BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. v... 539 e-152
gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. v... 428 e-118
gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. v... 428 e-118
gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. v... 404 e-111
gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. v... 398 e-109
gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. v... 385 e-105
gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. v... 385 e-105
gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. v... 381 e-104
gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. v... 379 e-103
gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. v... 367 e-100
gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. v... 361 3e-098
gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedl... 202 2e-050
gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. v... 198 3e-049
gb|BF624483.3|BF624483 HVSMEa0016L04f Hordeum vulgare seedl... 143 1e-032
gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. v... 125 3e-027
gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike... 123 1e-026
gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. v... 123 1e-026
gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no... 121 5e-026
gb|CA026092.1|CA026092 HZ54G07r HZ Hordeum vulgare subsp. v... 109 2e-022
gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day ger... 103 1e-020
gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. v... 101 5e-020
gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. v... 101 5e-020
gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. v... 101 5e-020
gb|BQ465058.1|BQ465058 HU02I12r HU Hordeum vulgare subsp. v... 98 8e-019
gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedl... 86 3e-015
gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA li... 86 3e-015
gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm librar... 86 3e-015
gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedl... 76 3e-012
gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa... 70 2e-010
gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. v... 70 2e-010
gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. v... 70 2e-010
gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm libra... 70 2e-010
gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. v... 68 7e-010
gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. v... 68 7e-010
gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. v... 68 7e-010
gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. v... 68 7e-010
gb|BQ467642.1|BQ467642 HS04G18r HS Hordeum vulgare subsp. v... 64 1e-008
gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-a... 62 4e-008
gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA li... 62 4e-008
gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare su... 62 4e-008
gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedl... 58 7e-007
gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 ... 58 7e-007
gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA li... 58 7e-007
gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA li... 58 7e-007
gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedl... 50 2e-004
gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa... 50 2e-004
gb|BQ464988.1|BQ464988 HU02F10r HU Hordeum vulgare subsp. v... 46 0.003
gb|CV061534.1|CV061534 BNEL6A6 Barley EST endosperm library... 44 0.010
gb|CV064131.1|CV064131 BNEL98d2 Barley EST endosperm librar... 44 0.010
>gb|BU990653.1|BU990653 HF25K21r HF Hordeum vulgare subsp. vulgare cDNA clone HF25K21
5-PRIME, mRNA sequence
Length = 674
Score = 539 bits (272), Expect = e-152
Identities = 451/508 (88%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 379 tccatcgatgttgccttggtacttggatcttggatagt-taagttcttcgcatttcggac 437
|||||| |||||||||||||||||||| |||||||||| ||||| |||| ||||| ||||
Sbjct: 673 tccatcaatgttgccttggtacttggaccttggatagtgtaagt-cttcacattttggac 615
Query: 438 aatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggct 497
|| | | |||||| ||||| || ||||||| |||||||||||||||||||| |||||||
Sbjct: 614 aaaacaccttcactgtgcttgacctaggaatgtctgattgccctgctggaagacagggct 555
Query: 498 ggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaaca 557
||||||||||||| || | |||||||| ||||| || || ||||||||||| || ||||
Sbjct: 554 ggccacagcagtatactcgagggcatctgccaaaatcataattcttgaacttttctaaca 495
Query: 558 ttgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatct 617
||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 494 ttgcagctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatct 435
Query: 618 ctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaagact 677
||||||||||||| |||||||||||||||||||| || || | ||| ||||||||||||
Sbjct: 434 ctgcagatgactcaattaattcattttgctcctcagtgaatacatcaccattagaagact 375
Query: 678 caatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccac 737
||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 374 caatgtctaggatgagatcaagtgcataatcataatatggcacctgattgcttaggccac 315
Query: 738 acaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctc 797
| || || ||||||||||||||||| |||||||| |||||||| |||||||| |||||||
Sbjct: 314 agagattgaaatcatcctgtatataatcatcatcaatctcacagaagaattcgttgcctc 255
Query: 798 gcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcag 857
|||| ||||||||||||||||||| || ||||||||||| || ||||| || |||||||
Sbjct: 254 gcaagctacagaaccatgaaatccaagatgtgtcctctccttcagaaccgctaacatcag 195
Query: 858 aatcttcactgtcagtttcaaattcctc 885
||||||||||||||||||| ||||||||
Sbjct: 194 aatcttcactgtcagtttcgaattcctc 167
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 87 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 28
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 27 ttccggtccatctccgcggcgccgc 3
>gb|BQ465196.1|BQ465196 HU02O17r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
5-PRIME, mRNA sequence
Length = 597
Score = 428 bits (216), Expect = e-118
Identities = 330/368 (89%)
Strand = Plus / Minus
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || || ||||||||||| || |||||||||||||||||||||||
Sbjct: 594 gggcatctgccaaaatcataattcttgaacttttctaacattgcagctagacccttgcta 535
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 534 gttaagatgtaccgtgcatggattaaaccatacagcatctctgcagatgactcaattaat 475
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|||||||||||||| || || | ||| ||||||||||||||||||||| ||||||||||
Sbjct: 474 tcattttgctcctcagtgaatacatcaccattagaagactcaatgtctaggatgagatca 415
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
||||||||||||||||||||||||||||| || || ||||| || || ||||||||||||
Sbjct: 414 agtgcataatcataatatggcacctgattgcttaggccacagagattgaaatcatcctgt 355
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
||||| |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 354 atataatcatcatcaatctcacagaagaattcgttgcctcgcaagctacagaaccatgaa 295
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttca 877
||||| || ||||||||||| || ||||| || ||||||||||||||||||||||||||
Sbjct: 294 atccaagatgtgtcctctccttcagaaccgctaacatcagaatcttcactgtcagtttcg 235
Query: 878 aattcctc 885
||||||||
Sbjct: 234 aattcctc 227
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 147 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 88
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 87 ttccggtccatctccgcggcgccgc 63
>gb|BQ470277.1|BQ470277 HX02G12r HX Hordeum vulgare subsp. vulgare cDNA clone HX02G12
5-PRIME, mRNA sequence
Length = 652
Score = 428 bits (216), Expect = e-118
Identities = 330/368 (89%)
Strand = Plus / Minus
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || || ||||||||||| || |||||||||||||||||||||||
Sbjct: 651 gggcatctgccaaaatcataattcttgaacttttctaacattgcagctagacccttgcta 592
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 591 gttaagatgtaccgtgcatggattaaaccatacagcatctctgcagatgactcaattaat 532
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|||||||||||||| || || | ||| ||||||||||||||||||||| ||||||||||
Sbjct: 531 tcattttgctcctcagtgaatacatcaccattagaagactcaatgtctaggatgagatca 472
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
||||||||||||||||||||||||||||| || || ||||| || || ||||||||||||
Sbjct: 471 agtgcataatcataatatggcacctgattgcttaggccacagagattgaaatcatcctgt 412
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
||||| |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 411 atataatcatcatcaatctcacagaagaattcgttgcctcgcaagctacagaaccatgaa 352
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttca 877
||||| || ||||||||||| || ||||| || ||||||||||||||||||||||||||
Sbjct: 351 atccaagatgtgtcctctccttcagaaccgctaacatcagaatcttcactgtcagtttcg 292
Query: 878 aattcctc 885
||||||||
Sbjct: 291 aattcctc 284
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 204 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 145
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 144 ttccggtccatctccgcggcgccgc 120
>gb|CA007157.1|CA007157 HU06P10r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P10
5-PRIME, mRNA sequence
Length = 561
Score = 404 bits (204), Expect = e-111
Identities = 300/332 (90%)
Strand = Plus / Minus
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||
Sbjct: 559 aacattgcagctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagc 500
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || || | ||| ||||||||
Sbjct: 499 atctctgcagatgactcaattaattcattttgctcctcagtgaatacatcaccattagaa 440
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 439 gactcaatgtctaggatgagatcaagtgcataatcataatatggcacctgattgcttagg 380
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| || || ||||||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct: 379 ccacagagattgaaatcatcctgtatataatcatcatcaatctcacagaagaattcgttg 320
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||||||| ||||||||||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 319 cctcgcaagctacagaaccatgaaatccaagatgtgtcctctccttcagaaccgctaaca 260
Query: 854 tcagaatcttcactgtcagtttcaaattcctc 885
||||||||||||||||||||||| ||||||||
Sbjct: 259 tcagaatcttcactgtcagtttcgaattcctc 228
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 148 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 89
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 88 ttccggtccatctccgcggcgccgc 64
>gb|CA032718.1|CA032718 HX14A06r HX Hordeum vulgare subsp. vulgare cDNA clone HX14A06
5-PRIME, mRNA sequence
Length = 633
Score = 398 bits (201), Expect = e-109
Identities = 297/329 (90%)
Strand = Plus / Minus
Query: 557 attgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatc 616
|||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 633 attgcagctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatc 574
Query: 617 tctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaagac 676
|||||||||||||| |||||||||||||||||||| || || | ||| |||||||||||
Sbjct: 573 tctgcagatgactcaattaattcattttgctcctcagtgaatacatcaccattagaagac 514
Query: 677 tcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcagacca 736
|||||||||| ||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 513 tcaatgtctaggatgagatcaagtgcataatcataatatggcacctgattgcttaggcca 454
Query: 737 cacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcct 796
|| || || ||||||||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct: 453 cagagattgaaatcatcctgtatataatcatcatcaatctcacagaagaattcgttgcct 394
Query: 797 cgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatca 856
||||| ||||||||||||||||||| || ||||||||||| || ||||| || ||||||
Sbjct: 393 cgcaagctacagaaccatgaaatccaagatgtgtcctctccttcagaaccgctaacatca 334
Query: 857 gaatcttcactgtcagtttcaaattcctc 885
|||||||||||||||||||| ||||||||
Sbjct: 333 gaatcttcactgtcagtttcgaattcctc 305
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 225 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 166
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 165 ttccggtccatctccgcggcgccgc 141
>gb|BQ467754.1|BQ467754 HS04M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
5-PRIME, mRNA sequence
Length = 659
Score = 385 bits (194), Expect = e-105
Identities = 290/322 (90%)
Strand = Plus / Minus
Query: 564 ctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcag 623
||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 659 ctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatctctgcag 600
Query: 624 atgactcgattaattcattttgctcctcggtaaacccgtcatcattagaagactcaatgt 683
||||||| |||||||||||||||||||| || || | ||| ||||||||||||||||||
Sbjct: 599 atgactcaattaattcattttgctcctcagtgaatacatcaccattagaagactcaatgt 540
Query: 684 ctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacaggt 743
||| ||||||||||||||||||||||||||||||||||||||| || || ||||| || |
Sbjct: 539 ctaggatgagatcaagtgcataatcataatatggcacctgattgcttaggccacagagat 480
Query: 744 taaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatg 803
| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||
Sbjct: 479 tgaaatcatcctgtatataatcatcatcaatctcacagaagaattcgttgcctcgcaagc 420
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
||||||||||||||||||| || ||||||||||| || ||||| || |||||||||||||
Sbjct: 419 tacagaaccatgaaatccaagatgtgtcctctccttcagaaccgctaacatcagaatctt 360
Query: 864 cactgtcagtttcaaattcctc 885
||||||||||||| ||||||||
Sbjct: 359 cactgtcagtttcgaattcctc 338
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 258 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 199
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 198 ttccggtccatctccgcggcgccgc 174
>gb|CB859369.1|CB859369 HI10E02w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
3-PRIME, mRNA sequence
Length = 616
Score = 385 bits (194), Expect = e-105
Identities = 342/389 (87%), Gaps = 2/389 (0%)
Strand = Plus / Plus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 214 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 273
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 274 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 333
Query: 384 cgatgttgccttggtacttggatcttggatagt-taagttcttcgcatttcggacaatat 442
| |||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct: 334 caatgttgccttggtacttggaccttggatagtgtaag-tcttcacattttggacaaaac 392
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggcca 502
| |||||| ||||| || ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 393 accttcactgtgcttgacctaggaatgtctgattgccctgctggaagacagggctggcca 452
Query: 503 cagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacattgca 562
|||||||| || | |||||||| ||||| || || ||||||||||| || |||||||||
Sbjct: 453 cagcagtatactcgagggcatctgccaaaatcataattcttgaacttttctaacattgca 512
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgca 622
|||||||||||||| ||||| ||||| |||||||| |||| ||| |||||||||||||||
Sbjct: 513 gctagacccttgctagttaagatgtaccgtgcatggattanaccatacagcatctctgca 572
Query: 623 gatgactcgattaattcattttgctcctc 651
|||||||| ||||||||||||||||||||
Sbjct: 573 gatgactcaattaattcattttgctcctc 601
>gb|BQ663500.1|BQ663500 HU02O17u HU Hordeum vulgare subsp. vulgare cDNA clone HU02O17
3-PRIME, mRNA sequence
Length = 596
Score = 381 bits (192), Expect = e-104
Identities = 338/384 (88%), Gaps = 2/384 (0%)
Strand = Plus / Plus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 214 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 273
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 274 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 333
Query: 384 cgatgttgccttggtacttggatcttggatagt-taagttcttcgcatttcggacaatat 442
| |||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct: 334 caatgttgccttggtacttggaccttggatagtgtaag-tcttcacattttggacaaaac 392
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggcca 502
| |||||| ||||| || ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 393 accttcactgtgcttgacctaggaatgtctgattgccctgctggaagacagggctggcca 452
Query: 503 cagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacattgca 562
|||||||| || | |||||||| ||||| || || ||||||||||| || |||||||||
Sbjct: 453 cagcagtatactcgagggcatctgccaaaatcataattcttgaacttttctaacattgca 512
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgca 622
|||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 513 gctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatctctgca 572
Query: 623 gatgactcgattaattcattttgc 646
|||||||| |||||||||||||||
Sbjct: 573 gatgactcaattaattcattttgc 596
>gb|BU989668.1|BU989668 HF22F24r HF Hordeum vulgare subsp. vulgare cDNA clone HF22F24
5-PRIME, mRNA sequence
Length = 486
Score = 379 bits (191), Expect = e-103
Identities = 287/319 (89%)
Strand = Plus / Minus
Query: 567 gacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatg 626
|||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 486 gacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatctctgcagatg 427
Query: 627 actcgattaattcattttgctcctcggtaaacccgtcatcattagaagactcaatgtcta 686
|||| |||||||||||||||||||| || || | ||| |||||||||||||||||||||
Sbjct: 426 actcaattaattcattttgctcctcagtgaatacatcaccattagaagactcaatgtcta 367
Query: 687 agatgagatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaa 746
||||||||||||||||||||||||||||||||||||||| || || ||||| || || |
Sbjct: 366 ggatgagatcaagtgcataatcataatatggcacctgattgcttaggccacagagattga 307
Query: 747 aatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtac 806
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |||
Sbjct: 306 aatcatcctgtatataatcatcatcaatctcacagaagaattcgttgcctcgcaagctac 247
Query: 807 agaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcac 866
|||||||||||||||| || ||||||||||| || ||||| || ||||||||||||||||
Sbjct: 246 agaaccatgaaatccaagatgtgtcctctccttcagaaccgctaacatcagaatcttcac 187
Query: 867 tgtcagtttcaaattcctc 885
|||||||||| ||||||||
Sbjct: 186 tgtcagtttcgaattcctc 168
Score = 65.9 bits (33), Expect = 3e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 88 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 29
Query: 1025 ttccggtcc 1033
|||||||||
Sbjct: 28 ttccggtcc 20
>gb|BQ662921.1|BQ662921 HS04M10u HS Hordeum vulgare subsp. vulgare cDNA clone HS04M10
3-PRIME, mRNA sequence
Length = 588
Score = 367 bits (185), Expect = e-100
Identities = 331/377 (87%), Gaps = 2/377 (0%)
Strand = Plus / Plus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 213 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 272
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 273 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 332
Query: 384 cgatgttgccttggtacttggatcttggatagt-taagttcttcgcatttcggacaatat 442
| |||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct: 333 caatgttgccttggtacttggaccttggatagtgtaag-tcttcacattttggacaaaac 391
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggcca 502
| |||||| ||||| || ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 392 accttcactgtgcttgacctaggaatgtctgattgccctgctggaagacagggctggcca 451
Query: 503 cagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacattgca 562
|||||||| || | |||||||| ||||| || || ||||||||||| || |||||||||
Sbjct: 452 cagcagtatactcgagggcatctgccaaaatcataattcttgaacttttctaacattgca 511
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgca 622
|||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 512 gctagacccttgctagttaagatgtaccgtgcatggattaaaccatacagcatctctgca 571
Query: 623 gatgactcgattaattc 639
|||||||| ||||||||
Sbjct: 572 gatgactcaattaattc 588
>gb|BU998184.1|BU998184 HI10E02r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E02
5-PRIME, mRNA sequence
Length = 587
Score = 361 bits (182), Expect = 3e-098
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 584 atgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattt 643
||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 585 atgtaccgtgcatggattaaaccatacagcatctctgcagatgactcaattaattcattt 526
Query: 644 tgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgca 703
|||||||| || || | ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 525 tgctcctcagtgaatacatcaccattagaagactcaatgtctaggatgagatcaagtgca 466
Query: 704 taatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgtatatag 763
||||||||||||||||||||||| || || ||||| || || |||||||||||||||||
Sbjct: 465 taatcataatatggcacctgattgcttaggccacagagattgaaatcatcctgtatataa 406
Query: 764 tcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccag 823
|||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 405 tcatcatcaatctcacagaagaattcgttgcctcgcaagctacagaaccatgaaatccaa 346
Query: 824 gacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttcaaattcc 883
|| ||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 345 gatgtgtcctctccttcagaaccgctaacatcagaatcttcactgtcagtttcgaattcc 286
Query: 884 tc 885
||
Sbjct: 285 tc 284
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 204 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 145
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 144 ttccggtccatctccgcggcgccgc 120
>gb|BF617114.2|BF617114 HVSMEc0014K08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014K08f, mRNA sequence
Length = 782
Score = 202 bits (102), Expect = 2e-050
Identities = 168/190 (88%)
Strand = Plus / Minus
Query: 696 caagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcct 755
||||||||||||||||| |||||||||||| || || ||||| || || ||||||||||
Sbjct: 513 caagtgcataatcataaattggcacctgattgcttaggccacagagattgaaatcatcct 454
Query: 756 gtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatg 815
||||||| |||||||| ||||| || |||||||| ||||||||||| ||||||||||||
Sbjct: 453 gtatataatcatcatcaatctcccagaagaattcgttgcctcgcaagctacagaaccatg 394
Query: 816 aaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagttt 875
||||||| || ||||||||||| || ||||| || |||||||||||||||||||||||||
Sbjct: 393 aaatccaagatgtgtcctctccttcagaaccgctaacatcagaatcttcactgtcagttt 334
Query: 876 caaattcctc 885
| ||||||||
Sbjct: 333 cgaattcctc 324
Score = 73.8 bits (37), Expect = 1e-011
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 244 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgc 185
Query: 1025 ttccggtccatccctgcgccgccgc 1049
|||||||||||| | ||| ||||||
Sbjct: 184 ttccggtccatctccgcggcgccgc 160
>gb|BQ662841.1|BQ662841 HS04G18u HS Hordeum vulgare subsp. vulgare cDNA clone HS04G18
3-PRIME, mRNA sequence
Length = 435
Score = 198 bits (100), Expect = 3e-049
Identities = 195/224 (87%), Gaps = 2/224 (0%)
Strand = Plus / Plus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 213 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 272
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 273 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 332
Query: 384 cgatgttgccttggtacttggatcttggatagt-taagttcttcgcatttcggacaatat 442
| |||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct: 333 caatgttgccttggtacttggaccttggatagtgtaag-tcttcacattttggacaaaac 391
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctgg 486
| |||||| ||||| || ||||||| |||||||||||||||||
Sbjct: 392 accttcactgtgcttgacctaggaatgtctgattgccctgctgg 435
>gb|BF624483.3|BF624483 HVSMEa0016L04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0016L04f, mRNA sequence
Length = 765
Score = 143 bits (72), Expect = 1e-032
Identities = 159/188 (84%)
Strand = Plus / Minus
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|||||| ||||| || ||||| |||||| ||| ||||| || || || |||||||||||
Sbjct: 473 agtgcagaatcacaagatggcgcctgatgacttagaccccagagattgaaatcatcctgg 414
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
| ||| |||||| | |||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct: 413 acataatcatcaccaatctcacacaagaattcgttgcctcgcaagctacagaaccaggaa 354
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttca 877
||||| || ||||||||||| || || || | ||||||||||||||||||||||||||
Sbjct: 353 atccaagatgtgtcctctccttcagacccgcaaacatcagaatcttcactgtcagtttcg 294
Query: 878 aattcctc 885
||||||||
Sbjct: 293 aattcctc 286
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1002 tctcgagcgcgtccttgatgcgcttccggtccat 1035
|||| ||||| |||||||||||||||||||||||
Sbjct: 169 tctccagcgcctccttgatgcgcttccggtccat 136
>gb|BU990124.1|BU990124 HF24C15r HF Hordeum vulgare subsp. vulgare cDNA clone HF24C15
5-PRIME, mRNA sequence
Length = 700
Score = 125 bits (63), Expect = 3e-027
Identities = 474/611 (77%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 638 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 579
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 578 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 519
Query: 383 tcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatat 442
|| ||||||| ||| || |||||||| ||||||| || ||||| || || || || ||
Sbjct: 518 tcaatgttgctttgatatttggatctcggatagtagagatcttcacactttgggcagtaa 459
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggcca 502
|| |||||| | || || | ||||| || || || || |||||||||| || |||||
Sbjct: 458 attttcacattactagaacgaggaatgtccgactggccaactggaaggcatggttggccg 399
Query: 503 cagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacattgca 562
| |||| ||| || || ||||| |||||||| ||||||||| | || ||||||||||||
Sbjct: 398 ctacagtgcactcttggacatctgccaaagtcatagttcttgtatttatccaacattgca 339
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgca 622
|| | || || || |||| ||| ||||| ||||||| || || || ||||||||||||
Sbjct: 338 gccaaccctttacttgttagaatatatcgaacatgaatcaatccataaagcatctctgca 279
Query: 623 gatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaagactcaatg 682
| ||| || || | |||||| ||||| || || ||| ||| ||| |||||||| |
Sbjct: 278 gctgattcaataagttcattctgctcttctgtgaacatatcaccatgtgaagactcgaca 219
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
|| || || || ||||| ||||| ||||||||||| || ||| || || ||||| ||
Sbjct: 218 tccaatataaggtcaagagcatattcataatatggaacttgaccgcttagcccacagaga 159
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| ||||| || ||||| || || ||||| | ||||| ||||| |||||||| |||||
Sbjct: 158 ttgaaatcgtcttgtatgtaatcgtcatcaacttcacagaagaactcattgccccgcaag 99
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
||||||||||||||||||| || || || ||||| || |||||||||| || || |||
Sbjct: 98 ctacagaaccatgaaatccacgatgtatcttctccatcagaaccactcaggtctgattct 39
Query: 863 tcactgtcagt 873
|||||||||||
Sbjct: 38 tcactgtcagt 28
>gb|BI950575.1|BI950575 HVSMEl0021H10f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0021H10f, mRNA sequence
Length = 705
Score = 123 bits (62), Expect = 1e-026
Identities = 110/126 (87%)
Strand = Plus / Minus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 484 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 425
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 424 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 365
Query: 384 cgatgt 389
| ||||
Sbjct: 364 caatgt 359
>gb|BQ658439.1|BQ658439 HB09C11w BC Hordeum vulgare subsp. vulgare cDNA clone HB09C11
3-PRIME, mRNA sequence
Length = 676
Score = 123 bits (62), Expect = 1e-026
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 214 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 273
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 274 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 333
Query: 384 cgatgt 389
| ||||
Sbjct: 334 caatgt 339
>gb|BM101420.1|BM101420 EBpi01_SQ003_M19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_M19 5', mRNA sequence
Length = 339
Score = 121 bits (61), Expect = 5e-026
Identities = 106/121 (87%)
Strand = Plus / Minus
Query: 264 gcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggct 323
||||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||
Sbjct: 125 gcttgtgaagtttgaagccaaaaacccttggaacgtattgctgtgatggcttctgtggct 66
Query: 324 tcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccat 383
||| ||| | || ||||||| ||| ||||||||||| ||||| |||||||||| |||||
Sbjct: 65 tcaggtgtggatatgtcatcaagaagagatgagggaacgtcgtaccaaagtatgctccat 6
Query: 384 c 384
|
Sbjct: 5 c 5
>gb|CA026092.1|CA026092 HZ54G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ54G07
5-PRIME, mRNA sequence
Length = 410
Score = 109 bits (55), Expect = 2e-022
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 289 ccttggagtgtattgctgtgacggcttctgcggcttcaagtgcgagtaagtcatcaggaa 348
||||||| |||||||||||| |||||||| ||||||| ||| | | ||||||| |||
Sbjct: 123 ccttggaacgtattgctgtgatggcttctgtggcttcaggtgtaaaaatgtcatcaagaa 64
Query: 349 aagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatct 408
||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||| ||
Sbjct: 63 gagatgagggaacgtcgtaccaaagtatgctccatcaatgttgccttggtacttggacct 4
Query: 409 tgg 411
|||
Sbjct: 3 tgg 1
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 421 ttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccc 480
|||||| ||||| |||||| | | |||||| ||||| || ||||||| |||||||||||
Sbjct: 325 ttcttcacattttggacaaaacaccttcactgtgcttgacctaggaatgtctgattgccc 384
Query: 481 tgctggaaggcagggctggccacagc 506
||||||||| ||||||||||||||||
Sbjct: 385 tgctggaagacagggctggccacagc 410
>gb|BM444264.1|BM444264 EBem09_SQ004_K07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_K07 5', mRNA sequence
Length = 574
Score = 103 bits (52), Expect = 1e-020
Identities = 433/560 (77%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 561 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 502
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 501 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 442
Query: 383 tcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatat 442
|| ||||||| ||| || |||||||| ||||||| || ||||| || || || || ||
Sbjct: 441 tcaatgttgctttgatatttggatctcggatagtagagatcttcacactttgggcagtaa 382
Query: 443 atcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggcca 502
|| |||||| | || || | ||||| || || || || |||||||||| || |||||
Sbjct: 381 attttcacattactagaacgaggaatgtccgactggccaactggaaggcatggttggccg 322
Query: 503 cagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaacattgca 562
| |||| ||| || || ||||| |||||||| ||||||||| | || ||||||||||||
Sbjct: 321 ctacagtgcactcttggacatctgccaaagtcatagttcttgtatttatccaacattgca 262
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgca 622
|| | || || || |||| ||| ||||| ||||||| || || || ||||||||||||
Sbjct: 261 gccaaccctttacttgttagaatatatcgaacatgaatcaatccataaagcatctctgca 202
Query: 623 gatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaagactcaatg 682
| ||| || || | |||||| ||||| || || ||| ||| ||| |||||||| |
Sbjct: 201 gctgattcaataagttcattctgctcttctgtgaacatatcaccatgtgaagactcgaca 142
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
|| || || || ||||| ||||| ||||||||||| || ||| || || ||||| ||
Sbjct: 141 tccaatataaggtcaagagcatattcataatatggaacttgaccgcttagcccacagaga 82
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| ||||| || ||||| || || ||||| | ||||| ||||| |||||||| |||||
Sbjct: 81 ttgaaatcgtcttgtatgtaatcgtcatcaacttcacagaagaactcattgccccgcaag 22
Query: 803 gtacagaaccatgaaatcca 822
|||||||||||||||||||
Sbjct: 21 ctacagaaccatgaaatcca 2
>gb|BQ465233.1|BQ465233 HU03A07r HU Hordeum vulgare subsp. vulgare cDNA clone HU03A07
5-PRIME, mRNA sequence
Length = 552
Score = 101 bits (51), Expect = 5e-020
Identities = 306/391 (78%)
Strand = Plus / Minus
Query: 483 ctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttct 542
|||||||||| || ||||| | |||| ||| || || ||||| |||||||| |||||||
Sbjct: 551 ctggaaggcatggttggccgctacagtgcactcttggacatctgccaaagtcatagttct 492
Query: 543 tgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatta 602
|| | || |||||||||||||| | || || || |||| ||| ||||| ||||||| |
Sbjct: 491 tgtatttatccaacattgcagccaaccctttacttgttagaatatatcgaacatgaatca 432
Query: 603 aaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgt 662
| || || ||||||||||||| ||| || || | |||||| ||||| || || ||| |
Sbjct: 431 atccataaagcatctctgcagctgattcaataagttcattctgctcttctgtgaacatat 372
Query: 663 catcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacct 722
|| ||| |||||||| | || || || || ||||| ||||| ||||||||||| || |
Sbjct: 371 caccatgtgaagactcgacatccaatataaggtcaagagcatattcataatatggaactt 312
Query: 723 gattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaa 782
|| || || ||||| || || ||||| || ||||| || || ||||| | ||||| |
Sbjct: 311 gaccgcttagcccacagagattgaaatcgtcttgtatgtaatcgtcatcaacttcacaga 252
Query: 783 agaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcgg 842
|||| |||||||| ||||| ||||||||||||||||||| || || || ||||| || |
Sbjct: 251 agaactcattgccccgcaagctacagaaccatgaaatccacgatgtatcttctccatcag 192
Query: 843 aaccactcacatcagaatcttcactgtcagt 873
||||||||| || || ||||||||||||||
Sbjct: 191 aaccactcaggtctgattcttcactgtcagt 161
>gb|BU972271.1|BU972271 HB21C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB21C19
5-PRIME, mRNA sequence
Length = 526
Score = 101 bits (51), Expect = 5e-020
Identities = 306/391 (78%)
Strand = Plus / Minus
Query: 483 ctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttct 542
|||||||||| || ||||| | |||| ||| || || ||||| |||||||| |||||||
Sbjct: 427 ctggaaggcatggttggccgctacagtgcactcttggacatctgccaaagtcatagttct 368
Query: 543 tgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatta 602
|| | || |||||||||||||| | || || || |||| ||| ||||| ||||||| |
Sbjct: 367 tgtatttatccaacattgcagccaaccctttacttgttagaatatatcgaacatgaatca 308
Query: 603 aaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgt 662
| || || ||||||||||||| ||| || || | |||||| ||||| || || ||| |
Sbjct: 307 atccataaagcatctctgcagctgattcaataagttcattctgctcttctgtgaacatat 248
Query: 663 catcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacct 722
|| ||| |||||||| | || || || || ||||| ||||| ||||||||||| || |
Sbjct: 247 caccatgtgaagactcgacatccaatataaggtcaagagcatattcataatatggaactt 188
Query: 723 gattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaa 782
|| || || ||||| || || ||||| || ||||| || || ||||| | ||||| |
Sbjct: 187 gaccgcttagcccacagagattgaaatcgtcttgtatgtaatcgtcatcaacttcacaga 128
Query: 783 agaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcgg 842
|||| |||||||| ||||| ||||||||||||||||||| || || || ||||| || |
Sbjct: 127 agaactcattgccccgcaagctacagaaccatgaaatccacgatgtatcttctccatcag 68
Query: 843 aaccactcacatcagaatcttcactgtcagt 873
||||||||| || || ||||||||||||||
Sbjct: 67 aaccactcaggtctgattcttcactgtcagt 37
>gb|CA014815.1|CA014815 HT12G23r HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
5-PRIME, mRNA sequence
Length = 649
Score = 101 bits (51), Expect = 5e-020
Identities = 306/391 (78%)
Strand = Plus / Minus
Query: 483 ctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttct 542
|||||||||| || ||||| | |||| ||| || || ||||| |||||||| |||||||
Sbjct: 605 ctggaaggcatggttggccgctacagtgcactcttggacatctgccaaagtcatagttct 546
Query: 543 tgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatta 602
|| | || |||||||||||||| | || || || |||| ||| ||||| ||||||| |
Sbjct: 545 tgtatttatccaacattgcagccaaccctttacttgttagaatatatcgaacatgaatca 486
Query: 603 aaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgt 662
| || || ||||||||||||| ||| || || | |||||| ||||| || || ||| |
Sbjct: 485 atccataaagcatctctgcagctgattcaataagttcattctgctcttctgtgaacatat 426
Query: 663 catcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacct 722
|| ||| |||||||| | || || || || ||||| ||||| ||||||||||| || |
Sbjct: 425 caccatgtgaagactcgacatccaatataaggtcaagagcatattcataatatggaactt 366
Query: 723 gattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaa 782
|| || || ||||| || || ||||| || ||||| || || ||||| | ||||| |
Sbjct: 365 gaccgcttagcccacagagattgaaatcgtcttgtatgtaatcgtcatcaacttcacaga 306
Query: 783 agaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcgg 842
|||| |||||||| ||||| ||||||||||||||||||| || || || ||||| || |
Sbjct: 305 agaactcattgccccgcaagctacagaaccatgaaatccacgatgtatcttctccatcag 246
Query: 843 aaccactcacatcagaatcttcactgtcagt 873
||||||||| || || ||||||||||||||
Sbjct: 245 aaccactcaggtctgattcttcactgtcagt 215
>gb|BQ465058.1|BQ465058 HU02I12r HU Hordeum vulgare subsp. vulgare cDNA clone HU02I12
5-PRIME, mRNA sequence
Length = 659
Score = 97.6 bits (49), Expect = 8e-019
Identities = 210/264 (79%)
Strand = Plus / Minus
Query: 298 gtattgctgtgacggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagg 357
||||||||| | |||||||| |||||||| || |||| ||||||| ||| | ||||||
Sbjct: 657 gtattgctgcgctggcttctgtggcttcaactgtgagtgggtcatcatgaacatatgagg 598
Query: 358 gaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttggatagtt 417
|| |||||||||||||||| || || | ||| |||||| ||| |||||||| ||||
Sbjct: 597 aaacgtcgtcccaaagtatgcnccgtctgtattggcttggtgcttcgatcttgggtagta 538
Query: 418 aagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattg 477
|| ||||||||||| || ||||||||||| || || || | |||| | ||| || ||
Sbjct: 537 gagatcttcgcatttagggcaatatatcttgacggtactggtcctagcgatatcggactg 478
Query: 478 ccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgta 537
|| |||||| |||||||||||| ||||| | || | |||||| || |||||||| |
Sbjct: 477 gcccattggaagacagggctggccagagcaggatacgcgggggcaccttccaaagtcaca 418
Query: 538 gttcttgaacttctccaacattgc 561
||||||||||||||||| ||||||
Sbjct: 417 gttcttgaacttctccagcattgc 394
>gb|BF265822.1|BF265822 HV_CEa0013G21f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G21f, mRNA sequence
Length = 768
Score = 85.7 bits (43), Expect = 3e-015
Identities = 214/271 (78%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||||||||||||| | ||||||| ||| ||||| | || || ||||| | ||||
Sbjct: 595 ccaaagtcgtagttcttgtatttctccagcatagcagccaaccctttactggtcagaatg 536
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
|||||||||||||| | || |||| |||||| |||| ||| || | || ||||||||
Sbjct: 535 tatcgtgcatgaatcagcccatacaacatctcagcagctgattccactagctcattttgt 476
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|| || || || ||| ||| |||||||| || ||||| ||||||||||| ||||||
Sbjct: 475 tcttctgtgaaaatatcaccatgggaagactcgatatctaaaatgagatcaagagcataa 416
Query: 707 tcataatatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtca 766
||||||||||| || ||| | || || ||||| || || || ||||| || || || |||
Sbjct: 415 tcataatatggaacttgactgctaagcccacaaagattgaagtcatcttgaatgtaatca 356
Query: 767 tcatcgatctcacaaaagaattcattgcctc 797
||||||| ||||| ||||| ||||| ||||
Sbjct: 355 tcatcgacttcacagaagaactcattccctc 325
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 132 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 88
>gb|AV917174.1|AV917174 AV917174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8d05 5', mRNA sequence
Length = 623
Score = 85.7 bits (43), Expect = 3e-015
Identities = 214/271 (78%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
|||||||||||||||||| | ||||||| ||| ||||| | || || ||||| | ||||
Sbjct: 521 ccaaagtcgtagttcttgtatttctccagcatagcagccaaccctttactggtcagaatg 462
Query: 587 tatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgc 646
|||||||||||||| | || |||| |||||| |||| ||| || | || ||||||||
Sbjct: 461 tatcgtgcatgaatcagcccatacaacatctcagcagctgattccactagctcattttgt 402
Query: 647 tcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataa 706
|| || || || ||| ||| |||||||| || ||||| ||||||||||| ||||||
Sbjct: 401 tcttctgtgaaaatatcaccatgggaagactcgatatctaaaatgagatcaagagcataa 342
Query: 707 tcataatatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtca 766
||||||||||| || ||| | || || ||||| || || || ||||| || || || |||
Sbjct: 341 tcataatatggaacttgactgctaagcccacaaagattgaagtcatcttgaatgtaatca 282
Query: 767 tcatcgatctcacaaaagaattcattgcctc 797
||||||| ||||| ||||| ||||| ||||
Sbjct: 281 tcatcgacttcacagaagaactcattccctc 251
>gb|CV062418.1|CV062418 BNEL79g9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79g9 5' similar to possible
protein kinase CK2 regulatory subunit, mRNA sequence
Length = 700
Score = 85.7 bits (43), Expect = 3e-015
Identities = 208/263 (79%)
Strand = Plus / Plus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| ||||| ||||| ||||| |||||| |||| | ||| || || |||||||||
Sbjct: 372 gtcatcagaaaaaggtgaggaaatgttgtcccatagtaggctccgtcaatattgccttgg 431
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || || | |||||||| | |||||||| || ||||| ||||||||||| || ||
Sbjct: 432 tatttagaacgtggatagtagatgtcttcgcacttaggacagtatatcttcactgtacta 491
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| ||| ||||||||| || ||| ||||| || || |||||||| || || |
Sbjct: 492 gatcggtgaatatctgattgtccaattggtaggcatggttgtccacagcaataaacacgt 551
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|| |||| |||||||||||||||||| | ||||||| ||| ||||| | || || |||
Sbjct: 552 ggacatcgtccaaagtcgtagttcttgtatttctccagcatagcagccaaccctttactg 611
Query: 578 gttaaaatgtatcgtgcatgaat 600
|| | ||||||||||||||||||
Sbjct: 612 gtcagaatgtatcgtgcatgaat 634
>gb|BG300415.1|BG300415 HVSMEb0016P04f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016P04f, mRNA sequence
Length = 625
Score = 75.8 bits (38), Expect = 3e-012
Identities = 122/150 (81%)
Strand = Plus / Minus
Query: 298 gtattgctgtgacggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagg 357
||||||||| | |||||||| |||||||| || |||| ||||||| ||| | ||||||
Sbjct: 152 gtattgctgcgctggcttctgtggcttcaactgtgagtgggtcatcatgaacatatgagg 93
Query: 358 gaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttggatagtt 417
|| |||||||||||||||| || || | ||| |||||| ||| |||||||| ||||
Sbjct: 92 aaacgtcgtcccaaagtatgccccgtctgtattggcttggtgcttcgatcttgggtagta 33
Query: 418 aagttcttcgcatttcggacaatatatctt 447
|| ||||||||||| || |||||||||||
Sbjct: 32 gagatcttcgcatttagggcaatatatctt 3
>gb|BG415776.2|BG415776 HVSMEk0007M10f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007M10f, mRNA sequence
Length = 664
Score = 69.9 bits (35), Expect = 2e-010
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 671 gaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactc 730
|||||||| || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 538 gaagactcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgcta 479
Query: 731 agaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattca 790
|| ||||| || || || ||||| || || || |||||||||| ||||| ||||| |||
Sbjct: 478 agcccacaaagattgaagtcatcttgaatgtaatcatcatcgacttcacagaagaactca 419
Query: 791 ttgcctc 797
|| ||||
Sbjct: 418 ttccctc 412
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 219 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 175
>gb|CA002012.1|CA002012 HS06E04r HS Hordeum vulgare subsp. vulgare cDNA clone HS06E04
5-PRIME, mRNA sequence
Length = 628
Score = 69.9 bits (35), Expect = 2e-010
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 671 gaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactc 730
|||||||| || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 537 gaagactcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgcta 478
Query: 731 agaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattca 790
|| ||||| || || || ||||| || || || |||||||||| ||||| ||||| |||
Sbjct: 477 agcccacaaagattgaagtcatcttgaatgtaatcatcatcgacttcacagaagaactca 418
Query: 791 ttgcctc 797
|| ||||
Sbjct: 417 ttccctc 411
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 218 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 174
>gb|CA021658.1|CA021658 HZ40K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40K23
5-PRIME, mRNA sequence
Length = 567
Score = 69.9 bits (35), Expect = 2e-010
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 671 gaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactc 730
|||||||| || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 533 gaagactcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgcta 474
Query: 731 agaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattca 790
|| ||||| || || || ||||| || || || |||||||||| ||||| ||||| |||
Sbjct: 473 agcccacaaagattgaagtcatcttgaatgtaatcatcatcgacttcacagaagaactca 414
Query: 791 ttgcctc 797
|| ||||
Sbjct: 413 ttccctc 407
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 214 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 170
>gb|CV054303.1|CV054303 BNEL109a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL109a5 5' similar to
OJ1058_B11.17, mRNA sequence
Length = 602
Score = 69.9 bits (35), Expect = 2e-010
Identities = 179/227 (78%)
Strand = Plus / Plus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| ||||| ||||| ||||| |||||| |||| | ||| || || |||||||||
Sbjct: 372 gtcatcagaaaaaggtgaggaaatgttgtcccatagtaggctccgtcaatattgccttgg 431
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || || | |||||||| | |||||||| || ||||| ||||||||||| || ||
Sbjct: 432 tatttagaacgtggatagtagatgtcttcgcacttaggacagtatatcttcactgtacta 491
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| ||| ||||||||| || ||| ||||| || || |||||||| || || |
Sbjct: 492 gatcggtgaatatctgattgtccaattggtaggcatggttgtccacagcaataaacacgt 551
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagc 564
|| |||| |||||||||||||||||| | ||||||| ||| |||||
Sbjct: 552 ggacatcgtccaaagtcgtagttcttgtatttctccagcatagcagc 598
>gb|BQ466667.1|BQ466667 HS01D11T HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
5-PRIME, mRNA sequence
Length = 574
Score = 67.9 bits (34), Expect = 7e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 266 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 207
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 206 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 147
Query: 383 tcgatgttgccttggtacttggatcttggatagt 416
|| ||||||| ||| || |||||||| |||||||
Sbjct: 146 tcaatgttgctttgatatttggatctcggatagt 113
>gb|BQ466990.1|BQ466990 HS02D11r HS Hordeum vulgare subsp. vulgare cDNA clone HS02D11
5-PRIME, mRNA sequence
Length = 538
Score = 67.9 bits (34), Expect = 7e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 266 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 207
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 206 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 147
Query: 383 tcgatgttgccttggtacttggatcttggatagt 416
|| ||||||| ||| || |||||||| |||||||
Sbjct: 146 tcaatgttgctttgatatttggatctcggatagt 113
>gb|BQ662231.1|BQ662231 HS01D11w HS Hordeum vulgare subsp. vulgare cDNA clone HS01D11
3-PRIME, mRNA sequence
Length = 650
Score = 67.9 bits (34), Expect = 7e-010
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 396 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 455
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 456 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 515
Query: 383 tcgatgttgccttggtacttggatcttggatagt 416
|| ||||||| ||| || |||||||| |||||||
Sbjct: 516 tcaatgttgctttgatatttggatctcggatagt 549
>gb|CA009861.1|CA009861 HT12G23u HT Hordeum vulgare subsp. vulgare cDNA clone HT12G23
3-PRIME, mRNA sequence
Length = 543
Score = 67.9 bits (34), Expect = 7e-010
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||| |||
Sbjct: 278 ggcttatgaagtttgaagccaaaaaccttgggtacgtactgctgtgacggtttctggggc 337
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
||||| || | ||| |||||||| || | ||||| || || ||||||||||| | ||
Sbjct: 338 ttcaaatgtgggtaggtcatcagaaacaagtgaggaaacgttgtcccaaagtacgccccg 397
Query: 383 tcgatgttgccttggtacttggatcttggatagt 416
|| ||||||| ||| || |||||||| |||||||
Sbjct: 398 tcaatgttgctttgatatttggatctcggatagt 431
>gb|BQ467642.1|BQ467642 HS04G18r HS Hordeum vulgare subsp. vulgare cDNA clone HS04G18
5-PRIME, mRNA sequence
Length = 319
Score = 63.9 bits (32), Expect = 1e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 965 cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgc 1024
||||||||||| ||||| |||| ||| ||| ||| ||||| ||||| |||||||||||
Sbjct: 273 cccctggaggtggacggggacggcctttccgtgtgtttctccagcgcctccttgatgcgg 214
Query: 1025 ttccggtccatc 1036
||||||||||||
Sbjct: 213 ttccggtccatc 202
>gb|AW982908.2|AW982908 HVSMEg0004I13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004I13f, mRNA sequence
Length = 554
Score = 61.9 bits (31), Expect = 4e-008
Identities = 94/115 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||| ||||||||||||||||| || ||| | || || ||||| ||
Sbjct: 411 tctaaaatgagatcaagagcataatcataatatggaacttgactgctaagcccacaaaga 352
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctc 797
|| || ||||| || || || |||||||||| ||||| ||||| ||||| ||||
Sbjct: 351 ttgaagtcatcttgaatgtaatcatcatcgacttcacagaagaactcattccctc 297
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 104 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 60
>gb|AV927744.1|AV927744 AV927744 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3h20 3', mRNA sequence
Length = 607
Score = 61.9 bits (31), Expect = 4e-008
Identities = 142/179 (79%)
Strand = Plus / Plus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||| || ||||| ||||||||||| || || |||| ||| ||||||||| ||
Sbjct: 396 tcttcgcacttaggacagtatatcttcactgtactagatcggtgaatatctgattgtcca 455
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttc 541
||| ||||| || || |||||||| || || | || |||| |||||||||||||||
Sbjct: 456 attggtaggcatggttgtccacagcaataaacacgtggacatcgtccaaagtcgtagttc 515
Query: 542 ttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaat 600
||| | ||||||| ||| ||||| | || || ||||| | ||||||||||||||||||
Sbjct: 516 ttgtatttctccagcatagcagccaaccctttactggtcagaatgtatcgtgcatgaat 574
>gb|BM816745.1|BM816745 HB02D10_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB02D10_T3.ab1 similar to Protein kinase,, mRNA sequence
Length = 848
Score = 61.9 bits (31), Expect = 4e-008
Identities = 142/179 (79%)
Strand = Plus / Minus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||| || ||||| ||||||||||| || || |||| ||| ||||||||| ||
Sbjct: 533 tcttcgcacttaggacagtatatcttcactgtactagatcggtgaatatctgattgtcca 474
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttc 541
||| ||||| || || |||||||| || || | || |||| |||||||||||||||
Sbjct: 473 attggtaggcatggttgtccacagcaataaacacgtggacatcgtccaaagtcgtagttc 414
Query: 542 ttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaat 600
||| | ||||||| ||| ||||| | || || ||||| | ||||||||||||||||||
Sbjct: 413 ttgtatttctccagcatagcagccaaccctttactggtcagaatgtatcgtgcatgaat 355
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 184 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 140
>gb|BF629961.2|BF629961 HVSMEb0007H14f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0007H14f, mRNA sequence
Length = 500
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 219 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 175
>gb|BE194657.3|BE194657 HVSMEh0086G10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0086G10f, mRNA sequence
Length = 849
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 125 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 81
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatg 586
||||||| |||||||||| | ||||||| ||| ||||| | || || ||||| | ||||
Sbjct: 369 ccaaagtagtagttcttgtatttctccagcatagcagccaaccctttactggtcagaatg 310
Query: 587 tatcgtgcatgaat 600
||||||||||||||
Sbjct: 309 tatcgtgcatgaat 296
>gb|AV923038.1|AV923038 AV923038 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd3h20 5', mRNA sequence
Length = 492
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 232 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 188
>gb|AV931983.1|AV931983 AV931983 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal0a11 5', mRNA sequence
Length = 483
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 222 tctccaggtgcttatcgagcgcttcgctgatgcgcttccggtcca 178
>gb|BF265820.1|BF265820 HV_CEa0013G19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G19f, mRNA sequence
Length = 771
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 689 atgagatcaagtgcataatcataatatgg 717
||||||||||| |||||||||||||||||
Sbjct: 433 atgagatcaagagcataatcataatatgg 405
Score = 42.1 bits (21), Expect = 0.040
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
|||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 132 tctccaggtgctgatcgagcgcttcgctgatgagcttccggtcca 88
>gb|BG414493.2|BG414493 HVSMEk0002K22f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0002K22f, mRNA sequence
Length = 903
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtcca 1034
||||||||||||| ||||||| || ||||||||||||||||||
Sbjct: 212 tctccaggtgcttatcgagcggttcggtgatgcgcttccggtcca 168
>gb|BQ464988.1|BQ464988 HU02F10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02F10
5-PRIME, mRNA sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 527 ccaaagtcgtagttcttgaacttctccaacattgc 561
|||||||| |||||||||||||||||| ||||||
Sbjct: 428 ccaaagtcacagttcttgaacttctccagcattgc 394
>gb|CV061534.1|CV061534 BNEL6A6 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL6A6 5' similar to Unknown Function, mRNA
sequence
Length = 231
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 994 caggtgcttctcgagcgcgtccttgatgcgcttccggtccat 1035
||||||| | || |||||||| ||||||||||| ||||||||
Sbjct: 168 caggtgcctgtctagcgcgtcgttgatgcgcttgcggtccat 127
>gb|CV064131.1|CV064131 BNEL98d2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL98d2 5' similar to Unknown Function, mRNA
sequence
Length = 231
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 994 caggtgcttctcgagcgcgtccttgatgcgcttccggtccat 1035
||||||| | || |||||||| ||||||||||| ||||||||
Sbjct: 168 caggtgcctgtctagcgcgtcgttgatgcgcttgcggtccat 127
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,696
Number of Sequences: 312970
Number of extensions: 109696
Number of successful extensions: 35348
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35223
Number of HSP's gapped (non-prelim): 112
length of query: 1153
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1134
effective length of database: 169,188,109
effective search space: 191859315606
effective search space used: 191859315606
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)