BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA000034.1|CA000034 HS16I09u HS Hordeum vulgare subsp. v... 153 1e-035
gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. v... 62 3e-008
gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. v... 62 3e-008
gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedl... 60 1e-007
gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA li... 58 5e-007
gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA li... 58 5e-007
gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day ger... 56 2e-006
gb|BQ662175.1|BQ662175 HR01O04u HR Hordeum vulgare subsp. v... 56 2e-006
gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedl... 48 4e-004
gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA li... 46 0.002
gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedl... 46 0.002
gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedl... 46 0.002
gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedl... 46 0.002
gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA li... 46 0.002
gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA li... 46 0.002
gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. v... 46 0.002
gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. v... 46 0.002
gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. v... 46 0.002
emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragme... 46 0.002
gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare s... 44 0.007
gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. v... 44 0.007
gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. v... 44 0.007
gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. v... 44 0.007
gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. v... 44 0.007
gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. v... 44 0.007
gb|AV833019.1|AV833019 AV833019 K. Sato unpublished cDNA li... 40 0.11
gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedl... 40 0.11
gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedl... 40 0.11
gb|BI956895.1|BI956895 HVSMEn0005O14f Hordeum vulgare rachi... 40 0.11
gb|AV930011.1|AV930011 AV930011 K. Sato unpublished cDNA li... 40 0.11
gb|BI778650.2|BI778650 EBro07_SQ003_O16_R root, 3 week, red... 40 0.11
gb|BM370514.2|BM370514 EBro08_SQ004_H07_R root, 3 week, dro... 40 0.11
gb|BQ765815.1|BQ765815 EBro03_SQ008_B11_R root, 3 week, wat... 40 0.11
gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, dro... 40 0.11
gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. v... 40 0.11
gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. v... 40 0.11
gb|AV836920.1|AV836920 AV836920 K. Sato unpublished cDNA li... 38 0.43
gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedl... 38 0.43
gb|BF261655.2|BF261655 HV_CEa0001N17f Hordeum vulgare seedl... 38 0.43
gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedl... 38 0.43
gb|BI779573.2|BI779573 EBro01_SQ004_H10_R root, 3 week, hyd... 38 0.43
gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. v... 38 0.43
gb|BU996721.1|BU996721 HM14I14r HM Hordeum vulgare subsp. v... 38 0.43
gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. v... 38 0.43
gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. v... 38 0.43
gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. v... 38 0.43
>gb|CA000034.1|CA000034 HS16I09u HS Hordeum vulgare subsp. vulgare cDNA clone HS16I09
3-PRIME, mRNA sequence
Length = 402
Score = 153 bits (77), Expect = 1e-035
Identities = 212/257 (82%)
Strand = Plus / Minus
Query: 193 tgcccgtggtggccttcccgcagtggggcgaccagtgcacggacgccaagttcctggtgg 252
|||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 399 tgccggtggtggcgttcccgcagtggggcgaccagtgcacggacgccaagtacctcgtgg 340
Query: 253 acgagctcgggatgggtgtccgcctccgcgggccgctgcggcgggacgccgtgcgggagg 312
| ||| || |||||| || ||| || ||| ||||||| | || |||||||||| || |
Sbjct: 339 aggagttcaagatgggcgtgcgcatcggcgcgccgctgggacgtaacgccgtgcgcgacg 280
Query: 313 cggtggacgccgcagtggcggggcccgaggccgacgcgatgctcgccagcgccaggaggt 372
| ||||| | ||| ||||| ||||| || ||| ||||||||||| | ||||||| ||
Sbjct: 279 ccgtggaggacgccgtggccgggccggacgccagcgcgatgctcgagaacgccagggcgt 220
Query: 373 ggagcgcggcggcgcgggaggccgtggcgcccggcgggtcctcggacgcgcacgtccagg 432
|||||||| ||||| || ||||| |||||||||||||| |||||| ||||| ||||
Sbjct: 219 ggagcgcgccggcgaggacagccgtagcgcccggcgggtcgtcggaccgccacgtgcagg 160
Query: 433 cgttcgtggacgaggtg 449
||||||| |||||||||
Sbjct: 159 cgttcgtagacgaggtg 143
>gb|BQ466592.1|BQ466592 HT02P16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02P16
5-PRIME, mRNA sequence
Length = 606
Score = 61.9 bits (31), Expect = 3e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 121 cgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctgga 175
||||||| |||| |||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 509 cgcacccctccatcgcctgcttcgtgtcgcactgcgggtggaactccaccatgga 563
>gb|CA013515.1|CA013515 HT08L06r HT Hordeum vulgare subsp. vulgare cDNA clone HT08L06
5-PRIME, mRNA sequence
Length = 634
Score = 61.9 bits (31), Expect = 3e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 121 cgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccaccctgga 175
||||||| |||| |||||||||| | ||||||||||||||||||||||| ||||
Sbjct: 296 cgcacccctccatcgcctgcttcgtgtcgcactgcgggtggaactccaccatgga 350
>gb|BF267582.3|BF267582 HV_CEa0018F10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018F10f, mRNA sequence
Length = 602
Score = 60.0 bits (30), Expect = 1e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 139 gcttcctcacgcactgcgggtggaactccaccctggag 176
||||||| ||||||||||||||||||||||| ||||||
Sbjct: 23 gcttcctgacgcactgcgggtggaactccacgctggag 60
>gb|AV927784.1|AV927784 AV927784 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3k12 3', mRNA sequence
Length = 651
Score = 58.0 bits (29), Expect = 5e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
|||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||
Sbjct: 327 cgcgtgctctcgcacccctccgtcgcctgcttcgtgtcgcactgcgggtggaactccacc 268
Query: 171 ctgga 175
||||
Sbjct: 267 atgga 263
>gb|AV929760.1|AV929760 AV929760 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16h10 3', mRNA sequence
Length = 669
Score = 58.0 bits (29), Expect = 5e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 111 cgcgtgctggcgcacccgtccaccgcctgcttcctcacgcactgcgggtggaactccacc 170
|||||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||
Sbjct: 340 cgcgtgctctcgcacccctccgtcgcctgcttcgtgtcgcactgcgggtggaactccacc 281
Query: 171 ctgga 175
||||
Sbjct: 280 atgga 276
>gb|BM444331.1|BM444331 EBem09_SQ004_N12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_N12 5', mRNA sequence
Length = 340
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ctgcttcctcacgcactgcgggtggaactccaccctggag 176
||||||| | ||||||||||||||||||||||| ||||||
Sbjct: 125 ctgcttcgtgacgcactgcgggtggaactccacgctggag 164
>gb|BQ662175.1|BQ662175 HR01O04u HR Hordeum vulgare subsp. vulgare cDNA clone HR01O04
3-PRIME, mRNA sequence
Length = 532
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 145 tcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
|||| |||||||||||||||||||| |||||| |||| ||| |||||||||
Sbjct: 464 tcacccactgcgggtggaactccacgctggaggccatggcgctgggcgtgcc 413
>gb|BF262509.1|BF262509 HV_CEa0004C17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004C17f, mRNA sequence
Length = 873
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 139 gcttcctcacgcactgcgggtggaactc 166
||||||| ||||||||||||||||||||
Sbjct: 54 gcttcctgacgcactgcgggtggaactc 81
>gb|AV833284.1|AV833284 AV833284 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5b03, mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactc 166
|||||||||||||| ||||||||||||
Sbjct: 372 cttcctcacgcactccgggtggaactc 398
>gb|BF628779.2|BF628779 HVSMEb0008B22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008B22f, mRNA sequence
Length = 741
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| ||||||||||||
Sbjct: 458 cttcctcacacactgcggctggaactccacc 488
>gb|BF628789.2|BF628789 HVSMEb0008D18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008D18f, mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactccacc 170
||||||||| |||||||| ||||||||||||
Sbjct: 458 cttcctcacacactgcggctggaactccacc 488
>gb|BF255286.3|BF255286 HVSMEf0006H07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006H07f, mRNA sequence
Length = 505
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggag 176
|||||| |||| |||||||| ||||||||||| ||||||
Sbjct: 98 tgcttcgtcacccactgcggctggaactccacgctggag 136
>gb|BJ463253.1|BJ463253 BJ463253 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 5', mRNA sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactc 166
|||||||||||||| ||||||||||||
Sbjct: 335 cttcctcacgcactccgggtggaactc 361
>gb|BJ467287.1|BJ467287 BJ467287 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26i01 3', mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 140 cttcctcacgcactgcgggtggaactc 166
|||||||||||||| ||||||||||||
Sbjct: 431 cttcctcacgcactccgggtggaactc 405
>gb|BQ464840.1|BQ464840 HU01M16T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
5-PRIME, mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggag 176
|||||| |||| |||||||| ||||||||||| ||||||
Sbjct: 178 tgcttcgtcacccactgcggctggaactccacgctggag 216
>gb|BQ663266.1|BQ663266 HU01M16w HU Hordeum vulgare subsp. vulgare cDNA clone HU01M16
3-PRIME, mRNA sequence
Length = 570
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggag 176
|||||| |||| |||||||| ||||||||||| ||||||
Sbjct: 393 tgcttcgtcacccactgcggctggaactccacgctggag 355
>gb|CA015437.1|CA015437 HT14F01r HT Hordeum vulgare subsp. vulgare cDNA clone HT14F01
5-PRIME, mRNA sequence
Length = 510
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggag 176
|||||| |||| |||||||| ||||||||||| ||||||
Sbjct: 217 tgcttcgtcacccactgcggctggaactccacgctggag 255
>gb|CA023704.1|CA023704 HZ47C08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47C08
5-PRIME, mRNA sequence
Length = 355
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactccaccctggaga 177
|||||| ||||||||||||| ||||||||||
Sbjct: 152 acgcacggcgggtggaactcgaccctggaga 182
>emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragment; clone MWG0527
Length = 580
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 138 tgcttcctcacgcactgcgggtggaactccaccctggag 176
|||||||| |||||| ||||||||||||| || ||||||
Sbjct: 40 tgcttcctgacgcacggcgggtggaactcgacgctggag 78
>gb|BM816841.1|BM816841 HB105A11_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB105A11_SK.ab1 similar to
Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase, mRNA sequence
Length = 872
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactcca 168
||||||||||||||||||||||
Sbjct: 528 acgcactgcgggtggaactcca 549
>gb|BQ660136.1|BQ660136 HI01C06w HI Hordeum vulgare subsp. vulgare cDNA clone HI01C06
3-PRIME, mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 141 ttcctcacgcactgcgggtggaactc 166
||||||||||||||||| ||||||||
Sbjct: 567 ttcctcacgcactgcggctggaactc 542
>gb|CA010560.1|CA010560 HT09K12u HT Hordeum vulgare subsp. vulgare cDNA clone HT09K12
3-PRIME, mRNA sequence
Length = 361
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactcca 168
||||||||||||||||||||||
Sbjct: 328 acgcactgcgggtggaactcca 307
>gb|CA016572.1|CA016572 HV06P19u HV Hordeum vulgare subsp. vulgare cDNA clone HV06P19
3-PRIME, mRNA sequence
Length = 447
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactcca 168
||||||||||||||||||||||
Sbjct: 351 acgcactgcgggtggaactcca 330
>gb|CA016687.1|CA016687 HV06O20u HV Hordeum vulgare subsp. vulgare cDNA clone HV06O20
3-PRIME, mRNA sequence
Length = 490
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactcca 168
||||||||||||||||||||||
Sbjct: 351 acgcactgcgggtggaactcca 330
>gb|CA016852.1|CA016852 HV06B13u HV Hordeum vulgare subsp. vulgare cDNA clone HV06B13
3-PRIME, mRNA sequence
Length = 365
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactcca 168
||||||||||||||||||||||
Sbjct: 334 acgcactgcgggtggaactcca 313
>gb|AV833019.1|AV833019 AV833019 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare top three leaves adult, heading stage Hordeum
vulgare subsp. vulgare cDNA clone baal9e05, mRNA
sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 234 gacgccaagttcctggtgga 253
||||||||||||||||||||
Sbjct: 454 gacgccaagttcctggtgga 435
>gb|BG300446.1|BG300446 HVSMEb0017B13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017B13f, mRNA sequence
Length = 875
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactc 166
||||||||||||||||||||
Sbjct: 303 acgcactgcgggtggaactc 322
>gb|BF253477.2|BF253477 HVSMEf0001A18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001A18f, mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 139 gcttcctcacgcactgcgggtggaactccaccctggagaccatc 182
||||||| ||||||||||| |||||| | || |||||| |||||
Sbjct: 298 gcttcctgacgcactgcggctggaacgcgacgctggaggccatc 341
>gb|BI956895.1|BI956895 HVSMEn0005O14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005O14f, mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 693 cgtctcgccggccgcgtggc 712
||||||||||||||||||||
Sbjct: 831 cgtctcgccggccgcgtggc 812
>gb|AV930011.1|AV930011 AV930011 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd17h14 3', mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 150 cactgcgggtggaactccac 169
||||||||||||||||||||
Sbjct: 429 cactgcgggtggaactccac 410
>gb|BI778650.2|BI778650 EBro07_SQ003_O16_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_O16 5', mRNA sequence
Length = 404
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 331 cggggcccgaggccgacgcg 350
||||||||||||||||||||
Sbjct: 281 cggggcccgaggccgacgcg 262
>gb|BM370514.2|BM370514 EBro08_SQ004_H07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_H07 5', mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 234 gacgccaagttcctggtgga 253
||||||||||||||||||||
Sbjct: 490 gacgccaagttcctggtgga 509
>gb|BQ765815.1|BQ765815 EBro03_SQ008_B11_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_B11 5', mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 331 cggggcccgaggccgacgcg 350
||||||||||||||||||||
Sbjct: 291 cggggcccgaggccgacgcg 272
>gb|BQ768447.1|BQ768447 EBro08_SQ011_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_B19 5', mRNA sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.11
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 137 ctgcttcctcacgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcc 196
||||||||| || ||| |||||||||||| || |||||| |||||| | |||||||||
Sbjct: 167 ctgcttcctgacccacgccgggtggaactcgacgctggagggcatcgccgagggcgtgcc 226
>gb|CA009114.1|CA009114 HU13D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU13D11
5-PRIME, mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgcccgtggt 202
||||||||||||||| ||| || ||||||| | |||| || ||||||||| ||||
Sbjct: 338 acgcactgcgggtggggctcgactctggagagcgtcgccgccggcgtgcccatggt 393
>gb|CB879235.1|CB879235 HP11G23T HP Hordeum vulgare subsp. vulgare cDNA clone HP11G23
5-PRIME, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 139 gcttcctcacgcactgcgggtggaactccaccctggagaccatc 182
||||||| ||||||||||| |||||| | || |||||| |||||
Sbjct: 46 gcttcctgacgcactgcggctggaacgcgacgctggaggccatc 89
>gb|AV836920.1|AV836920 AV836920 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd11m11, mRNA
sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 554 gtgttggttggtattgtta 572
|||||||||||||||||||
Sbjct: 543 gtgttggttggtattgtta 525
>gb|BF622731.2|BF622731 HVSMEa0008E02f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0008E02f, mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactc 166
||||||||||||| |||| ||||||||
Sbjct: 520 cttcctcacgcacagcggttggaactc 546
>gb|BF261655.2|BF261655 HV_CEa0001N17f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0001N17f, mRNA sequence
Length = 602
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 250 tggacgagctcgggatggg 268
|||||||||||||||||||
Sbjct: 355 tggacgagctcgggatggg 373
>gb|BF065670.2|BF065670 HV_CEb0013E24f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0013E24f, mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactc 166
||||||||||||| |||| ||||||||
Sbjct: 59 cttcctcacgcacagcggttggaactc 85
>gb|BI779573.2|BI779573 EBro01_SQ004_H10_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H10 5', mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 367 ggaggtggagcgcggcggcgcgg 389
||||||||||||| |||||||||
Sbjct: 186 ggaggtggagcgcagcggcgcgg 164
>gb|BU994136.1|BU994136 HM05N21r HM Hordeum vulgare subsp. vulgare cDNA clone HM05N21
5-PRIME, mRNA sequence
Length = 554
Score = 38.2 bits (19), Expect = 0.43
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 147 acgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
||||||||||| ||| |||||| ||||||| | |||| || |||||||||
Sbjct: 134 acgcactgcggatggggctccacgctggagagcgtcgccgcaggcgtgccc 184
>gb|BU996721.1|BU996721 HM14I14r HM Hordeum vulgare subsp. vulgare cDNA clone HM14I14
5-PRIME, mRNA sequence
Length = 508
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 366 aggaggtggagcgcggcgg 384
|||||||||||||||||||
Sbjct: 52 aggaggtggagcgcggcgg 34
>gb|CA016523.1|CA016523 HV08I24u HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
3-PRIME, mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 140 cttcctcacgcactgcgggtggaactc 166
||||||||||||| |||| ||||||||
Sbjct: 476 cttcctcacgcacagcggttggaactc 450
>gb|CA018416.1|CA018416 HV08I24r HV Hordeum vulgare subsp. vulgare cDNA clone HV08I24
5-PRIME, mRNA sequence
Length = 647
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 140 cttcctcacgcactgcgggtggaactc 166
||||||||||||| |||| ||||||||
Sbjct: 170 cttcctcacgcacagcggttggaactc 196
>gb|CB880799.1|CB880799 HM07N21w HM Hordeum vulgare subsp. vulgare cDNA clone HM07N21
3-PRIME, mRNA sequence
Length = 550
Score = 38.2 bits (19), Expect = 0.43
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 147 acgcactgcgggtggaactccaccctggagaccatcgcggcgggcgtgccc 197
||||||||||| ||| |||||| ||||||| | |||| || |||||||||
Sbjct: 421 acgcactgcggatggggctccacgctggagagcgtcgccgcaggcgtgccc 371
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,409
Number of Sequences: 312970
Number of extensions: 122409
Number of successful extensions: 40635
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40562
Number of HSP's gapped (non-prelim): 73
length of query: 804
length of database: 175,134,539
effective HSP length: 19
effective length of query: 785
effective length of database: 169,188,109
effective search space: 132812665565
effective search space used: 132812665565
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)