BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL504343.1|AL504343 AL504343 Hordeum vulgare Barke roots... 62 6e-008
gb|BF631324.2|BF631324 HVSMEb0015J20f Hordeum vulgare seedl... 62 6e-008
gb|BF254378.2|BF254378 HVSMEf0003N03f Hordeum vulgare seedl... 62 6e-008
gb|BF255022.2|BF255022 HVSMEf0005K23f Hordeum vulgare seedl... 62 6e-008
gb|BF256773.2|BF256773 HVSMEf0010P15f Hordeum vulgare seedl... 62 6e-008
gb|BF259028.2|BF259028 HVSMEf0017H05f Hordeum vulgare seedl... 62 6e-008
gb|BF260521.2|BF260521 HVSMEf0022D17f Hordeum vulgare seedl... 62 6e-008
gb|BF258405.3|BF258405 HVSMEf0015K05f Hordeum vulgare seedl... 62 6e-008
gb|AV924347.1|AV924347 AV924347 K. Sato unpublished cDNA li... 62 6e-008
gb|AV925792.1|AV925792 AV925792 K. Sato unpublished cDNA li... 62 6e-008
gb|BJ468872.1|BJ468872 BJ468872 K. Sato unpublished cDNA li... 62 6e-008
gb|BG300362.1|BG300362 HVSMEb0016B12f Hordeum vulgare seedl... 54 1e-005
gb|BF258585.2|BF258585 HVSMEf0016C04f Hordeum vulgare seedl... 54 1e-005
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 52 6e-005
gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedl... 50 2e-004
gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedl... 50 2e-004
gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedl... 50 2e-004
gb|BI956453.1|BI956453 HVSMEn0003H10f Hordeum vulgare rachi... 50 2e-004
gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedl... 50 2e-004
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 2e-004
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 2e-004
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 50 2e-004
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 50 2e-004
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 2e-004
gb|BQ768678.1|BQ768678 EBro08_SQ012_J09_R root, 3 week, dro... 50 2e-004
gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. v... 50 2e-004
gb|AL450982.1|AL450982 AL450982 Hordeum vulgare Barke etiol... 48 9e-004
gb|BF630065.2|BF630065 HVSMEb0007N10f Hordeum vulgare seedl... 48 9e-004
gb|BF253643.2|BF253643 HVSMEf0001L12f Hordeum vulgare seedl... 48 9e-004
gb|BF254051.2|BF254051 HVSMEf0002N23f Hordeum vulgare seedl... 48 9e-004
gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedl... 48 9e-004
gb|BF620538.3|BF620538 HVSMEc0020C24f Hordeum vulgare seedl... 48 9e-004
gb|AV925298.1|AV925298 AV925298 K. Sato unpublished cDNA li... 48 9e-004
gb|CB876850.1|CB876850 HP02J21T HP Hordeum vulgare subsp. v... 48 9e-004
gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiol... 46 0.003
gb|BF258733.1|BF258733 HVSMEf0016I14f Hordeum vulgare seedl... 46 0.003
gb|BF258007.2|BF258007 HVSMEf0014H17f Hordeum vulgare seedl... 46 0.003
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 0.003
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 0.003
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 0.003
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 0.003
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 0.003
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 0.003
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 0.003
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 0.003
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 0.003
gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA li... 46 0.003
gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA li... 46 0.003
gb|AV918926.1|AV918926 AV918926 K. Sato unpublished cDNA li... 46 0.003
gb|AV921351.1|AV921351 AV921351 K. Sato unpublished cDNA li... 46 0.003
gb|BJ468058.1|BJ468058 BJ468058 K. Sato unpublished cDNA li... 46 0.003
gb|BJ468335.1|BJ468335 BJ468335 K. Sato unpublished cDNA li... 46 0.003
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 0.003
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 0.003
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 0.003
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 0.003
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 0.003
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 0.003
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 0.003
gb|CD663222.1|CD663222 UCRHV18_04db05_b1 Drought-stressed D... 46 0.003
gb|BI947519.1|BI947519 HVSMEl0005M02f Hordeum vulgare spike... 44 0.013
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.013
gb|BF260951.2|BF260951 HVSMEf0023F23f Hordeum vulgare seedl... 42 0.053
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.053
gb|AL500356.1|AL500356 AL500356 Hordeum vulgare Barke etiol... 40 0.21
gb|BE455906.2|BE455906 HVSMEg0017F10f Hordeum vulgare pre-a... 40 0.21
gb|AV927324.1|AV927324 AV927324 K. Sato unpublished cDNA li... 40 0.21
gb|AV927543.1|AV927543 AV927543 K. Sato unpublished cDNA li... 40 0.21
gb|AV928022.1|AV928022 AV928022 K. Sato unpublished cDNA li... 40 0.21
gb|AV930320.1|AV930320 AV930320 K. Sato unpublished cDNA li... 40 0.21
gb|AV930495.1|AV930495 AV930495 K. Sato unpublished cDNA li... 40 0.21
gb|AV930527.1|AV930527 AV930527 K. Sato unpublished cDNA li... 40 0.21
gb|AV931697.1|AV931697 AV931697 K. Sato unpublished cDNA li... 40 0.21
gb|AV931831.1|AV931831 AV931831 K. Sato unpublished cDNA li... 40 0.21
gb|BQ459285.1|BQ459285 HA01K08r HA Hordeum vulgare subsp. v... 40 0.21
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.21
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.21
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.21
gb|BU983138.1|BU983138 HA28K21r HA Hordeum vulgare subsp. v... 40 0.21
gb|CB879889.1|CB879889 HP07G10T HP Hordeum vulgare subsp. v... 40 0.21
gb|CD662211.1|CD662211 UCRHV18_01af07_b1 Drought-stressed D... 40 0.21
gb|CD662527.1|CD662527 UCRHV18_02ba04_b1 Drought-stressed D... 40 0.21
gb|CD663190.1|CD663190 UCRHV18_04cf12_b1 Drought-stressed D... 40 0.21
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.21
>gb|AL504343.1|AL504343 AL504343 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04P19V 5', mRNA sequence
Length = 660
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 163 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 104
Query: 1366 gaggctg 1372
|||||||
Sbjct: 103 gaggctg 97
>gb|BF631324.2|BF631324 HVSMEb0015J20f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0015J20f, mRNA sequence
Length = 832
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 154 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 95
Query: 1366 gaggctg 1372
|||||||
Sbjct: 94 gaggctg 88
>gb|BF254378.2|BF254378 HVSMEf0003N03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003N03f, mRNA sequence
Length = 876
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 155 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 96
Query: 1366 gaggctg 1372
|||||||
Sbjct: 95 gaggctg 89
>gb|BF255022.2|BF255022 HVSMEf0005K23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0005K23f, mRNA sequence
Length = 595
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 163 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 104
Query: 1366 gaggctg 1372
|||||||
Sbjct: 103 gaggctg 97
>gb|BF256773.2|BF256773 HVSMEf0010P15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0010P15f, mRNA sequence
Length = 850
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 151 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 92
Query: 1366 gaggctg 1372
|||||||
Sbjct: 91 gaggctg 85
>gb|BF259028.2|BF259028 HVSMEf0017H05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0017H05f, mRNA sequence
Length = 791
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 172 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 113
Query: 1366 gaggctg 1372
|||||||
Sbjct: 112 gaggctg 106
>gb|BF260521.2|BF260521 HVSMEf0022D17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0022D17f, mRNA sequence
Length = 805
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 151 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 92
Query: 1366 gaggctg 1372
|||||||
Sbjct: 91 gaggctg 85
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 773 gggaaggctttgacaatggccctggc 798
|||||||||||||| |||||||||||
Sbjct: 675 gggaaggctttgacgatggccctggc 650
>gb|BF258405.3|BF258405 HVSMEf0015K05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0015K05f, mRNA sequence
Length = 894
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 167 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 108
Query: 1366 gaggctg 1372
|||||||
Sbjct: 107 gaggctg 101
>gb|AV924347.1|AV924347 AV924347 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd14d20 5', mRNA sequence
Length = 564
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 135 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 76
Query: 1366 gaggctg 1372
|||||||
Sbjct: 75 gaggctg 69
>gb|AV925792.1|AV925792 AV925792 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd25n22 5', mRNA sequence
Length = 451
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 161 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 102
Query: 1366 gaggctg 1372
|||||||
Sbjct: 101 gaggctg 95
>gb|BJ468872.1|BJ468872 BJ468872 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd27k15 5', mRNA sequence
Length = 541
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 153 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtaggt 94
Query: 1366 gaggctg 1372
|||||||
Sbjct: 93 gaggctg 87
>gb|BG300362.1|BG300362 HVSMEb0016B12f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0016B12f, mRNA sequence
Length = 625
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||| | |||| || || |||||||||||
Sbjct: 178 gatcgccgtcgggatgccgagctcgatggcgcacatgagtgccatggacgtgaggtaggt 119
Query: 1366 gaggctg 1372
|||||||
Sbjct: 118 gaggctg 112
>gb|BF258585.2|BF258585 HVSMEf0016C04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0016C04f, mRNA sequence
Length = 876
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagg 1364
||||||||| |||||||| ||||| | ||||||||| |||| || || |||||||||||
Sbjct: 182 gatcgccgtcgggatgccgagctcgatggcgcacctgagtgccatggacgtgaggtagg 124
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1496 cgtacctgcccgggcggccgctcgaa 1521
||||||||||||||||||||||||||
Sbjct: 340 cgtacctgcccgggcggccgctcgaa 365
>gb|BF257368.2|BF257368 HVSMEf0012L06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0012L06f, mRNA sequence
Length = 539
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 317 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 261
>gb|BF257748.2|BF257748 HVSMEf0013M04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0013M04f, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 314 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 258
Score = 44.1 bits (22), Expect = 0.013
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 1299 ggcggtagatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtga 1358
|||||| ||| ||||| |||| ||| || || |||||||| | || |||| ||||||||
Sbjct: 201 ggcggtggatggccgtggggacgccgaggtcgacggcgcagcggagcgacatgggcgtga 142
Query: 1359 ggtaggagaggctg 1372
||||| ||||||||
Sbjct: 141 ggtagcagaggctg 128
>gb|BF260349.2|BF260349 HVSMEf0021M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0021M05f, mRNA sequence
Length = 543
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 303 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 247
>gb|BI956453.1|BI956453 HVSMEn0003H10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0003H10f,
mRNA sequence
Length = 657
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 60 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 4
>gb|BF259024.3|BF259024 HVSMEf0017H01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0017H01f, mRNA sequence
Length = 804
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 318 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 262
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of kernel
Hordeum vulgare subsp. vulgare cDNA clone 3-159 similar
to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 500 gtacctgcccgggcggccgctcgaa 524
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 414 gtacctgcccgggcggccgctcgaa 438
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BQ768678.1|BQ768678 EBro08_SQ012_J09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_J09 5', mRNA sequence
Length = 484
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 166 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 110
>gb|CB882435.1|CB882435 HL01N17w HL Hordeum vulgare subsp. vulgare cDNA clone HL01N17
3-PRIME, mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1186 ggtgaacacgcccgacgcggcgaggagccgcagcaggcggcggaggaacggcagctt 1242
|||||| ||||||| || |||||| | |||||||||||| |||||||||||||||
Sbjct: 322 ggtgaagacgcccgccgtggcgagctggcgcagcaggcgggcgaggaacggcagctt 266
>gb|AL450982.1|AL450982 AL450982 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05O23u 5', mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 9e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
||||| ||||||||||| |||| ||||||||||| |||| || || |||||||| | |
Sbjct: 163 atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 104
Query: 1367 aggctgagccgccata 1382
|||||| | |||||||
Sbjct: 103 aggctgtggcgccata 88
>gb|BF630065.2|BF630065 HVSMEb0007N10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007N10f, mRNA sequence
Length = 501
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
||||||||||| |||||||||| |||||||||
Sbjct: 155 ctgaaccctgccttggtgaagatctcgctcca 124
>gb|BF253643.2|BF253643 HVSMEf0001L12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001L12f, mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
||||||||||| |||||||||| |||||||||
Sbjct: 264 ctgaaccctgccttggtgaagatctcgctcca 233
>gb|BF254051.2|BF254051 HVSMEf0002N23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002N23f, mRNA sequence
Length = 523
Score = 48.1 bits (24), Expect = 9e-004
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagga 1365
||||||||| |||||||| ||||| | ||||||| | |||| || | |||||||||||
Sbjct: 168 gatcgccgtggggatgccgagctcgatggcgcacttgagtgccatgnacgtgaggtaggt 109
Query: 1366 gaggctg 1372
|||||||
Sbjct: 108 gaggctg 102
>gb|BF254372.2|BF254372 HVSMEf0003M21f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003M21f, mRNA sequence
Length = 526
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagctcgctcca 438
||||||||||| |||||||||| |||||||||
Sbjct: 370 ctgaaccctgccttggtgaagatctcgctcca 339
>gb|BF620538.3|BF620538 HVSMEc0020C24f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0020C24f, mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 9e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
||||| ||||||||||| |||| ||||||||||| |||| || || |||||||| | |
Sbjct: 138 atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 79
Query: 1367 aggctgagccgccata 1382
|||||| | |||||||
Sbjct: 78 aggctgtggcgccata 63
>gb|AV925298.1|AV925298 AV925298 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22j14 5', mRNA sequence
Length = 595
Score = 48.1 bits (24), Expect = 9e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
||||| ||||||||||| |||| ||||||||||| |||| || || |||||||| | |
Sbjct: 121 atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 62
Query: 1367 aggctgagccgccata 1382
|||||| | |||||||
Sbjct: 61 aggctgtggcgccata 46
>gb|CB876850.1|CB876850 HP02J21T HP Hordeum vulgare subsp. vulgare cDNA clone HP02J21
5-PRIME, mRNA sequence
Length = 564
Score = 48.1 bits (24), Expect = 9e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 1307 atcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtaggag 1366
||||| ||||||||||| |||| ||||||||||| |||| || || |||||||| | |
Sbjct: 170 atcgcagtagggatgccgagctggacggcgcacctgagtgccatggccgtgaggtggcat 111
Query: 1367 aggctgagccgccata 1382
|||||| | |||||||
Sbjct: 110 aggctgtggcgccata 95
>gb|AL450686.1|AL450686 AL450686 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03M11u 5', mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 404 tcgctgaaccctgctttggtgaa 426
|||||||||||||||||||||||
Sbjct: 271 tcgctgaaccctgctttggtgaa 293
>gb|BF258733.1|BF258733 HVSMEf0016I14f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016I14f, mRNA sequence
Length = 964
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 628 gtggtgcagcacaagctttagca 650
|||||||||||||||||||||||
Sbjct: 544 gtggtgcagcacaagctttagca 522
>gb|BF258007.2|BF258007 HVSMEf0014H17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0014H17f, mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1306 gatcgccgtagggatgccaagctccacggcgcacctcagtgacaggggcgtgaggtagg 1364
||||||||| || ||||| ||||||| ||||||| | |||| || || |||||||||||
Sbjct: 165 gatcgccgtcggtatgccgagctccatggcgcacgtgagtgccatggacgtgaggtagg 107
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|AV918077.1|AV918077 AV918077 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17l08 3', mRNA sequence
Length = 640
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 404 tcgctgaaccctgctttggtgaa 426
|||||||||||||||||||||||
Sbjct: 261 tcgctgaaccctgctttggtgaa 283
>gb|AV918703.1|AV918703 AV918703 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21p04 3', mRNA sequence
Length = 654
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 404 tcgctgaaccctgctttggtgaa 426
|||||||||||||||||||||||
Sbjct: 262 tcgctgaaccctgctttggtgaa 284
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,279
Number of Sequences: 312970
Number of extensions: 162279
Number of successful extensions: 47913
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47745
Number of HSP's gapped (non-prelim): 168
length of query: 1521
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1502
effective length of database: 169,188,109
effective search space: 254120539718
effective search space used: 254120539718
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)