeum vulgare Barke devel... 299 7e-080
gb|BG418023.1|BG418023 HVSMEk0020M24f Hordeum vulgare testa... 299 7e-080
gb|BJ465124.1|BJ465124 BJ465124 K. Sato unpublished cDNA li... 297 3e-079
gb|AL502326.1|AL502326 AL502326 Hordeum vulgare Barke roots... 291 2e-077
gb|BQ759253.1|BQ759253 EBpi01_SQ003_D23_R pistil, 1 DPA, no... 285 1e-075
gb|AV918959.1|AV918959 AV918959 K. Sato unpublished cDNA li... 283 4e-075
gb|AL512029.1|AL512029 AL512029 Hordeum vulgare Barke devel... 272 1e-071
gb|BM374409.2|BM374409 EBpi03_SQ003_I17_R pistil, 4 DPA, no... 264 4e-069
gb|AL501786.1|AL501786 AL501786 Hordeum vulgare Barke roots... 262 1e-068
gb|AV914047.1|AV914047 AV914047 K. Sato unpublished cDNA li... 260 6e-068
gb|BM443026.2|BM443026 EBro02_SQ002_D20_R root, 3 week, hyd... 258 2e-067
gb|AL501143.1|AL501143 AL501143 Hordeum vulgare Barke roots... 252 1e-065
gb|BM100250.2|BM100250 EBma01_SQ001_K06_R maternal, 4 DPA, ... 252 1e-065
gb|BM816179.1|BM816179 HC02E01_T3.ab1 HC Hordeum vulgare su... 250 5e-065
gb|BU994833.1|BU994833 HM08F16r HM Hordeum vulgare subsp. v... 244 3e-063
gb|AV910273.1|AV910273 AV910273 K. Sato unpublished cDNA li... 242 1e-062
gb|AL500988.1|AL500988 AL500988 Hordeum vulgare Barke roots... 228 2e-058
gb|BQ766960.1|BQ766960 EBro08_SQ007_H17_R root, 3 week, dro... 226 8e-058
gb|BU978745.1|BU978745 HA14C11r HA Hordeum vulgare subsp. v... 208 2e-052
gb|BI777035.2|BI777035 EBpi03_SQ001_L11_R pistil, 4 DPA, no... 204 3e-051
gb|CA028466.1|CA028466 HZ62B03r HZ Hordeum vulgare subsp. v... 198 2e-049
gb|AL500797.1|AL500797 AL500797 Hordeum vulgare Barke roots... 194 3e-048
gb|BJ464470.1|BJ464470 BJ464470 K. Sato unpublished cDNA li... 188 2e-046
gb|AV915529.1|AV915529 AV915529 K. Sato unpublished cDNA li... 186 7e-046
gb|AL510990.1|AL510990 AL510990 Hordeum vulgare Barke devel... 182 1e-044
gb|BU985320.1|BU985320 HF06M15r HF Hordeum vulgare subsp. v... 176 7e-043
gb|BI959184.1|BI959184 HVSMEn0018I15f Hordeum vulgare rachi... 163 1e-038
gb|BG415404.1|BG415404 HVSMEk0006F24f Hordeum vulgare testa... 143 9e-033
gb|AL511048.1|AL511048 AL511048 Hordeum vulgare Barke devel... 139 1e-031
gb|AL500628.1|AL500628 AL500628 Hordeum vulgare Barke roots... 137 6e-031
gb|AJ434107.1|AJ434107 AJ434107 S00002 Hordeum vulgare subs... 117 5e-025
gb|BQ756513.1|BQ756513 EBem09_SQ002_I18_R embryo, 1 Day ger... 117 5e-025
gb|BQ764503.1|BQ764503 EBca01_SQ004_F05_R carpel, pre-anthe... 117 5e-025
gb|BE519985.3|BE519985 HV_CEb0021P11f Hordeum vulgare seedl... 113 8e-024
gb|AL502411.1|AL502411 AL502411 Hordeum vulgare Barke roots... 109 1e-022
gb|AJ433815.1|AJ433815 AJ433815 S00002 Hordeum vulgare subs... 109 1e-022
gb|BM101169.2|BM101169 EBpi01_SQ003_B14_R pistil, 1 DPA, no... 109 1e-022
gb|AV917183.1|AV917183 AV917183 K. Sato unpublished cDNA li... 103 8e-021
gb|AV913569.1|AV913569 AV913569 K. Sato unpublished cDNA li... 101 3e-020
gb|AV916097.1|AV916097 AV916097 K. Sato unpublished cDNA li... 100 1e-019
gb|BJ463235.1|BJ463235 BJ463235 K. Sato unpublished cDNA li... 100 1e-019
gb|BI946633.1|BI946633 HVSMEl0001F12f Hordeum vulgare spike... 96 2e-018
gb|AJ433757.1|AJ433757 AJ433757 S00002 Hordeum vulgare subs... 96 2e-018
gb|BJ463694.1|BJ463694 BJ463694 K. Sato unpublished cDNA li... 94 8e-018
gb|BM096945.2|BM096945 EBpi07_SQ001_O03_R pistil, 12 DPA, n... 94 8e-018
gb|BU973256.1|BU973256 HB24E24r BC Hordeum vulgare subsp. v... 94 8e-018
gb|BQ472535.1|BQ472535 HB09E05T BC Hordeum vulgare subsp. v... 90 1e-016
gb|AV920923.1|AV920923 AV920923 K. Sato unpublished cDNA li... 88 5e-016
gb|BJ467168.1|BJ467168 BJ467168 K. Sato unpublished cDNA li... 88 5e-016
gb|BJ462500.1|BJ462500 BJ462500 K. Sato unpublished cDNA li... 86 2e-015
gb|BM100357.2|BM100357 EBma01_SQ001_P14_R maternal, 4 DPA, ... 82 3e-014
gb|BJ450393.1|BJ450393 BJ450393 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ464032.1|BJ464032 BJ464032 K. Sato unpublished cDNA li... 80 1e-013
gb|BJ464187.1|BJ464187 BJ464187 K. Sato unpublished cDNA li... 80 1e-013
gb|BM100838.1|BM100838 EBpi01_SQ002_C08_R pistil, 1 DPA, no... 78 5e-013
gb|BM101292.1|BM101292 EBpi01_SQ003_H01_R pistil, 1 DPA, no... 78 5e-013
gb|AJ436637.1|AJ436637 AJ436637 S00002 Hordeum vulgare subs... 78 5e-013
gb|BJ466023.1|BJ466023 BJ466023 K. Sato unpublished cDNA li... 78 5e-013
gb|BM445096.2|BM445096 EBem09_SQ007_G19_R embryo, 1 Day ger... 78 5e-013
gb|CA020908.1|CA020908 HZ38G01r HZ Hordeum vulgare subsp. v... 78 5e-013
gb|BU968354.1|BU968354 HB07E05r BC Hordeum vulgare subsp. v... 76 2e-012
gb|BM376735.2|BM376735 EBem05_SQ003_B13_R embryo, 14 DPA, n... 74 7e-012
gb|AL510003.1|AL510003 AL510003 Hordeum vulgare Barke devel... 72 3e-011
gb|AV920970.1|AV920970 AV920970 K. Sato unpublished cDNA li... 72 3e-011
gb|CK123742.1|CK123742 BES1824105d21 BES1824 Hordeum vulgar... 70 1e-010
gb|AL503252.1|AL503252 AL503252 Hordeum vulgare Barke roots... 68 4e-010
gb|AV916858.1|AV916858 AV916858 K. Sato unpublished cDNA li... 68 4e-010
gb|AV912858.1|AV912858 AV912858 K. Sato unpublished cDNA li... 64 7e-009
gb|AV921747.1|AV921747 AV921747 K. Sato unpublished cDNA li... 62 3e-008
gb|BU970086.1|BU970086 HB13I23r BC Hordeum vulgare subsp. v... 62 3e-008
gb|BU970369.1|BU970369 HB14G11r BC Hordeum vulgare subsp. v... 62 3e-008
gb|BU988522.1|BU988522 HF17O04r HF Hordeum vulgare subsp. v... 62 3e-008
gb|AV913652.1|AV913652 AV913652 K. Sato unpublished cDNA li... 56 2e-006
gb|AL510717.1|AL510717 AL510717 Hordeum vulgare Barke devel... 52 3e-005
gb|BF627578.2|BF627578 HVSMEb0005D17f Hordeum vulgare seedl... 52 3e-005
gb|BF258204.2|BF258204 HVSMEf0015B12f Hordeum vulgare seedl... 52 3e-005
gb|BI958920.1|BI958920 HVSMEn0017D23f Hordeum vulgare rachi... 52 3e-005
gb|BF253522.3|BF253522 HVSMEf0001C17f Hordeum vulgare seedl... 52 3e-005
gb|BE215685.3|BE215685 HV_CEb0007P22f Hordeum vulgare seedl... 52 3e-005
gb|AV909659.1|AV909659 AV909659 K. Sato unpublished cDNA li... 52 3e-005
gb|AV911559.1|AV911559 AV911559 K. Sato unpublished cDNA li... 52 3e-005
gb|AV914847.1|AV914847 AV914847 K. Sato unpublished cDNA li... 52 3e-005
gb|AV919157.1|AV919157 AV919157 K. Sato unpublished cDNA li... 52 3e-005
gb|AV921006.1|AV921006 AV921006 K. Sato unpublished cDNA li... 52 3e-005
gb|BM816655.1|BM816655 HB01A07_T3.ab1 HB Hordeum vulgare su... 52 3e-005
gb|AJ463158.1|AJ463158 AJ463158 S00002 Hordeum vulgare subs... 52 3e-005
gb|AJ463159.1|AJ463159 AJ463159 S00002 Hordeum vulgare subs... 52 3e-005
gb|BM101485.2|BM101485 EBpi01_SQ003_P22_R pistil, 1 DPA, no... 52 3e-005
gb|BM443008.2|BM443008 EBro02_SQ002_C21_R root, 3 week, hyd... 52 3e-005
gb|BQ757608.1|BQ757608 EBem10_SQ004_K13_R embryo, 2 Day ger... 52 3e-005
gb|BU970828.1|BU970828 HB15M21r BC Hordeum vulgare subsp. v... 52 3e-005
gb|BU972745.1|BU972745 HB22J12r BC Hordeum vulgare subsp. v... 52 3e-005
gb|BU996667.1|BU996667 HM14F14r HM Hordeum vulgare subsp. v... 52 3e-005
gb|CA002810.1|CA002810 HS08J14r HS Hordeum vulgare subsp. v... 52 3e-005
gb|BJ544684.1|BJ544684 BJ544684 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ544855.1|BJ544855 BJ544855 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ546155.1|BJ546155 BJ546155 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ546337.1|BJ546337 BJ546337 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ548879.1|BJ548879 BJ548879 K. Sato unpublished cDNA li... 52 3e-005
gb|CV062330.1|CV062330 BNEL78h1 Barley EST endosperm librar... 52 3e-005
gb|CV063225.1|CV063225 BNEL88a10 Barley EST endosperm libra... 52 3e-005
gb|BM816178.1|BM816178 HC01C12_T3.ab1 HC Hordeum vulgare su... 50 1e-004
gb|BI777152.2|BI777152 EBro03_SQ002_C19_R root, 3 week, wat... 50 1e-004
gb|AV922156.1|AV922156 AV922156 K. Sato unpublished cDNA li... 48 4e-004
gb|AV921050.1|AV921050 AV921050 K. Sato unpublished cDNA li... 46 0.002
gb|BJ549915.1|BJ549915 BJ549915 K. Sato unpublished cDNA li... 46 0.002
gb|BF260520.3|BF260520 HVSMEf0022D16f Hordeum vulgare seedl... 44 0.006
gb|AL502423.1|AL502423 AL502423 Hordeum vulgare Barke roots... 42 0.025
gb|BE455469.2|BE455469 HVSMEg0017F01f Hordeum vulgare pre-a... 40 0.099
gb|BE455988.2|BE455988 HVSMEg0019B24f Hordeum vulgare pre-a... 40 0.099
gb|BG418221.1|BG418221 HVSMEk0021P03f Hordeum vulgare testa... 40 0.099
gb|BI960078.1|BI960078 HVSMEn0023C04f Hordeum vulgare rachi... 40 0.099
gb|BJ449493.1|BJ449493 BJ449493 K. Sato unpublished cDNA li... 40 0.099
gb|BJ456934.1|BJ456934 BJ456934 K. Sato unpublished cDNA li... 40 0.099
gb|BM370165.2|BM370165 EBro08_SQ003_D02_R root, 3 week, dro... 40 0.099
gb|BU969174.1|BU969174 HB10M08r BC Hordeum vulgare subsp. v... 40 0.099
gb|BU972342.1|BU972342 HB21G01r BC Hordeum vulgare subsp. v... 40 0.099
gb|CB877081.1|CB877081 HP03I02T HP Hordeum vulgare subsp. v... 40 0.099
gb|CB879741.1|CB879741 HP03I02w HP Hordeum vulgare subsp. v... 40 0.099
gb|BF620279.2|BF620279 HVSMEc0019E20f Hordeum vulgare seedl... 38 0.39
gb|CB877082.1|CB877082 HP03I03T HP Hordeum vulgare subsp. v... 38 0.39
>gb|BF256552.2|BF256552 HVSMEf0010F04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010F04f, mRNA sequence
Length = 840
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 152 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 210
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 211 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 270
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 271 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 329
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 330 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 389
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 390 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 449
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 450 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 509
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 510 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 569
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 570 aagaaggccaaggcct 585
Score = 69.9 bits (35), Expect = 1e-010
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||| ||| |||||| |
Sbjct: 673 tttcgttacggaatttgagttccaataaaccaattacacctttgtcggtca-cttgaaag 731
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 732 attgtattattagaa 746
>gb|AV919156.1|AV919156 AV919156 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m06 3', mRNA sequence
Length = 721
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 611 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 553
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 552 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 493
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 492 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 434
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 374
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 314
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 313 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 254
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 253 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 194
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 193 aagaaggccaaggcct 178
Score = 63.9 bits (32), Expect = 7e-009
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || |||||||||||||| | || |
Sbjct: 90 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttcac--ttaaag 33
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 32 attgtattattagaa 18
>gb|AV921718.1|AV921718 AV921718 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12h18 3', mRNA sequence
Length = 626
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 553 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 495
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 494 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 435
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 434 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 376
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 316
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 256
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 255 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 196
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 195 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 136
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 135 aagaaggccaaggcct 120
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaac 545
|||| |||||||||||||||||||||||||
Sbjct: 32 tttcgttacggaatttgagttccaataaac 3
>gb|BJ463352.1|BJ463352 BJ463352 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27b23 5', mRNA sequence
Length = 635
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 115 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 173
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 174 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 233
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 234 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 292
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 352
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 353 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 412
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 413 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 472
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 473 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 532
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 533 aagaaggccaaggcct 548
>gb|BJ463970.1|BJ463970 BJ463970 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e18 5', mRNA sequence
Length = 623
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 100 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 158
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 159 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 218
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 219 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 277
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 278 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 337
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 397
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 398 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 457
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 458 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 517
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 518 aagaaggccaaggcct 533
>gb|BQ658243.1|BQ658243 HB09P05w BC Hordeum vulgare subsp. vulgare cDNA clone HB09P05
3-PRIME, mRNA sequence
Length = 665
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 604 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 546
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 545 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 486
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 485 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 427
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 426 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 367
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 307
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 306 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 247
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 246 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 187
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 186 aagaaggccaaggcct 171
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 83 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 25
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 24 attgtattattagaa 10
>gb|BQ767952.1|BQ767952 EBro08_SQ010_E07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_E07 5', mRNA sequence
Length = 605
Score = 500 bits (252), Expect = e-140
Identities = 392/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 59 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 117
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 118 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 177
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 178 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 236
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 237 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 296
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 297 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 356
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 357 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 416
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 417 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 476
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 477 aagaaggccaaggcct 492
Score = 42.1 bits (21), Expect = 0.025
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaa 540
|||| ||||||||||||||||||||
Sbjct: 581 tttcgttacggaatttgagttccaa 605
>gb|BJ466302.1|BJ466302 BJ466302 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31i13 3', mRNA sequence
Length = 582
Score = 494 bits (249), Expect = e-138
Identities = 391/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 573 caacacctatggacntaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 515
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 514 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 455
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 454 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 396
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 395 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 336
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 335 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 276
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 275 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 216
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 215 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 156
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 155 aagaaggccaaggcct 140
Score = 40.1 bits (20), Expect = 0.099
Identities = 45/52 (86%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcac 567
|||| ||||||||||| ||||||||||||| | || ||||||||||||||
Sbjct: 52 tttcgttacggaattt-agttccaataaaccaattacacctttgtcgttcac 2
>gb|BJ462617.1|BJ462617 BJ462617 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i05 5', mRNA sequence
Length = 604
Score = 490 bits (247), Expect = e-137
Identities = 381/423 (90%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 184 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 242
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 243 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 302
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 303 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 361
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 362 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 421
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 481
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 482 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 541
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 542 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 601
Query: 421 aag 423
|||
Sbjct: 602 aag 604
>gb|BF258305.2|BF258305 HVSMEf0015F24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015F24f, mRNA sequence
Length = 745
Score = 484 bits (244), Expect = e-135
Identities = 390/436 (89%), Gaps = 2/436 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 88 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 146
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 147 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 206
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 207 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 265
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 325
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct: 326 aaggagttgatcaacccagaggtgacagcgacgatgactgagaacactcctgatgaccct 385
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||| ||| ||
Sbjct: 386 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagccgaaggtc 445
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgccc 420
||||| || ||||||||||||||||||||||| || ||||||||||| || | ||||||
Sbjct: 446 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcgtttggcagtgccc 505
Query: 421 aagaaaaccaaggcct 436
||||| |||||||||
Sbjct: 506 aagaaggccaaggcct 521
Score = 50.1 bits (25), Expect = 1e-004
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 522 tacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaaggattgta 581
|||||||||||||||||||||||| | || ||||||||| ||| |||||| || || |
Sbjct: 615 tacggaatttgagttccaataaaccaattacacctttgtcggtca-cttgaaagaatgca 673
Query: 582 ttattagaa 590
|||||||||
Sbjct: 674 ttattagaa 682
>gb|BJ454281.1|BJ454281 BJ454281 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46n15 5', mRNA sequence
Length = 614
Score = 476 bits (240), Expect = e-133
Identities = 356/392 (90%), Gaps = 2/392 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 224 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 282
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 283 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 342
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 343 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 401
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 402 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 461
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 521
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| |||||||||||||| ||||| ||||| | |||||||||||| ||
Sbjct: 522 cgccagaggaagcctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtc 581
Query: 361 gtcctgcgggacggcttggtgctcatggagga 392
||||| || |||||||||||||||||||||||
Sbjct: 582 gtcctacgtgacggcttggtgctcatggagga 613
>gb|AV918871.1|AV918871 AV918871 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i15 3', mRNA sequence
Length = 630
Score = 472 bits (238), Expect = e-132
Identities = 375/418 (89%), Gaps = 2/418 (0%)
Strand = Plus / Minus
Query: 19 gatgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtg 78
|||||||||||||||||||||||||| ||| |||||||| ||||||||| | || ||||
Sbjct: 630 gatgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtg 572
Query: 79 agcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgat 138
| ||||||||||||||| ||||||||||||||||||||| || |||||| ||||| |||
Sbjct: 571 aagccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgat 513
Query: 139 atggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggg 198
||||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | |||
Sbjct: 512 atggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggg 453
Query: 199 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaaccca 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 aacccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaaccca 393
Query: 259 gatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggac 318
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 392 gaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgac 333
Query: 319 atcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttg 378
||||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||
Sbjct: 332 atcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttg 273
Query: 379 gtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 272 gtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 215
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 127 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 69
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 68 attgtattattagaa 54
>gb|AV919513.1|AV919513 AV919513 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6f24 3', mRNA sequence
Length = 658
Score = 472 bits (238), Expect = e-132
Identities = 375/418 (89%), Gaps = 2/418 (0%)
Strand = Plus / Minus
Query: 19 gatgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtg 78
|||||||||||||||||||||||||| ||| |||||||| ||||||||| | || ||||
Sbjct: 658 gatgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtg 600
Query: 79 agcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgat 138
| ||||||||||||||| ||||||||||||||||||||| || |||||| ||||| |||
Sbjct: 599 aagccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgat 541
Query: 139 atggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggg 198
||||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | |||
Sbjct: 540 atggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggg 481
Query: 199 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaaccca 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 480 aacccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaaccca 421
Query: 259 gatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggac 318
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 420 gaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgac 361
Query: 319 atcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttg 378
||||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||
Sbjct: 360 atcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttg 301
Query: 379 gtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 300 gtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 243
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 155 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 97
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 96 attgtattattagaa 82
>gb|BE231175.2|BE231175 HVSMEg0017G06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017G06f, mRNA sequence
Length = 939
Score = 470 bits (237), Expect = e-131
Identities = 366/407 (89%), Gaps = 2/407 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 208 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 266
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 267 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 326
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 327 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 385
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 445
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 aaggagttgatcaacccagaagtgacagtgacgatgactgagaacactcctgatgaccct 505
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
||||||| |||||| |||||||||||||| |||| ||||| | |||||||||| | ||
Sbjct: 506 cgccagaagaagcctgacatcacaaaggcanaggaggttcttgactgggagcccanggtc 565
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcg 407
||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct: 566 gtcctacgtgacggcttggtgctcatggaggacgacttccgggagcg 612
>gb|AV917603.1|AV917603 AV917603 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j24 3', mRNA sequence
Length = 682
Score = 470 bits (237), Expect = e-131
Identities = 374/417 (89%), Gaps = 2/417 (0%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
||||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 682 atgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtga 624
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||
Sbjct: 623 agccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgata 565
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 564 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 505
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 acccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccag 445
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 444 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 385
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 384 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 325
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 324 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 268
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 180 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 122
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 121 attgtattattagaa 107
>gb|AV921216.1|AV921216 AV921216 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1h02 3', mRNA sequence
Length = 628
Score = 470 bits (237), Expect = e-131
Identities = 374/417 (89%), Gaps = 2/417 (0%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
||||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 628 atgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtga 570
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||
Sbjct: 569 agccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgata 511
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 510 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 451
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 450 acccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccag 391
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 390 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 331
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 330 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 271
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 270 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 214
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 125 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 67
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 66 attgtattattagaa 52
>gb|BJ467706.1|BJ467706 BJ467706 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i05 3', mRNA sequence
Length = 683
Score = 470 bits (237), Expect = e-131
Identities = 374/417 (89%), Gaps = 2/417 (0%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
||||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 683 atgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtga 625
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||
Sbjct: 624 agccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgata 566
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 565 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 506
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 acccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccag 446
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 445 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 386
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 385 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 326
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 325 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 269
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 181 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 123
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 122 attgtattattagaa 108
>gb|BJ467865.1|BJ467865 BJ467865 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30b17 3', mRNA sequence
Length = 630
Score = 470 bits (237), Expect = e-131
Identities = 374/417 (89%), Gaps = 2/417 (0%)
Strand = Plus / Minus
Query: 20 atgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
||||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 630 atgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtga 572
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||
Sbjct: 571 agccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgata 513
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 512 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 453
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 acccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccag 393
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 392 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 333
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 332 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 273
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 272 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 216
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 128 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 70
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 69 attgtattattagaa 55
>gb|BJ466237.1|BJ466237 BJ466237 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e18 3', mRNA sequence
Length = 628
Score = 468 bits (236), Expect = e-130
Identities = 373/416 (89%), Gaps = 2/416 (0%)
Strand = Plus / Minus
Query: 21 tgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgag 80
|||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 628 tgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaa 570
Query: 81 cccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatat 140
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| |||||
Sbjct: 569 gccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatat 511
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | |||||
Sbjct: 510 ggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaa 451
Query: 201 cccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccaga 260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 450 cccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccaga 391
Query: 261 tgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacat 320
||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 390 ggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacat 331
Query: 321 cacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggt 380
||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||||
Sbjct: 330 cacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggt 271
Query: 381 gctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 270 gctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 215
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 127 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 69
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 68 attgtattattagaa 54
>gb|BQ763954.1|BQ763954 EBro03_SQ005_J20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_J20 5', mRNA sequence
Length = 622
Score = 468 bits (236), Expect = e-130
Identities = 373/416 (89%), Gaps = 2/416 (0%)
Strand = Plus / Plus
Query: 21 tgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgag 80
|||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 1 tgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaa 59
Query: 81 cccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatat 140
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| |||||
Sbjct: 60 gccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatat 118
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | |||||
Sbjct: 119 ggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaa 178
Query: 201 cccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccaga 260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 179 cccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccaga 238
Query: 261 tgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacat 320
||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 239 ggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacat 298
Query: 321 cacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggt 380
||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||||
Sbjct: 299 cacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggt 358
Query: 381 gctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 359 gctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 414
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 503 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 561
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 562 attgtattattagaa 576
>gb|AV919679.1|AV919679 AV919679 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7b24 3', mRNA sequence
Length = 628
Score = 466 bits (235), Expect = e-130
Identities = 372/415 (89%), Gaps = 2/415 (0%)
Strand = Plus / Minus
Query: 22 gaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagc 81
||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 628 gaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaag 570
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 569 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 511
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 510 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 451
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 450 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 391
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 390 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 331
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 330 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 271
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 270 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 216
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 128 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 70
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 69 attgtattattagaa 55
>gb|BQ658402.1|BQ658402 HB09E05w BC Hordeum vulgare subsp. vulgare cDNA clone HB09E05
3-PRIME, mRNA sequence
Length = 660
Score = 466 bits (235), Expect = e-130
Identities = 372/415 (89%), Gaps = 2/415 (0%)
Strand = Plus / Minus
Query: 22 gaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagc 81
||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 660 gaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaag 602
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 601 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 543
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 542 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 483
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 482 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 423
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 422 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 363
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 362 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 303
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 302 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 248
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 160 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 102
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 101 attgtattattagaa 87
>gb|AV919076.1|AV919076 AV919076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4f20 3', mRNA sequence
Length = 594
Score = 460 bits (232), Expect = e-128
Identities = 376/420 (89%), Gaps = 3/420 (0%)
Strand = Plus / Minus
Query: 18 ggatgaacattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggt 77
||||||||||||||||||||||||||| ||| |||||||| ||||||||| | || |||
Sbjct: 594 ggatgaacattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggt 536
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|| ||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||
Sbjct: 535 gaagccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctga 477
Query: 138 tatggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggg 197
|||||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||
Sbjct: 476 tatggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgg 417
Query: 198 gaacccagg-tgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacc 256
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 416 gaacccagggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacc 357
Query: 257 cagatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccgg 316
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 356 cagaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctg 297
Query: 317 acatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggct 376
||||||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||
Sbjct: 296 acatcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggct 237
Query: 377 tggtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 236 tggtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 177
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 89 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 31
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 30 attgtattattagaa 16
>gb|CA017402.1|CA017402 HV05B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B15
5-PRIME, mRNA sequence
Length = 476
Score = 460 bits (232), Expect = e-128
Identities = 369/412 (89%), Gaps = 2/412 (0%)
Strand = Plus / Plus
Query: 25 cattgatgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagcccc 84
|||||||||||||||||||| ||| |||||||| ||||||||| | || ||||| |||
Sbjct: 11 cattgatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaagccc 69
Query: 85 tgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatggtt 144
|||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||||
Sbjct: 70 tgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatggtc 128
Query: 145 gatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaaccca 204
|||||||||| ||||||||||||||| |||| |||||||| |||||| | |||||||||
Sbjct: 129 aatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaaccca 188
Query: 205 ggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtg 264
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 189 ggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtg 248
Query: 265 acagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatcaca 324
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 249 acagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatcaca 308
Query: 325 aaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctc 384
||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||||||||
Sbjct: 309 aaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctc 368
Query: 385 atggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 369 atggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 420
>gb|AV920629.1|AV920629 AV920629 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14p07 3', mRNA sequence
Length = 694
Score = 440 bits (222), Expect = e-122
Identities = 373/418 (89%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 21 tgaacattga-tgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtga 79
|||||||||| |||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 694 tgaacattgaatgatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtga 636
Query: 80 gcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgata 139
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||
Sbjct: 635 agccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgata 577
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 576 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 517
Query: 200 acccagg-tgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaaccca 258
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 516 acccagggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaaccca 457
Query: 259 gatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggac 318
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 456 gaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgac 397
Query: 319 atcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttg 378
||||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||
Sbjct: 396 atcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttg 337
Query: 379 gtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 336 gtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 279
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 191 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 133
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 132 attgtattattagaa 118
>gb|AV918649.1|AV918649 AV918649 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m04 3', mRNA sequence
Length = 620
Score = 438 bits (221), Expect = e-121
Identities = 358/401 (89%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 36 gccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagcccctgactgtccag 95
||||||||| ||| |||||||| ||||||||| | || ||||| ||||||||||||||
Sbjct: 620 gccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaagccctgactgtccag 562
Query: 96 aggccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttat 155
| ||||||||||||||||||||| || |||||| ||||| |||||||| ||||||||||
Sbjct: 561 aagccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttat 503
Query: 156 taagctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcac 215
||||||||||||||| |||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 502 gaagctgatgaatggagacaacactggacccattaacattgggaacccaggtgaattcac 443
Query: 216 catgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgat 275
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 catgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgat 383
Query: 276 gaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaagga 335
||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 382 gactgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaagga 323
Query: 336 agttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatga 395
||||| | |||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct: 322 ggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacga 263
Query: 396 tttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || | ||||||||||| |||||||||
Sbjct: 262 cttccgggagcgtttggcagtgcccaagaaggccaaggcct 222
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 134 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 76
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 75 attgtattattagaa 61
>gb|AV921346.1|AV921346 AV921346 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23b23 3', mRNA sequence
Length = 613
Score = 436 bits (220), Expect = e-121
Identities = 357/400 (89%), Gaps = 2/400 (0%)
Strand = Plus / Minus
Query: 37 ccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagcccctgactgtccaga 96
|||||||| ||| |||||||| ||||||||| | || ||||| |||||||||||||||
Sbjct: 613 ccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaagccctgactgtccaga 555
Query: 97 ggccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttatt 156
||||||||||||||||||||| || |||||| ||||| |||||||| ||||||||||
Sbjct: 554 agccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatg 496
Query: 157 aagctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcacc 216
||||||||||||||| |||| |||||||| |||||| | |||||||||||||||||||||
Sbjct: 495 aagctgatgaatggagacaacactggacccattaacattgggaacccaggtgaattcacc 436
Query: 217 atgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatg 276
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 atgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatg 376
Query: 277 accgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaa 336
|| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 375 actgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggag 316
Query: 337 gttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgat 396
||||| | |||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct: 315 gttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgac 256
Query: 397 ttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || | ||||||||||| |||||||||
Sbjct: 255 ttccgggagcgtttggcagtgcccaagaaggccaaggcct 216
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 128 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 70
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 69 attgtattattagaa 55
>gb|AV918391.1|AV918391 AV918391 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o08 3', mRNA sequence
Length = 699
Score = 432 bits (218), Expect = e-120
Identities = 372/418 (88%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 22 gaacattga-tgatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgag 80
||||||||| |||||||||||||| ||| |||||||| ||||||||| | || |||||
Sbjct: 699 gaacattgaatgatggccgtgttgttagtaacttcatttgctcaggccatacgtggtgaa 640
Query: 81 cccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatat 140
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| |||||
Sbjct: 639 gccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatat 581
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | |||||
Sbjct: 580 ggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaa 521
Query: 201 cccagg-tgaattcaccatgctggaacttgctgagaatgtgaa-ggagttgatcaaccca 258
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 520 cccagggtgaattcaccatgctggaacttgctgagaacgtgaaaggagttgatcaaccca 461
Query: 259 gatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggac 318
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 460 gaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgac 401
Query: 319 atcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttg 378
||||||||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||
Sbjct: 400 atcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttg 341
Query: 379 gtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 340 gtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 283
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 195 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 137
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 136 attgtattattagaa 122
>gb|AV921342.1|AV921342 AV921342 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23b18 3', mRNA sequence
Length = 635
Score = 426 bits (215), Expect = e-118
Identities = 321/355 (90%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 634 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 576
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 575 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 516
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 515 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 456
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 455 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 396
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 395 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 336
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 335 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 281
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 193 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 135
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 134 attgtattattagaa 120
>gb|BJ457809.1|BJ457809 BJ457809 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29f24 3', mRNA sequence
Length = 605
Score = 426 bits (215), Expect = e-118
Identities = 321/355 (90%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 571 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 513
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 512 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 453
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 452 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 393
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 392 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 333
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 332 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 273
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 272 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 218
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 127 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 69
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 68 attgtattattagaa 54
>gb|BJ461814.1|BJ461814 BJ461814 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46n15 3', mRNA sequence
Length = 613
Score = 426 bits (215), Expect = e-118
Identities = 321/355 (90%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 612 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 554
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 553 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 494
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 493 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 434
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 433 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 374
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 373 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 314
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 313 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 259
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 168 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 110
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 109 attgtattattagaa 95
>gb|BQ660562.1|BQ660562 HI04D15u HI Hordeum vulgare subsp. vulgare cDNA clone HI04D15
3-PRIME, mRNA sequence
Length = 517
Score = 426 bits (215), Expect = e-118
Identities = 321/355 (90%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 491 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 433
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 432 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 373
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 313
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 312 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 253
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 252 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 193
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 192 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 138
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttc 565
|||| ||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 50 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttc 1
>gb|BF254210.3|BF254210 HVSMEf0003F07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003F07f, mRNA sequence
Length = 828
Score = 422 bits (213), Expect = e-117
Identities = 323/357 (90%), Gaps = 2/357 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 127 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 185
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 186 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 245
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 246 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 304
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 305 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 364
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 365 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 424
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaag 357
|||||||||||||| ||||| |||||||| ||||| ||||| | ||||||||||||
Sbjct: 425 cgccagaggaagcctgacatgacaaaggcaaaggaggttcttgactgggagcccaag 481
>gb|BQ763511.1|BQ763511 EBro02_SQ008_I15_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_I15 5', mRNA sequence
Length = 553
Score = 420 bits (212), Expect = e-116
Identities = 312/344 (90%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 34 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 92
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 93 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 152
Query: 202 ccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagat 261
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 153 ccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagag 212
Query: 262 gtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatc 321
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 213 gtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatc 272
Query: 322 acaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtg 381
|||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||||
Sbjct: 273 acaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtg 332
Query: 382 ctcatggaggatgatttccgggagcgcctgaccgtgcccaagaa 425
||||||||||| || ||||||||||| || | |||||||||||
Sbjct: 333 ctcatggaggacgacttccgggagcgtttggcagtgcccaagaa 376
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 472 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 530
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 531 attgtattattagaa 545
>gb|AV918957.1|AV918957 AV918957 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22n04 3', mRNA sequence
Length = 671
Score = 418 bits (211), Expect = e-115
Identities = 362/407 (88%), Gaps = 4/407 (0%)
Strand = Plus / Minus
Query: 32 gatggccgtgttgctagcaacttcatctgctcaggctgtgcgcggtgagcccctgactgt 91
||||||||||||| ||| |||||||| ||||||||| | || ||||| ||||||||||
Sbjct: 671 gatggccgtgttgttagtaacttcat-tgctcaggccatacgtggtgaagccctgactgt 613
Query: 92 ccagaggccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtc 151
||||| ||||||||||||||||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 612 ccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtc 554
Query: 152 ttattaagctgatgaatggaaacaagactggaccgattaacttggggaacccagg-tgaa 210
|||| ||||||||||||||| |||| |||||||| |||||| | ||||||||||| ||||
Sbjct: 553 ttatgaagctgatgaatggagacaacactggacccattaacattgggaacccagggtgaa 494
Query: 211 ttcaccatgctggaacttgctgagaatgtgaa-ggagttgatcaacccagatgtgacagt 269
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct: 493 ttcaccatgctggaacttgctgagaacgtgaaaggagttgatcaacccagaggtgacagt 434
Query: 270 gacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggc 329
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 433 gacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggc 374
Query: 330 gaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatgga 389
||||| ||||| | |||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 373 aaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatgga 314
Query: 390 ggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 313 ggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 267
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 179 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 121
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 120 attgtattattagaa 106
>gb|AV930865.1|AV930865 AV930865 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25i24 3', mRNA sequence
Length = 506
Score = 412 bits (208), Expect = e-114
Identities = 314/348 (90%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 89 tgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatggttgatg 148
|||||||| ||||||||||||||||||||| || |||||| ||||| |||||||| |||
Sbjct: 506 tgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatg 448
Query: 149 gtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaacccaggtg 208
||||||| ||||||||||||||| |||| |||||||| |||||| | |||||||||||||
Sbjct: 447 gtcttatgaagctgatgaatggagacaacactggacccattaacattgggaacccaggtg 388
Query: 209 aattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacag 268
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 387 aattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacag 328
Query: 269 tgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaagg 328
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 327 tgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaagg 268
Query: 329 cgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatgg 388
| ||||| ||||| | |||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 267 caaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatgg 208
Query: 389 aggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 207 aggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 160
Score = 52.0 bits (26), Expect = 3e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaac 545
|||| |||||||||||||||||||||||||
Sbjct: 71 tttcgttacggaatttgagttccaataaac 42
>gb|AV913541.1|AV913541 AV913541 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22h07 5', mRNA sequence
Length = 573
Score = 410 bits (207), Expect = e-113
Identities = 299/327 (91%), Gaps = 2/327 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 249 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 307
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 308 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 367
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 368 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 426
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 486
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 546
Query: 301 cgccagaggaagccggacatcacaaag 327
|||||||||||||| ||||||||||||
Sbjct: 547 cgccagaggaagcctgacatcacaaag 573
>gb|BM372796.2|BM372796 EBpi05_SQ003_P06_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_P06 5', mRNA sequence
Length = 563
Score = 408 bits (206), Expect = e-112
Identities = 298/326 (91%), Gaps = 2/326 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 240 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 298
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 299 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 358
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 359 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 417
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 418 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 477
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 478 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 537
Query: 301 cgccagaggaagccggacatcacaaa 326
|||||||||||||| |||||||||||
Sbjct: 538 cgccagaggaagcctgacatcacaaa 563
>gb|BJ465749.1|BJ465749 BJ465749 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27b23 3', mRNA sequence
Length = 563
Score = 404 bits (204), Expect = e-111
Identities = 317/352 (90%), Gaps = 2/352 (0%)
Strand = Plus / Minus
Query: 86 gactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatggttg 145
||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||||
Sbjct: 563 gactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatggtca 505
Query: 146 atggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaacccag 205
|||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||||||
Sbjct: 504 atggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaacccag 445
Query: 206 g-tgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtg 264
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 444 ggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtg 385
Query: 265 acagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacatcaca 324
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 384 acagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgacatcaca 325
Query: 325 aaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctc 384
||||| ||||| ||||| | |||||||||||| ||||||| || |||||||||||||||
Sbjct: 324 aaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctc 265
Query: 385 atggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 264 atggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 213
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 125 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 67
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 66 attgtattattagaa 52
>gb|AV922111.1|AV922111 AV922111 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19l17 3', mRNA sequence
Length = 513
Score = 402 bits (203), Expect = e-111
Identities = 306/339 (90%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 98 gccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttatta 157
||||||||||||||||||||| || |||||| ||||| |||||||| |||||||||| |
Sbjct: 513 gccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatga 455
Query: 158 agctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcacca 217
|||||||||||||| |||| |||||||| |||||| | ||||||||||||||||||||||
Sbjct: 454 agctgatgaatggagacaacactggacccattaacattgggaacccaggtgaattcacca 395
Query: 218 tgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatga 277
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 394 tgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatga 335
Query: 278 ccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaag 337
| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct: 334 ctgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggagg 275
Query: 338 ttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatt 397
|||| | |||||||||||| ||||||| || ||||||||||||||||||||||| || |
Sbjct: 274 ttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgact 215
Query: 398 tccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||| || | ||||||||||| |||||||||
Sbjct: 214 tccgggagcgtttggcagtgcccaagaaggccaaggcct 176
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 88 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 30
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 29 attgtattattagaa 15
>gb|BQ664682.1|BQ664682 HV04G11u HV Hordeum vulgare subsp. vulgare cDNA clone HV04G11
3-PRIME, mRNA sequence
Length = 580
Score = 402 bits (203), Expect = e-111
Identities = 306/339 (90%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 98 gccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttatta 157
||||||||||||||||||||| || |||||| ||||| |||||||| |||||||||| |
Sbjct: 577 gccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatga 519
Query: 158 agctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcacca 217
|||||||||||||| |||| |||||||| |||||| | ||||||||||||||||||||||
Sbjct: 518 agctgatgaatggagacaacactggacccattaacattgggaacccaggtgaattcacca 459
Query: 218 tgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatga 277
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 458 tgctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatga 399
Query: 278 ccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaag 337
| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct: 398 ctgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggagg 339
Query: 338 ttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatt 397
|||| | |||||||||||| ||||||| || ||||||||||||||||||||||| || |
Sbjct: 338 ttcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgact 279
Query: 398 tccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||||||| || | ||||||||||| |||||||||
Sbjct: 278 tccgggagcgtttggcagtgcccaagaaggccaaggcct 240
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 152 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 94
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 93 attgtattattagaa 79
>gb|BI959211.1|BI959211 HVSMEn0018K15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018K15f, mRNA sequence
Length = 653
Score = 400 bits (202), Expect = e-110
Identities = 305/338 (90%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 99 ccaggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttattaa 158
|||||||||||||||||||| || |||||| ||||| |||||||| |||||||||| ||
Sbjct: 653 ccaggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatgaa 595
Query: 159 gctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcaccat 218
||||||||||||| |||| |||||||| |||||| | |||||||||||||||||||||||
Sbjct: 594 gctgatgaatggagacaacactggacccattaacattgggaacccaggtgaattcaccat 535
Query: 219 gctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatgac 278
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 534 gctggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatgac 475
Query: 279 cgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagt 338
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 474 tgagaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggaggt 415
Query: 339 tctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgattt 398
||| | |||||||||||| ||||||| || ||||||||||||||||||||||| || ||
Sbjct: 414 tcttgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgactt 355
Query: 399 ccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||| || | ||||||||||| |||||||||
Sbjct: 354 ccgggagcgtttggcagtgcccaagaaggccaaggcct 317
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 229 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 171
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 170 attgtattattagaa 156
>gb|AV918994.1|AV918994 AV918994 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22p11 3', mRNA sequence
Length = 536
Score = 398 bits (201), Expect = e-109
Identities = 321/357 (89%), Gaps = 3/357 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatatg 141
||||||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||
Sbjct: 532 ccctgactgtccagaagccaggaacacagactaggagctt-ctgctacgttgctgatatg 474
Query: 142 gttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaac 201
|| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||
Sbjct: 473 gtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattgggaac 414
Query: 202 ccagg-tgaattcaccatgctggaacttgctgagaatgtgaa-ggagttgatcaacccag 259
||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 413 ccagggtgaattcaccatgctggaacttgctgagaacgtgaaaggagttgatcaacccag 354
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 353 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 294
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 293 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 234
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 233 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 177
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 89 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 31
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 30 attgtattattagaa 16
>gb|BU987625.1|BU987625 HF15E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF15E16
5-PRIME, mRNA sequence
Length = 624
Score = 394 bits (199), Expect = e-108
Identities = 302/335 (90%), Gaps = 1/335 (0%)
Strand = Plus / Plus
Query: 102 ggaacacagactaggagttttctgctatgttgccgatatggttgatggtcttattaagct 161
||||||||||||||||| || |||||| ||||| |||||||| |||||||||| |||||
Sbjct: 1 ggaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatgaagct 59
Query: 162 gatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcaccatgct 221
|||||||||| |||| |||||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 60 gatgaatggagacaacactggacccattaacattgggaacccaggtgaattcaccatgct 119
Query: 222 ggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccga 281
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 120 ggaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatgactga 179
Query: 282 gaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttct 341
|||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 180 gaacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggaggttct 239
Query: 342 gggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccg 401
| |||||||||||| ||||||| || ||||||||||||||||||||||| || |||||
Sbjct: 240 tgactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgacttccg 299
Query: 402 ggagcgcctgaccgtgcccaagaaaaccaaggcct 436
|||||| || | ||||||||||| |||||||||
Sbjct: 300 ggagcgtttggcagtgcccaagaaggccaaggcct 334
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 422 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 480
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 481 attgtattattagaa 495
>gb|AL510116.1|AL510116 AL510116 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03P08u 3',
mRNA sequence
Length = 639
Score = 392 bits (198), Expect = e-108
Identities = 320/357 (89%), Gaps = 3/357 (0%)
Strand = Plus / Minus
Query: 82 ccctgactgtcc-agaggccaggaacacagact-aggagttttctgctatgttgccgata 139
|||||||||||| ||| |||||||||||||||| ||||| || ||||| ||||| ||||
Sbjct: 544 ccctgactgtcccagaagccaggaacacagacttaggagctt-ctgctncgttgctgata 486
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
|||| |||||||||| ||||||||||||||| |||| |||||||| |||||| | ||||
Sbjct: 485 tggtcaatggtcttatgaagctgatgaatggagacaacactggacccattaacattggga 426
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 acccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatcaacccag 366
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 365 aggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagcctgaca 306
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
|||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||||||||
Sbjct: 305 tcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacggcttgg 246
Query: 380 tgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||||||||||| || ||||||||||| || | ||||||||||| |||||||||
Sbjct: 245 tgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaaggcct 189
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 101 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 43
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 42 attgtattattagaa 28
>gb|AV913689.1|AV913689 AV913689 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22p11 5', mRNA sequence
Length = 536
Score = 392 bits (198), Expect = e-108
Identities = 301/334 (90%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 103 gaacacagactaggagttttctgctatgttgccgatatggttgatggtcttattaagctg 162
|||||||||||||||| || |||||| ||||| |||||||| |||||||||| ||||||
Sbjct: 1 gaacacagactaggagctt-ctgctacgttgctgatatggtcaatggtcttatgaagctg 59
Query: 163 atgaatggaaacaagactggaccgattaacttggggaacccaggtgaattcaccatgctg 222
||||||||| |||| |||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 60 atgaatggagacaacactggacccattaacattgggaacccaggtgaattcaccatgctg 119
Query: 223 gaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccgag 282
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 120 gaacttgctgagaacgtgaaggagttgatcaacccagaggtgacagtgacgatgactgag 179
Query: 283 aacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctg 342
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 180 aacactcctgatgaccctcgccagaggaagcctgacatcacaaaggcaaaggaggttctt 239
Query: 343 ggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgg 402
| |||||||||||| ||||||| || ||||||||||||||||||||||| || ||||||
Sbjct: 240 gactgggagcccaaggtcgtcctacgtgacggcttggtgctcatggaggacgacttccgg 299
Query: 403 gagcgcctgaccgtgcccaagaaaaccaaggcct 436
||||| || | ||||||||||| |||||||||
Sbjct: 300 gagcgtttggcagtgcccaagaaggccaaggcct 333
Score = 63.9 bits (32), Expect = 7e-009
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcc-tttgtcgttcaccttgaag 574
|||| ||||||||||||||||||||||||| | || || ||||||||||| ||||||
Sbjct: 421 tttcgttacggaatttgagttccaataaaccaattacaccttttgtcgttca-cttgaaa 479
Query: 575 gattgtattattagaa 590
||||||||||||||||
Sbjct: 480 gattgtattattagaa 495
>gb|BM370094.2|BM370094 EBro08_SQ002_P14_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_P14 5', mRNA sequence
Length = 590
Score = 377 bits (190), Expect = e-103
Identities = 279/306 (91%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 287 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 345
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 346 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 405
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 406 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 464
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 465 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 524
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 525 aaggagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 584
Query: 301 cgccag 306
||||||
Sbjct: 585 cgccag 590
>gb|BQ762329.1|BQ762329 EBro01_SQ005_C16_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_C16 5', mRNA sequence
Length = 610
Score = 375 bits (189), Expect = e-102
Identities = 295/325 (90%), Gaps = 4/325 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 289 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 347
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| | || ||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 348 ctcaggccatacgtggtgaagccctgactgtccagaagccaggaacacagactaggagct 407
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 408 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 466
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 467 ggacccattaacattgggaacccaggtgaattcaccatgctggaacttgctgagaacgtg 526
Query: 241 aa-ggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgaccc 299
|| |||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 527 aagggagttgatcaacccagaggtgacagtgacgatgactgag-acactcctgatgaccc 585
Query: 300 ccgccagaggaagccggacatcaca 324
|||||||||||||| |||||||||
Sbjct: 586 tcgccagaggaagcctgacatcaca 610
>gb|AL509971.1|AL509971 AL509971 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03H14u 3',
mRNA sequence
Length = 626
Score = 373 bits (188), Expect = e-102
Identities = 324/363 (89%), Gaps = 6/363 (1%)
Strand = Plus / Minus
Query: 79 agcccctgactg-tccag--aggccaggaaca-cagactaggagttttctgctatgttgc 134
|||||||||||| ||||| || ||||||||| ||||||||||| |||||||| |||||
Sbjct: 607 agcccctgactgttccaggaagcccaggaacaccagactaggag-cttctgctacgttgc 549
Query: 135 cgatatggttgatggtcttattaagc-tgatgaatggaaacaagactggaccgattaact 193
|||||||| |||||||||| |||| ||||||||||| |||| |||||||| ||||||
Sbjct: 548 tgatatggtcaatggtcttatgaagcttgatgaatggagacaacactggacccattaaca 489
Query: 194 tggggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatca 253
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 488 ttgggaacccaggtgaattcaccatgctggaacttgctgagaacgtgaaggagttgatca 429
Query: 254 acccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagc 313
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 428 acccagaggtgacagtgacgatgactgagaacactcctgatgaccctcgccagaggaagc 369
Query: 314 cggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacg 373
| |||||||||||||| ||||| ||||| | |||||||||||| ||||||| || ||||
Sbjct: 368 ctgacatcacaaaggcaaaggaggttcttgactgggagcccaaggtcgtcctacgtgacg 309
Query: 374 gcttggtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaaaaccaagg 433
||||||||||||||||||| || ||||||||||| || | ||||||||||| ||||||
Sbjct: 308 gcttggtgctcatggaggacgacttccgggagcgtttggcagtgcccaagaaggccaagg 249
Query: 434 cct 436
|||
Sbjct: 248 cct 246
Score = 77.8 bits (39), Expect = 5e-013
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 516 tttcattacggaatttgagttccaataaacttaatattcctttgtcgttcaccttgaagg 575
|||| ||||||||||||||||||||||||| | || ||||||||||||| |||||| |
Sbjct: 158 tttcgttacggaatttgagttccaataaaccaattacacctttgtcgttca-cttgaaag 100
Query: 576 attgtattattagaa 590
|||||||||||||||
Sbjct: 99 attgtattattagaa 85
>gb|BF260651.2|BF260651 HVSMEf0022J07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J07f, mRNA sequence
Length = 803
Score = 373 bits (188), Expect = e-102
Identities = 354/407 (86%), Gaps = 2/407 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 377 caacacctatggacctaggatgaacattgatgatggccgtgttgttagtaacttcat-tg 435
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
|||| || | || ||||| ||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 436 ctcatgccatacgtggtgaagccctgactgtccagaagccaggaacacagactangagct 495
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||
Sbjct: 496 t-ctgctacgttgctgatatggtcaatggtcttatgaagctgatgaatggagacaacact 554
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| |||||| | |||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 555 ggacccattaacattgggaacccaggtgaatctaccatgctggaacttgctgaaaacgtg 614
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 615 aaagagttgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccct 674
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|||||||||||||| ||||| |||||||| || || ||||| | ||||| ||||| ||
Sbjct: 675 cgccagaggaagcctgacataacaaaggcaaaagaggttcttgactgggaccccaaagtc 734
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcg 407
|| || | ||||||||| |||||||| |||| | |||||||||||
Sbjct: 735 gttctacatgacggcttgttgctcatgaaggacaacttccgggagcg 781
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,190
Number of Sequences: 312970
Number of extensions: 60190
Number of successful extensions: 16191
Number of sequences better than 0.5: 188
Number of HSP's better than 0.5 without gapping: 187
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15409
Number of HSP's gapped (non-prelim): 479
length of query: 725
length of database: 175,134,539
effective HSP length: 19
effective length of query: 706
effective length of database: 169,188,109
effective search space: 119446804954
effective search space used: 119446804954
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)