BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131572.2.3
         (1521 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL504343.1|AL504343  AL504343 Hordeum vulgare Barke roots...    62   6e-008
gb|BF631324.2|BF631324  HVSMEb0015J20f Hordeum vulgare seedl...    62   6e-008
gb|BF254378.2|BF254378  HVSMEf0003N03f Hordeum vulgare seedl...    62   6e-008
gb|BF255022.2|BF255022  HVSMEf0005K23f Hordeum vulgare seedl...    62   6e-008
gb|BF256773.2|BF256773  HVSMEf0010P15f Hordeum vulgare seedl...    62   6e-008
gb|BF259028.2|BF259028  HVSMEf0017H05f Hordeum vulgare seedl...    62   6e-008
gb|BF260521.2|BF260521  HVSMEf0022D17f Hordeum vulgare seedl...    62   6e-008
gb|BF258405.3|BF258405  HVSMEf0015K05f Hordeum vulgare seedl...    62   6e-008
gb|AV924347.1|AV924347  AV924347 K. Sato unpublished cDNA li...    62   6e-008
gb|AV925792.1|AV925792  AV925792 K. Sato unpublished cDNA li...    62   6e-008
gb|BJ468872.1|BJ468872  BJ468872 K. Sato unpublished cDNA li...    62   6e-008
gb|BG300362.1|BG300362  HVSMEb0016B12f Hordeum vulgare seedl...    54   1e-005
gb|BF258585.2|BF258585  HVSMEf0016C04f Hordeum vulgare seedl...    54   1e-005
gb|BM376133.1|BM376133  EBma01_SQ002_H07_R maternal, 4 DPA, ...    52   6e-005
gb|BF257368.2|BF257368  HVSMEf0012L06f Hordeum vulgare seedl...    50   2e-004
gb|BF257748.2|BF257748  HVSMEf0013M04f Hordeum vulgare seedl...    50   2e-004
gb|BF260349.2|BF260349  HVSMEf0021M05f Hordeum vulgare seedl...    50   2e-004
gb|BI956453.1|BI956453  HVSMEn0003H10f Hordeum vulgare rachi...    50   2e-004
gb|BF259024.3|BF259024  HVSMEf0017H01f Hordeum vulgare seedl...    50   2e-004
gb|BM928834.1|BM928834  LP10007 Lemma/palea-enriched cDNA li...    50   2e-004
gb|BM928858.1|BM928858  LP20059 Lemma/palea-enriched cDNA li...    50   2e-004
gb|BQ134683.1|BQ134683  LP30159 Lemma/palea-enriched cDNA li...    50   2e-004
gb|BM376088.2|BM376088  EBma01_SQ002_F01_R maternal, 4 DPA, ...    50   2e-004
gb|BM371381.2|BM371381  EBma08_SQ002_I05_R maternal, 28 DPA,...    50   2e-004
gb|BM371382.2|BM371382  EBma08_SQ002_I06_R maternal, 28 DPA,...    50   2e-004
gb|BM371429.2|BM371429  EBma08_SQ002_L04_R maternal, 28 DPA,...    50   2e-004
gb|BQ768678.1|BQ768678  EBro08_SQ012_J09_R root, 3 week, dro...    50   2e-004
gb|CB882435.1|CB882435  HL01N17w HL Hordeum vulgare subsp. v...    50   2e-004
gb|AL450982.1|AL450982  AL450982 Hordeum vulgare Barke etiol...    48   9e-004
gb|BF630065.2|BF630065  HVSMEb0007N10f Hordeum vulgare seedl...    48   9e-004
gb|BF253643.2|BF253643  HVSMEf0001L12f Hordeum vulgare seedl...    48   9e-004
gb|BF254051.2|BF254051  HVSMEf0002N23f Hordeum vulgare seedl...    48   9e-004
gb|BF254372.2|BF254372  HVSMEf0003M21f Hordeum vulgare seedl...    48   9e-004
gb|BF620538.3|BF620538  HVSMEc0020C24f Hordeum vulgare seedl...    48   9e-004
gb|AV925298.1|AV925298  AV925298 K. Sato unpublished cDNA li...    48   9e-004
gb|CB876850.1|CB876850  HP02J21T HP Hordeum vulgare subsp. v...    48   9e-004
gb|AL450686.1|AL450686  AL450686 Hordeum vulgare Barke etiol...    46   0.003
gb|BF258733.1|BF258733  HVSMEf0016I14f Hordeum vulgare seedl...    46   0.003
gb|BF258007.2|BF258007  HVSMEf0014H17f Hordeum vulgare seedl...    46   0.003
gb|BM371350.1|BM371350  EBma08_SQ002_G09_R maternal, 28 DPA,...    46   0.003
gb|BM371364.1|BM371364  EBma08_SQ002_H03_R maternal, 28 DPA,...    46   0.003
gb|BM371365.1|BM371365  EBma08_SQ002_H04_R maternal, 28 DPA,...    46   0.003
gb|BM371395.1|BM371395  EBma08_SQ002_J02_R maternal, 28 DPA,...    46   0.003
gb|BM371412.1|BM371412  EBma08_SQ002_K03_R maternal, 28 DPA,...    46   0.003
gb|BM371462.1|BM371462  EBma08_SQ002_N04_R maternal, 28 DPA,...    46   0.003
gb|BM376006.1|BM376006  EBma01_SQ002_B01_R maternal, 4 DPA, ...    46   0.003
gb|BM376095.1|BM376095  EBma01_SQ002_F10_R maternal, 4 DPA, ...    46   0.003
gb|BM376112.1|BM376112  EBma01_SQ002_G07_R maternal, 4 DPA, ...    46   0.003
gb|AV918077.1|AV918077  AV918077 K. Sato unpublished cDNA li...    46   0.003
gb|AV918703.1|AV918703  AV918703 K. Sato unpublished cDNA li...    46   0.003
gb|AV918926.1|AV918926  AV918926 K. Sato unpublished cDNA li...    46   0.003
gb|AV921351.1|AV921351  AV921351 K. Sato unpublished cDNA li...    46   0.003
gb|BJ468058.1|BJ468058  BJ468058 K. Sato unpublished cDNA li...    46   0.003
gb|BJ468335.1|BJ468335  BJ468335 K. Sato unpublished cDNA li...    46   0.003
gb|BQ294526.1|BQ294526  LP10283 Lemma/palea-enriched cDNA li...    46   0.003
gb|BM376096.2|BM376096  EBma01_SQ002_F11_R maternal, 4 DPA, ...    46   0.003
gb|BM376199.2|BM376199  EBma01_SQ002_K09_R maternal, 4 DPA, ...    46   0.003
gb|BM376260.2|BM376260  EBma01_SQ002_N09_R maternal, 4 DPA, ...    46   0.003
gb|BM376261.2|BM376261  EBma01_SQ002_N10_R maternal, 4 DPA, ...    46   0.003
gb|BM376262.2|BM376262  EBma01_SQ002_N11_R maternal, 4 DPA, ...    46   0.003
gb|BQ758127.1|BQ758127  EBma01_SQ002_L08_R maternal, 4 DPA, ...    46   0.003
gb|CD663222.1|CD663222  UCRHV18_04db05_b1 Drought-stressed D...    46   0.003
gb|BI947519.1|BI947519  HVSMEl0005M02f Hordeum vulgare spike...    44   0.013
dbj|AB009308.2|  Hordeum vulgare HvPIP1;3 mRNA, complete cds       44   0.013
gb|BF260951.2|BF260951  HVSMEf0023F23f Hordeum vulgare seedl...    42   0.053
gb|BM376094.2|BM376094  EBma01_SQ002_F09_R maternal, 4 DPA, ...    42   0.053
gb|AL500356.1|AL500356  AL500356 Hordeum vulgare Barke etiol...    40   0.21 
gb|BE455906.2|BE455906  HVSMEg0017F10f Hordeum vulgare pre-a...    40   0.21 
gb|AV927324.1|AV927324  AV927324 K. Sato unpublished cDNA li...    40   0.21 
gb|AV927543.1|AV927543  AV927543 K. Sato unpublished cDNA li...    40   0.21 
gb|AV928022.1|AV928022  AV928022 K. Sato unpublished cDNA li...    40   0.21 
gb|AV930320.1|AV930320  AV930320 K. Sato unpublished cDNA li...    40   0.21 
gb|AV930495.1|AV930495  AV930495 K. Sato unpublished cDNA li...    40   0.21 
gb|AV930527.1|AV930527  AV930527 K. Sato unpublished cDNA li...    40   0.21 
gb|AV931697.1|AV931697  AV931697 K. Sato unpublished cDNA li...    40   0.21 
gb|AV931831.1|AV931831  AV931831 K. Sato unpublished cDNA li...    40   0.21 
gb|BQ459285.1|BQ459285  HA01K08r HA Hordeum vulgare subsp. v...    40   0.21 
gb|BM928833.1|BM928833  LP10006 Lemma/palea-enriched cDNA li...    40   0.21 
gb|BM928843.1|BM928843  LP10030 Lemma/palea-enriched cDNA li...    40   0.21 
gb|BQ134670.1|BQ134670  LP30108 Lemma/palea-enriched cDNA li...    40   0.21 
gb|BU983138.1|BU983138  HA28K21r HA Hordeum vulgare subsp. v...    40   0.21 
gb|CB879889.1|CB879889  HP07G10T HP Hordeum vulgare subsp. v...    40   0.21 
gb|CD662211.1|CD662211  UCRHV18_01af07_b1 Drought-stressed D...    40   0.21 
gb|CD662527.1|CD662527  UCRHV18_02ba04_b1 Drought-stressed D...    40   0.21 
gb|CD663190.1|CD663190  UCRHV18_04cf12_b1 Drought-stressed D...    40   0.21 
gb|CD240764.1|CD240764  LP30021 Lemma/palea-enriched cDNA li...    40   0.21 
>gb|AL504343.1|AL504343 AL504343 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
            cDNA clone HW04P19V 5', mRNA sequence
          Length = 660

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 163  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 104

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 103  gaggctg 97
>gb|BF631324.2|BF631324 HVSMEb0015J20f Hordeum vulgare seedling shoot EST library HVcDNA0002
            (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
            clone HVSMEb0015J20f, mRNA sequence
          Length = 832

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 154  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 95

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 94   gaggctg 88
>gb|BF254378.2|BF254378 HVSMEf0003N03f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0003N03f, mRNA sequence
          Length = 876

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 155  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 96

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 95   gaggctg 89
>gb|BF255022.2|BF255022 HVSMEf0005K23f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0005K23f, mRNA sequence
          Length = 595

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 163  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 104

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 103  gaggctg 97
>gb|BF256773.2|BF256773 HVSMEf0010P15f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0010P15f, mRNA sequence
          Length = 850

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 151  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 92

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 91   gaggctg 85
>gb|BF259028.2|BF259028 HVSMEf0017H05f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0017H05f, mRNA sequence
          Length = 791

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 172  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 113

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 112  gaggctg 106
>gb|BF260521.2|BF260521 HVSMEf0022D17f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0022D17f, mRNA sequence
          Length = 805

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 151  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 92

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 91   gaggctg 85

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 773 gggaaggctttgacaatggccctggc 798
           |||||||||||||| |||||||||||
Sbjct: 675 gggaaggctttgacgatggccctggc 650
>gb|BF258405.3|BF258405 HVSMEf0015K05f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0015K05f, mRNA sequence
          Length = 894

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 167  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 108

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 107  gaggctg 101
>gb|AV924347.1|AV924347 AV924347 K. Sato unpublished cDNA library, cv. Haruna Nijo second
            leaf stage seedling leaves Hordeum vulgare subsp. vulgare
            cDNA clone basd14d20 5', mRNA sequence
          Length = 564

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 135  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 76

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 75   gaggctg 69
>gb|AV925792.1|AV925792 AV925792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
            leaf stage seedling leaves Hordeum vulgare subsp. vulgare
            cDNA clone basd25n22 5', mRNA sequence
          Length = 451

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 161  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 102

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 101  gaggctg 95
>gb|BJ468872.1|BJ468872 BJ468872 K. Sato unpublished cDNA library, cv. Haruna Nijo second
            leaf stage seedling leaves Hordeum vulgare subsp. vulgare
            cDNA clone basd27k15 5', mRNA sequence
          Length = 541

 Score = 61.9 bits (31), Expect = 6e-008
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||||| |||| || || ||||||||||| 
Sbjct: 153  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 94

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 93   gaggctg 87
>gb|BG300362.1|BG300362 HVSMEb0016B12f Hordeum vulgare seedling shoot EST library HVcDNA0002
            (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
            clone HVSMEb0016B12f, mRNA sequence
          Length = 625

 Score = 54.0 bits (27), Expect = 1e-005
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||| | |||| || || ||||||||||| 
Sbjct: 178  gatcgccgtcgggatgccgagctcgatggcgcacatgagtgccatggacgtgaggtaggt 119

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 118  gaggctg 112
>gb|BF258585.2|BF258585 HVSMEf0016C04f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0016C04f, mRNA sequence
          Length = 876

 Score = 54.0 bits (27), Expect = 1e-005
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagg 1364
            ||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 182  gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtagg 124
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma01_SQ002_H07 5', mRNA sequence
          Length = 422

 Score = 52.0 bits (26), Expect = 6e-005
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 1496 cgtacctgcccgggcggccgctcgaa 1521
            ||||||||||||||||||||||||||
Sbjct: 340  cgtacctgcccgggcggccgctcgaa 365
>gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0012L06f, mRNA sequence
          Length = 539

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 317  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 261
>gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0013M04f, mRNA sequence
          Length = 491

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 314  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 258

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1299 ggcggtagatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtga 1358
            |||||| ||| ||||| |||| ||| || || |||||||| |  || |||| ||||||||
Sbjct: 201  ggcggtggatggccgtggggacgccgaggtcgacggcgcagcggagcgacatgggcgtga 142

                          
Query: 1359 ggtaggagaggctg 1372
            ||||| ||||||||
Sbjct: 141  ggtagcagaggctg 128
>gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0021M05f, mRNA sequence
          Length = 543

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 303  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 247
>gb|BI956453.1|BI956453 HVSMEn0003H10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
            Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0003H10f,
            mRNA sequence
          Length = 657

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 60   ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 4
>gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0017H01f, mRNA sequence
          Length = 804

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 318  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 262
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
            kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
            mRNA sequence
          Length = 420

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 29   gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
            kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
            similar to Rubisco small sub-unit gene, mRNA sequence
          Length = 491

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 241  gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of kernel
            Hordeum vulgare subsp. vulgare cDNA clone 3-159 similar
            to putative ABC transporter, mRNA sequence
          Length = 339

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 262  gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma01_SQ002_F01 5', mRNA sequence
          Length = 256

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 103  gtacctgcccgggcggccgctcgaa 79
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_I05 5', mRNA sequence
          Length = 581

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 500  gtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_I06 5', mRNA sequence
          Length = 494

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 414  gtacctgcccgggcggccgctcgaa 438
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_L04 5', mRNA sequence
          Length = 454

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||||
Sbjct: 103  gtacctgcccgggcggccgctcgaa 79
>gb|BQ768678.1|BQ768678 EBro08_SQ012_J09_R root, 3 week, drought-stressed, cv Optic, EBro08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBro08_SQ012_J09 5', mRNA sequence
          Length = 484

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 166  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 110
>gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01N17
            3-PRIME, mRNA sequence
          Length = 553

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
            |||||| ||||||| || ||||||  | ||||||||||||  |||||||||||||||
Sbjct: 322  ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 266
>gb|AL450982.1|AL450982 AL450982 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
            subsp. vulgare cDNA clone HK05O23u 5', mRNA sequence
          Length = 666

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
            ||||| ||||||||||| ||||  ||||||||||| |||| || || |||||||| | | 
Sbjct: 163  atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 104

                            
Query: 1367 aggctgagccgccata 1382
            |||||| | |||||||
Sbjct: 103  aggctgtggcgccata 88
>gb|BF630065.2|BF630065 HVSMEb0007N10f Hordeum vulgare seedling shoot EST library
           HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEb0007N10f, mRNA sequence
          Length = 501

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
           ||||||||||| |||||||||| |||||||||
Sbjct: 155 ctgaaccctgccttggtgaagatctcgctcca 124
>gb|BF253643.2|BF253643 HVSMEf0001L12f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0001L12f, mRNA sequence
          Length = 580

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
           ||||||||||| |||||||||| |||||||||
Sbjct: 264 ctgaaccctgccttggtgaagatctcgctcca 233
>gb|BF254051.2|BF254051 HVSMEf0002N23f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0002N23f, mRNA sequence
          Length = 523

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
            ||||||||| |||||||| ||||| | ||||||| | |||| || |  ||||||||||| 
Sbjct: 168  gatcgccgtggggatgccgagctcgatggcgcacttgagtgccatgnacgtgaggtaggt 109

                   
Query: 1366 gaggctg 1372
            |||||||
Sbjct: 108  gaggctg 102
>gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0003M21f, mRNA sequence
          Length = 526

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
           ||||||||||| |||||||||| |||||||||
Sbjct: 370 ctgaaccctgccttggtgaagatctcgctcca 339
>gb|BF620538.3|BF620538 HVSMEc0020C24f Hordeum vulgare seedling shoot EST library HVcDNA0003
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEc0020C24f, mRNA sequence
          Length = 673

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
            ||||| ||||||||||| ||||  ||||||||||| |||| || || |||||||| | | 
Sbjct: 138  atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 79

                            
Query: 1367 aggctgagccgccata 1382
            |||||| | |||||||
Sbjct: 78   aggctgtggcgccata 63
>gb|AV925298.1|AV925298 AV925298 K. Sato unpublished cDNA library, cv. Haruna Nijo second
            leaf stage seedling leaves Hordeum vulgare subsp. vulgare
            cDNA clone basd22j14 5', mRNA sequence
          Length = 595

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
            ||||| ||||||||||| ||||  ||||||||||| |||| || || |||||||| | | 
Sbjct: 121  atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 62

                            
Query: 1367 aggctgagccgccata 1382
            |||||| | |||||||
Sbjct: 61   aggctgtggcgccata 46
>gb|CB876850.1|CB876850 HP02J21T HP Hordeum vulgare subsp. vulgare cDNA clone HP02J21
            5-PRIME, mRNA sequence
          Length = 564

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
            ||||| ||||||||||| ||||  ||||||||||| |||| || || |||||||| | | 
Sbjct: 170  atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 111

                            
Query: 1367 aggctgagccgccata 1382
            |||||| | |||||||
Sbjct: 110  aggctgtggcgccata 95
>gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
           subsp. vulgare cDNA clone HK03M11u 5', mRNA sequence
          Length = 540

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 404 tcgctgaaccctgctttggtgaa 426
           |||||||||||||||||||||||
Sbjct: 271 tcgctgaaccctgctttggtgaa 293
>gb|BF258733.1|BF258733 HVSMEf0016I14f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0016I14f, mRNA sequence
          Length = 964

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 628 gtggtgcagcacaagctttagca 650
           |||||||||||||||||||||||
Sbjct: 544 gtggtgcagcacaagctttagca 522
>gb|BF258007.2|BF258007 HVSMEf0014H17f Hordeum vulgare seedling root EST library HVcDNA0007
            (Etiolated and unstressed) Hordeum vulgare subsp. vulgare
            cDNA clone HVSMEf0014H17f, mRNA sequence
          Length = 571

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagg 1364
            ||||||||| || ||||| ||||||| ||||||| | |||| || || |||||||||||
Sbjct: 165  gatcgccgtcggtatgccgagctccatggcgcacgtgagtgccatggacgtgaggtagg 107
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_G09 5', mRNA sequence
          Length = 392

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 100  acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_H03 5', mRNA sequence
          Length = 392

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 100  acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_H04 5', mRNA sequence
          Length = 393

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 101  acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_J02 5', mRNA sequence
          Length = 392

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 100  acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_K03 5', mRNA sequence
          Length = 393

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 101  acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma08_SQ002_N04 5', mRNA sequence
          Length = 393

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 101  acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma01_SQ002_B01 5', mRNA sequence
          Length = 393

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 101  acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma01_SQ002_F10 5', mRNA sequence
          Length = 393

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 101  acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
            Hordeum vulgare subsp. vulgare cDNA clone
            EBma01_SQ002_G07 5', mRNA sequence
          Length = 392

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1499 acctgcccgggcggccgctcgaa 1521
            |||||||||||||||||||||||
Sbjct: 100  acctgcccgggcggccgctcgaa 78
>gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags17l08 3', mRNA sequence
          Length = 640

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 404 tcgctgaaccctgctttggtgaa 426
           |||||||||||||||||||||||
Sbjct: 261 tcgctgaaccctgctttggtgaa 283
>gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags21p04 3', mRNA sequence
          Length = 654

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 404 tcgctgaaccctgctttggtgaa 426
           |||||||||||||||||||||||
Sbjct: 262 tcgctgaaccctgctttggtgaa 284
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,279
Number of Sequences: 312970
Number of extensions: 162279
Number of successful extensions: 47913
Number of sequences better than  0.5: 86
Number of HSP's better than  0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47745
Number of HSP's gapped (non-prelim): 168
length of query: 1521
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1502
effective length of database: 169,188,109
effective search space: 254120539718
effective search space used: 254120539718
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)