BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.5
(1999 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 ... 103 2e-020
gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. v... 82 8e-014
gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedl... 76 5e-012
gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedl... 74 2e-011
gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green... 68 1e-009
gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Libr... 66 5e-009
gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-a... 64 2e-008
gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedl... 60 3e-007
gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA li... 60 3e-007
gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA li... 60 3e-007
gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots... 56 5e-006
gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. v... 56 5e-006
gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. v... 54 2e-005
gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA li... 52 7e-005
gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA li... 52 7e-005
gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. v... 52 7e-005
gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA li... 52 7e-005
gb|BG299744.1|BG299744 HVSMEa0021K06f Hordeum vulgare seedl... 50 3e-004
gb|BI952581.1|BI952581 HVSMEm0007A18f Hordeum vulgare green... 50 3e-004
gb|AU252319.1|AU252319 AU252319 salt-stressed barley root c... 50 3e-004
gb|BE602159.2|BE602159 HVSMEh0102M13f Hordeum vulgare 5-45 ... 48 0.001
gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedl... 48 0.001
gb|BF628612.2|BF628612 HVSMEb0006L23f Hordeum vulgare seedl... 46 0.004
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 46 0.004
gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedl... 46 0.004
gb|BF065171.2|BF065171 HV_CEb0023M08f Hordeum vulgare seedl... 46 0.004
gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA li... 46 0.004
gb|BM445092.2|BM445092 EBem09_SQ007_G13_R embryo, 1 Day ger... 46 0.004
gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DA... 44 0.018
gb|BI952693.1|BI952693 HVSMEm0007G18f Hordeum vulgare green... 44 0.018
gb|BE214490.1|BE214490 HV_CEb0003J19f Hordeum vulgare seedl... 44 0.018
gb|BF262413.2|BF262413 HV_CEa0004D05f Hordeum vulgare seedl... 44 0.018
gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-a... 44 0.018
gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA li... 44 0.018
gb|BJ471507.1|BJ471507 BJ471507 K. Sato unpublished cDNA li... 44 0.018
gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. v... 44 0.018
emb|AJ495774.1|HVU495774 Hordeum vulgare partial mRNA for p... 44 0.018
gb|AY989887.1| Hordeum vulgare subsp. vulgare cytochrome P4... 44 0.018
gb|BF253916.1|BF253916 HVSMEf0002H19f Hordeum vulgare seedl... 42 0.070
gb|BG365432.1|BG365432 HVSMEi0002K17f Hordeum vulgare 20 DA... 42 0.070
gb|BI958974.1|BI958974 HVSMEn0017I07f Hordeum vulgare rachi... 42 0.070
gb|AV925094.1|AV925094 AV925094 K. Sato unpublished cDNA li... 42 0.070
gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. v... 42 0.070
gb|AU252310.1|AU252310 AU252310 salt-stressed barley root c... 42 0.070
gb|BF622306.2|BF622306 HVSMEa0002K13f Hordeum vulgare seedl... 40 0.28
gb|BF628736.2|BF628736 HVSMEb0007K07f Hordeum vulgare seedl... 40 0.28
gb|BF256188.2|BF256188 HVSMEf0009A20f Hordeum vulgare seedl... 40 0.28
gb|BF259330.2|BF259330 HVSMEf0019E22f Hordeum vulgare seedl... 40 0.28
gb|BG300700.2|BG300700 HVSMEb0018A18f Hordeum vulgare seedl... 40 0.28
gb|BE602735.3|BE602735 HVSMEh0101G15f Hordeum vulgare 5-45 ... 40 0.28
gb|BG418349.2|BG418349 HVSMEk0022G14f Hordeum vulgare testa... 40 0.28
gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA li... 40 0.28
gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA li... 40 0.28
gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA li... 40 0.28
gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA li... 40 0.28
gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA li... 40 0.28
gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA li... 40 0.28
gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA li... 40 0.28
gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA li... 40 0.28
gb|BM816704.1|BM816704 HB01G04_T3.ab1 HB Hordeum vulgare su... 40 0.28
gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA li... 40 0.28
gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA li... 40 0.28
gb|BQ458817.1|BQ458817 HA04C08r HA Hordeum vulgare subsp. v... 40 0.28
gb|BQ469871.1|BQ469871 HX01B20T HX Hordeum vulgare subsp. v... 40 0.28
gb|BM368998.2|BM368998 EBem07_SQ002_D23_R embryo, 28 DPA, n... 40 0.28
gb|BI779546.2|BI779546 EBro01_SQ004_G04_R root, 3 week, hyd... 40 0.28
gb|BQ760705.1|BQ760705 EBro03_SQ003_D23_R root, 3 week, wat... 40 0.28
gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. v... 40 0.28
gb|CA032860.1|CA032860 HX14G14r HX Hordeum vulgare subsp. v... 40 0.28
>gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091B12f, mRNA sequence
Length = 904
Score = 103 bits (52), Expect = 2e-020
Identities = 190/236 (80%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| ||| |||||||||| ||| |||||||||||||||| ||| ||||| ||||
Sbjct: 452 gcggaaagaccgcaccttctttacgctcagcatgtgcgtggtgacgagcttcctcgcctg 393
Query: 1417 ccgccagtactcgccgtagggcacgaacgcgacgtccgagggcccgtagcggatgatctc 1476
|||||||||||||||||| ||| |||| ||| |||||||| ||||| |||||| ||
Sbjct: 392 ccgccagtactcgccgtacggcgcgaagccgatgtccgaggagccgtacatgatgatgtc 333
Query: 1477 ggcggccatggacggcggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtc 1536
|| | | | || | ||||||||||| |||| |||||| || |||||||| || || ||
Sbjct: 332 ggtgacaagagagcgtggccgcgacgccaagacgtggtcatgcgtgcgcagcaccgcctc 273
Query: 1537 ggcggcgctgggcgaggacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||||| ||||| ||||||| || || ||||||||||| | |||||||||||
Sbjct: 272 agcggcgcgcggcgatgacacgacgagtgtcggcacggcgcccaggcggaggagca 217
Score = 42.1 bits (21), Expect = 0.070
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1652 ccgatgaggtggaggtggccgatgatgggcagc 1684
|||| |||||| ||||| |||||||||||||||
Sbjct: 160 ccgacgaggtgcaggtgcccgatgatgggcagc 128
>gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. vulgare cDNA clone HV08M10
5-PRIME, mRNA sequence
Length = 550
Score = 81.8 bits (41), Expect = 8e-014
Identities = 197/249 (79%)
Strand = Plus / Minus
Query: 1353 catggcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgc 1412
|||||||| |||| | ||||||||| || |||| | |||||||||| || |||||
Sbjct: 544 catggcggtaggagcggaccttcttgttggtgagaaggtgcgtggtggcgatcttcctaa 485
Query: 1413 cctgccgccagtactcgccgtagggcacgaacgcgacgtccgagggcccgtagcggatga 1472
|||||||||||| |||||||||||| ||| |||||||||||||| |||||| || ||
Sbjct: 484 cctgccgccagtgctcgccgtaggggctgaaggcgacgtccgaggggccgtagaagagga 425
Query: 1473 tctcggcggccatggacggcggccgcgacgcgaagatgtggtcctgggtgcgcaggacgg 1532
| ||| | | | ||| ||||| |||||||||| |||||| || |||||||| ||||
Sbjct: 424 tttcgctgacgagggagtagggccgggacgcgaagacgtggtcgtgcgtgcgcagcacgg 365
Query: 1533 cgtcggcggcgctgggcgaggacacgaacagggtgggcacggcgccgatgcggaggagca 1592
| | |||||||| ||||| ||||||| || || || |||||||||| ||||||||||
Sbjct: 364 cctgcgcggcgctcggcgacgacacgacgagcgtcgggacggcgccgagtcggaggagca 305
Query: 1593 gcaggccgt 1601
|||||||
Sbjct: 304 tgaggccgt 296
>gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012E10f, mRNA sequence
Length = 620
Score = 75.8 bits (38), Expect = 5e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| |||||||| ||||| ||| |||||||||||||||| ||| ||||| ||||
Sbjct: 543 gcggaaagactgcactttcttaacgctcagcatgtgcgtggtgacgagcttcctcgcctg 484
Query: 1417 ccgccagtactcgccgta 1434
||||||||||||||||||
Sbjct: 483 ccgccagtactcgccgta 466
Score = 56.0 bits (28), Expect = 5e-006
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| ||||| | || |||||| || |||||||| || || || ||||||| |||||
Sbjct: 407 ggccgagacgccaggacgtggtcatgcgtgcgcagcaccgcctcagcggcgcgtggcgat 348
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 347 gacacgacgagggtcggcacggcgcccaggcggaggagca 308
Score = 46.1 bits (23), Expect = 0.004
Identities = 49/57 (85%), Gaps = 3/57 (5%)
Strand = Plus / Minus
Query: 1651 gccgatgaggtggaggtggccgatgatgggcagcttgcccgggggcgaaggcgggag 1707
||||| |||||| ||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 252 gccgacgaggtgtaggtgcccgatgatgggcagc---gccggcggcgaaggcgggag 199
>gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002E08f, mRNA sequence
Length = 850
Score = 73.8 bits (37), Expect = 2e-011
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 1356 ggcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccct 1415
|||||| ||| ||||||||| ||| |||||||| ||||||||||| || |||| |||
Sbjct: 220 ggcggagggagtgcaccttcctggcgctgagcaggtgcgtggtgaccagcctcctcgcct 161
Query: 1416 gccgccagtactcgccgtagggcacgaacgcga 1448
|||||||| ||||||||||||| ||||| ||||
Sbjct: 160 gccgccagaactcgccgtaggggacgaaggcga 128
Score = 65.9 bits (33), Expect = 5e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1492 cggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgc 1544
||||||||| ||||||| ||||||||| ||||||||||| || ||||||||||
Sbjct: 84 cggccgcgaggcgaagacgtggtcctgcgtgcgcaggaccgcctcggcggcgc 32
>gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0004P09f, mRNA sequence
Length = 829
Score = 67.9 bits (34), Expect = 1e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 1355 tggcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccc 1414
|||||||| || | ||||||| ||| |||||||||||||||||||| | |||||| ||
Sbjct: 149 tggcggaacgagttcaccttcctggcgctgagcatgtgcgtggtgaccaccttcctggcc 90
Query: 1415 tgccgccagtactcgccgtagggcacgaacgcgacgtc 1452
|| | |||| |||||| |||||| |||||||||||||
Sbjct: 89 tgtctccagggctcgccatagggcgcgaacgcgacgtc 52
Score = 50.1 bits (25), Expect = 3e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 1223 agcaccgcgcggcacaccacgtcgttggtgtacccggacaggagatcgctcaggtccacc 1282
|||||||| ||||||||||||||||| | |||| | |||||| ||||||| |||||||
Sbjct: 275 agcaccgcccggcacaccacgtcgttcgcgtacgagcccaggagctcgctcatgtccacc 216
Query: 1283 g 1283
|
Sbjct: 215 g 215
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1121 gggaagtagtcctcgaggttgaacccgccgaggagggacacgttgatctctgtcagctcg 1180
|||||||||||||||| ||||||||| || || || |||| |||||| || |||||| |
Sbjct: 377 gggaagtagtcctcgacgttgaaccctcccagcagcgacatgttgatgtcgatcagctgg 318
Query: 1181 ctgaacagcctgttcc 1196
| || |||| ||||||
Sbjct: 317 cggagcagcttgttcc 302
>gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM004.F10, mRNA sequence
Length = 1299
Score = 65.9 bits (33), Expect = 5e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 1353 catggcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgc 1412
|||||||| |||| | ||||||||| || |||| | |||||||||| || |||||
Sbjct: 317 catggcggtaggagcggaccttcttgttggtgagaaggtgcgtggtggcgatcttcctaa 258
Query: 1413 cctgccgccagtactcgccgtagggcacgaacgcgacgtccgagggcccgtag 1465
|||||||||||| |||||||||||| ||| |||||||||||||| ||||||
Sbjct: 257 cctgccgccagtgctcgccgtaggggctgaaggcgacgtccgaggggccgtag 205
>gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N10f, mRNA sequence
Length = 633
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| |||||||||||||| ||| |||||||||||||||| ||| ||||| ||||
Sbjct: 474 gcggaaagactgcaccttcttaacgctcagcatgtgcgtggtgacgagcttcctcgcctg 415
Query: 1417 ccgccagt 1424
||||||||
Sbjct: 414 ccgccagt 407
Score = 52.0 bits (26), Expect = 7e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1651 gccgatgaggtggaggtggccgatgatgggcagc 1684
||||| |||||| |||||||||||||||||||||
Sbjct: 183 gccgacgaggtgcaggtggccgatgatgggcagc 150
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||||||||| | || |||||| || |||||||| || || || || || | |||||
Sbjct: 338 ggccgcgacgccaggacgtggtcatgcgtgcgcagcaccgcctcagccgcacgtggcgat 279
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||||| ||||| |||||||| || | |||||||||||
Sbjct: 278 gacacgacgagggtcggcacggcacccaggcggaggagca 239
>gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0012I19f, mRNA sequence
Length = 515
Score = 60.0 bits (30), Expect = 3e-007
Identities = 147/186 (79%)
Strand = Plus / Minus
Query: 1499 gacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgaggacacg 1558
||||| |||| |||||| || |||||||| ||||| | |||||||| || || |||||
Sbjct: 383 gacgcaaagacgtggtcgtgcgtgcgcagcacggcatgcgcggcgctcggtgacgacact 324
Query: 1559 aacagggtgggcacggcgccgatgcggaggagcagcaggccgttgcgcccgtgcttggcg 1618
| || || || |||||||||| ||||||||||| || |||| ||| ||||||||||||
Sbjct: 323 acgagcgtcgggacggcgccgaggcggaggagcatgagcccgtcgcggccgtgcttggcg 264
Query: 1619 tccaggtcccggatcgagatgtgggtctcggcgccgatgaggtggaggtggccgatgatg 1678
| ||||| |||| || ||||| | || ||||| |||||| |||||||| |||||
Sbjct: 263 gcgaggtcgcggagggatatgtgcgggagggagccgacgaggtgcaggtggcctatgatc 204
Query: 1679 ggcagc 1684
||||||
Sbjct: 203 ggcagc 198
Score = 40.1 bits (20), Expect = 0.28
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 1413 cctgccgccagtactcgccgtagggcacgaacgcgacgtccgagggcccgta 1464
|||||||||||| ||||||| |||| ||| ||||| |||||||| |||||
Sbjct: 469 cctgccgccagtgctcgccgaaggggcagaaggcgacatccgaggggccgta 418
>gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd20a20 5', mRNA sequence
Length = 357
Score = 60.0 bits (30), Expect = 3e-007
Identities = 50/56 (89%), Gaps = 3/56 (5%)
Strand = Plus / Minus
Query: 1652 ccgatgaggtggaggtggccgatgatgggcagcttgcccgggggcgaaggcgggag 1707
||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 180 ccgatgaggtggaggtgcccgatgatgggcagc---gccggcggcgaaggcgggag 128
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| || ||||||| |||||| || |||||||| ||||| || |||||| | |||
Sbjct: 336 ggccgtgaagcgaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggag 277
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||| | ||| ||||||||||||| | ||||||||||
Sbjct: 276 gacacaacgaggttgggcacggcgcccagacggaggagca 237
>gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22h15 5', mRNA sequence
Length = 614
Score = 60.0 bits (30), Expect = 3e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| ||||||||||||||| ||| |||||||| ||||||| ||| ||| | | ||
Sbjct: 504 gcggaacgactgcaccttcttgacgctcagcatgtgggtggtgacgagcttctttgcttg 445
Query: 1417 ccgccagtactcgccgta 1434
|||||||||||| |||||
Sbjct: 444 ccgccagtactcaccgta 427
Score = 60.0 bits (30), Expect = 3e-007
Identities = 50/56 (89%), Gaps = 3/56 (5%)
Strand = Plus / Minus
Query: 1652 ccgatgaggtggaggtggccgatgatgggcagcttgcccgggggcgaaggcgggag 1707
||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 212 ccgatgaggtggaggtgcccgatgatgggcagc---gccggcggcgaaggcgggag 160
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| || ||||||| |||||| || |||||||| ||||| || |||||| | |||
Sbjct: 368 ggccgtgaagcgaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggag 309
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||| | ||| ||||||||||||| | ||||||||||
Sbjct: 308 gacacaacgaggttgggcacggcgcccagacggaggagca 269
>gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05H19V 5', mRNA sequence
Length = 700
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 523 gaaccgctccggcatgaactcctccggc 550
||||||||||||||||||||||||||||
Sbjct: 151 gaaccgctccggcatgaactcctccggc 124
>gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
5-PRIME, mRNA sequence
Length = 630
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 655 gtgcgggaggaggaacggcgccggcgggtgcaggcgcagcgtctcctt 702
|||||||| ||||| ||||||||||||||| || || |||||||||||
Sbjct: 123 gtgcgggacgaggagcggcgccggcgggtgaagccggagcgtctcctt 76
>gb|BQ458589.1|BQ458589 HA04M20r HA Hordeum vulgare subsp. vulgare cDNA clone HA04M20
5-PRIME, mRNA sequence
Length = 630
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 529 ctccggcatgaactcctccggcttctcccac 559
||||||| |||||||||||||||||||||||
Sbjct: 157 ctccggcctgaactcctccggcttctcccac 127
>gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3e02 5', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 7e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| |||| |||||||||| ||| |||||||| ||||||| ||| ||| | | ||
Sbjct: 336 gcggaacgactacaccttcttgacgctcagcatgtgggtggtgacgagcttctttgcttg 277
Query: 1417 ccgccagtactcgccgta 1434
|||||||||||| |||||
Sbjct: 276 ccgccagtactcaccgta 259
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| || ||||||| |||||| || |||||||| ||||| || |||||| | |||
Sbjct: 200 ggccgtgaagcgaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggag 141
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||| | ||| ||||||||||||| | ||||||||||
Sbjct: 140 gacacaacgaggttgggcacggcgcccagacggaggagca 101
>gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11k15 5', mRNA sequence
Length = 598
Score = 52.0 bits (26), Expect = 7e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| |||| |||||||||| ||| |||||||| ||||||| ||| ||| | | ||
Sbjct: 336 gcggaacgactacaccttcttgacgctcagcatgtgggtggtgacgagcttctttgcttg 277
Query: 1417 ccgccagtactcgccgta 1434
|||||||||||| |||||
Sbjct: 276 ccgccagtactcaccgta 259
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| || ||||||| |||||| || |||||||| ||||| || |||||| | |||
Sbjct: 200 ggccgtgaagcgaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggag 141
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||| | ||| ||||||||||||| | ||||||||||
Sbjct: 140 gacacaacgaggttgggcacggcgcccagacggaggagca 101
>gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P05
5-PRIME, mRNA sequence
Length = 537
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 675 ccggcgggtgcaggcgcagcgtctccttga 704
|||||||||||| |||||||||||||||||
Sbjct: 64 ccggcgggtgcatgcgcagcgtctccttga 35
>gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40l11 5', mRNA sequence
Length = 317
Score = 52.0 bits (26), Expect = 7e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 1357 gcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccctg 1416
|||||| |||| |||||||||| ||| |||||||| ||||||| ||| ||| | | ||
Sbjct: 308 gcggaacgactacaccttcttgacgctcagcatgtgggtggtgacgagcttctttgcttg 249
Query: 1417 ccgccagtactcgccgta 1434
|||||||||||| |||||
Sbjct: 248 ccgccagtactcaccgta 231
Score = 40.1 bits (20), Expect = 0.28
Identities = 80/100 (80%)
Strand = Plus / Minus
Query: 1493 ggccgcgacgcgaagatgtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgag 1552
||||| || ||||||| |||||| || |||||||| ||||| || |||||| | |||
Sbjct: 172 ggccgtgaagcgaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggag 113
Query: 1553 gacacgaacagggtgggcacggcgccgatgcggaggagca 1592
||||| | ||| ||||||||||||| | ||||||||||
Sbjct: 112 gacacaacgaggttgggcacggcgcccagacggaggagca 73
>gb|BG299744.1|BG299744 HVSMEa0021K06f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0021K06f, mRNA sequence
Length = 785
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1651 gccgatgaggtggaggtggccgatgatgggcag 1683
|||||||||||| ||||| ||||||||||||||
Sbjct: 159 gccgatgaggtgaaggtgcccgatgatgggcag 127
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1413 cctgccgccagtactcgccgtagggcacgaacgcgacgtc 1452
||||||||||||||||||| || ||| |||| ||||||||
Sbjct: 394 cctgccgccagtactcgccatatggcgcgaaggcgacgtc 355
>gb|BI952581.1|BI952581 HVSMEm0007A18f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0007A18f, mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1652 ccgatgaggtggaggtggccgatgatgggcagc 1684
||||||||||||||||| ||||| |||||||||
Sbjct: 200 ccgatgaggtggaggtgcccgattatgggcagc 168
>gb|AU252319.1|AU252319 AU252319 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C11R similar to cytochrome P450,
mRNA sequence
Length = 428
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 523 gaaccgctccggcatgaactcctccggcttctcccac 559
||||||||| ||||||||||| |||||||| ||||||
Sbjct: 372 gaaccgctctggcatgaactcttccggcttttcccac 408
>gb|BE602159.2|BE602159 HVSMEh0102M13f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0102M13f, mRNA sequence
Length = 654
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1390 gtgcgtggtgaggagtttcctgccctgccgccagtactcgccgtaggg 1437
||||||||||| ||| ||||| |||||| ||||| ||||||||||||
Sbjct: 258 gtgcgtggtgacgagcttcctcgcctgcctccagtgctcgccgtaggg 211
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1229 gcgcggcacaccacgtcgttgg 1250
||||||||||||||||||||||
Sbjct: 413 gcgcggcacaccacgtcgttgg 392
>gb|BF066135.3|BF066135 HV_CEb0014P04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P04f, mRNA sequence
Length = 900
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1413 cctgccgccagtactcgccgtagggcacgaacgcgacgtc 1452
|||| ||||||||||||||||| ||| ||||||| |||||
Sbjct: 498 cctggcgccagtactcgccgtaaggcgcgaacgctacgtc 459
>gb|BF628612.2|BF628612 HVSMEb0006L23f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0006L23f, mRNA sequence
Length = 708
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1654 gatgaggtggaggtggccgatga 1676
|||||||||||||||||||||||
Sbjct: 192 gatgaggtggaggtggccgatga 170
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 522 cgaaccgctccggcatgaactcctccg 548
|||||||||||||| ||||||||||||
Sbjct: 420 cgaaccgctccggcctgaactcctccg 394
Score = 42.1 bits (21), Expect = 0.070
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 437 gggcagatcctccggccggagccgaacgg 465
||||||||||||||||||| ||||||||
Sbjct: 493 gggcagatcctccggccggccccgaacgg 465
>gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011B08f, mRNA sequence
Length = 994
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 434 ccggggcagatcctccggccggagccgaacgggatgaac 472
|||||||| | || ||||||||| |||||||||||||||
Sbjct: 417 ccggggcacagccgccggccggacccgaacgggatgaac 379
>gb|BF065171.2|BF065171 HV_CEb0023M08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M08f, mRNA sequence
Length = 560
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1654 gatgaggtggaggtggccgatga 1676
|||||||||||||||||||||||
Sbjct: 184 gatgaggtggaggtggccgatga 162
>gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j16 3', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 368 tcccaatcaaaatggtacatgagattggcca 398
||||||||||||||||| |||||||| ||||
Sbjct: 170 tcccaatcaaaatggtatatgagattcgcca 200
>gb|BM445092.2|BM445092 EBem09_SQ007_G13_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_G13 5', mRNA sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1654 gatgaggtggaggtggccgatga 1676
|||||||||||||||||||||||
Sbjct: 184 gatgaggtggaggtggccgatga 162
>gb|BG367227.1|BG367227 HVSMEi0011F22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0011F22f, mRNA sequence
Length = 517
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1418 cgccagtactcgccgtagggcacgaa 1443
||||||||||||||||||||| ||||
Sbjct: 479 cgccagtactcgccgtagggcgcgaa 454
>gb|BI952693.1|BI952693 HVSMEm0007G18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G18f, mRNA sequence
Length = 426
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 677 ggcgggtgcaggcgcagcgtctccttgatg 706
||||||||||| || |||||||||||||||
Sbjct: 305 ggcgggtgcagccggagcgtctccttgatg 276
>gb|BE214490.1|BE214490 HV_CEb0003J19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003J19f, mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.018
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 1355 tggcggaaggactgcaccttcttggtgctgagcatgtgcgtggtgaggagtttcctgccc 1414
|||||||| || | ||||||| || |||||||||||| ||||||| | |||||| ||
Sbjct: 484 tggcggaacgagttcaccttccgggcgctgagcatgtgtgtggtgaccaccttcctggcc 425
Query: 1415 tgccgccagtactcgccgtagggcacgaacgcgacgtc 1452
|| | |||| ||||||||||||| |||| || |||||
Sbjct: 424 tgtctccagggctcgccgtagggcgcgaaggcaacgtc 387
Score = 40.1 bits (20), Expect = 0.28
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 1510 gtggtcctgggtgcgcaggacggcgtcggcggcgctgggcgaggacac 1557
|||||| || |||||||||||||| |||| |||| |||||||||||
Sbjct: 329 gtggtcgtgcgtgcgcaggacggccgcggccgcgcgcggcgaggacac 282
>gb|BF262413.2|BF262413 HV_CEa0004D05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004D05f, mRNA sequence
Length = 866
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1414 ctgccgccagtactcgccgtagggcacgaa 1443
||||||||||| ||||||||||||| ||||
Sbjct: 425 ctgccgccagtgctcgccgtagggcgcgaa 396
>gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011E01f, mRNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 439 gcagatcctccggccggagccgaacgggat 468
||||||||||||||||| |||||||||||
Sbjct: 111 gcagatcctccggccggccccgaacgggat 82
>gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34o15 5', mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.018
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 655 gtgcgggaggaggaacggcgccggcgggtgcaggcgcagcgtctccttgatggtcgcctt 714
|||||||||||||| |||| |||| | ||| || || ||||||||||| | | |||||
Sbjct: 378 gtgcgggaggaggagcggcaccggtgtgtgtagccggagcgtctccttcacgacggcctt 319
Query: 715 gaggtagggcatgctgcc 732
||||||| |||||||||
Sbjct: 318 caggtaggccatgctgcc 301
>gb|BJ471507.1|BJ471507 BJ471507 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18p14 5', mRNA sequence
Length = 341
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 677 ggcgggtgcaggcgcagcgtctccttgatg 706
||||||||||| || |||||||||||||||
Sbjct: 206 ggcgggtgcagccggagcgtctccttgatg 177
>gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H18
5-PRIME, mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 677 ggcgggtgcaggcgcagcgtctccttgatg 706
|||||||||| ||||||||||||||||||
Sbjct: 351 ggcgggtgcacccgcagcgtctccttgatg 322
>emb|AJ495774.1|HVU495774 Hordeum vulgare partial mRNA for putative cytochrome P450
Length = 1790
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1414 ctgccgccagtactcgccgtagggcacgaa 1443
||||||||||| ||||||||||||| ||||
Sbjct: 454 ctgccgccagtgctcgccgtagggcgcgaa 425
>gb|AY989887.1| Hordeum vulgare subsp. vulgare cytochrome P450 monooxygenase
CYP71U4v2 mRNA, complete cds
Length = 1578
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1414 ctgccgccagtactcgccgtagggcacgaa 1443
||||||||||| ||||||||||||| ||||
Sbjct: 390 ctgccgccagtgctcgccgtagggcgcgaa 361
>gb|BF253916.1|BF253916 HVSMEf0002H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002H19f, mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1413 cctgccgccagtactcgccgtaggg 1437
|||||||||||| ||||||||||||
Sbjct: 581 cctgccgccagtgctcgccgtaggg 557
>gb|BG365432.1|BG365432 HVSMEi0002K17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002K17f, mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.070
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 523 gaaccgctccggcatgaactcctccggcttctcccac 559
|||||||||||||| ||||||| ||||||||||||
Sbjct: 244 gaaccgctccggcacgaactccgttggcttctcccac 208
>gb|BI958974.1|BI958974 HVSMEn0017I07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0017I07f,
mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1687 gcccgggggcgaaggcgggag 1707
|||||||||||||||||||||
Sbjct: 474 gcccgggggcgaaggcgggag 454
>gb|AV925094.1|AV925094 AV925094 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd21h06 5', mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1653 cgatgaggtggaggtggccgatgat 1677
||||||||||||||| |||||||||
Sbjct: 217 cgatgaggtggaggttgccgatgat 193
>gb|CA016903.1|CA016903 HV05M12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05M12
3-PRIME, mRNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 522 cgaaccgctccggcatgaactcctc 546
|||||| ||||||||||||||||||
Sbjct: 301 cgaacctctccggcatgaactcctc 325
>gb|AU252310.1|AU252310 AU252310 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C03 similar to cytochrome P450
CYP99A1, mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 522 cgaaccgctccggcatgaactcctc 546
|||||| ||||||||||||||||||
Sbjct: 635 cgaacctctccggcatgaactcctc 611
>gb|BF622306.2|BF622306 HVSMEa0002K13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002K13f, mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 gaggaacggcgccggcgggt 683
||||||||||||||||||||
Sbjct: 237 gaggaacggcgccggcgggt 218
>gb|BF628736.2|BF628736 HVSMEb0007K07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007K07f, mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1278 ccaccgccgccggcggcgcc 1297
||||||||||||||||||||
Sbjct: 46 ccaccgccgccggcggcgcc 65
>gb|BF256188.2|BF256188 HVSMEf0009A20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0009A20f, mRNA sequence
Length = 800
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1278 ccaccgccgccggcggcgcc 1297
||||||||||||||||||||
Sbjct: 25 ccaccgccgccggcggcgcc 44
>gb|BF259330.2|BF259330 HVSMEf0019E22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019E22f, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 675 ccggcgggtgcaggcgcagcgtctccttgatg 706
||||||||||||| | |||||||||||||||
Sbjct: 465 ccggcgggtgcagcctgagcgtctccttgatg 434
>gb|BG300700.2|BG300700 HVSMEb0018A18f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0018A18f, mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1278 ccaccgccgccggcggcgcc 1297
||||||||||||||||||||
Sbjct: 71 ccaccgccgccggcggcgcc 90
>gb|BE602735.3|BE602735 HVSMEh0101G15f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0101G15f, mRNA sequence
Length = 716
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1278 ccaccgccgccggcggcgcc 1297
||||||||||||||||||||
Sbjct: 67 ccaccgccgccggcggcgcc 86
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 329,994
Number of Sequences: 312970
Number of extensions: 329994
Number of successful extensions: 100571
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100411
Number of HSP's gapped (non-prelim): 155
length of query: 1999
length of database: 175,134,539
effective HSP length: 20
effective length of query: 1979
effective length of database: 168,875,139
effective search space: 334203900081
effective search space used: 334203900081
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)