BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke devel... 240 9e-062
gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedl... 240 9e-062
gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA li... 240 9e-062
gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA li... 240 9e-062
gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA li... 230 9e-059
gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA li... 230 9e-059
gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. v... 230 9e-059
gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 ... 222 2e-056
gb|CA011608.1|CA011608 HT03A12r HT Hordeum vulgare subsp. v... 206 1e-051
gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA li... 204 5e-051
gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA li... 204 5e-051
gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, n... 198 3e-049
gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. v... 196 1e-048
gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA li... 192 2e-047
gb|BE215014.1|BE215014 HV_CEb0005I17f Hordeum vulgare seedl... 184 5e-045
gb|CA007077.1|CA007077 HU06K19r HU Hordeum vulgare subsp. v... 184 5e-045
gb|BG369084.2|BG369084 HVSMEi0021K17f Hordeum vulgare 20 DA... 167 1e-039
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 165 4e-039
gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. v... 161 7e-038
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 157 1e-036
gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. v... 151 6e-035
gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. v... 147 1e-033
gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. v... 147 1e-033
gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA li... 139 2e-031
gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. v... 137 1e-030
gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. v... 131 6e-029
gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. v... 125 4e-027
gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA li... 123 1e-026
gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA li... 119 2e-025
gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA li... 115 4e-024
gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA li... 115 4e-024
gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA li... 115 4e-024
gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA li... 115 4e-024
gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA li... 115 4e-024
gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow st... 113 1e-023
gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA li... 111 6e-023
gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA li... 103 1e-020
gb|BF264429.3|BF264429 HV_CEa0009G11f Hordeum vulgare seedl... 80 2e-013
gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedl... 80 2e-013
gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA li... 80 2e-013
gb|BI956550.1|BI956550 HVSMEn0004B16f Hordeum vulgare rachi... 78 8e-013
gb|BM444089.1|BM444089 EBem09_SQ004_C03_R embryo, 1 Day ger... 68 8e-010
gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, n... 62 5e-008
gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, red... 62 5e-008
gb|BJ476181.1|BJ476181 BJ476181 K. Sato unpublished cDNA li... 58 7e-007
gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. v... 56 3e-006
gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedl... 54 1e-005
gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedl... 54 1e-005
gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedl... 54 1e-005
gb|BI957946.1|BI957946 HVSMEn0012F23f Hordeum vulgare rachi... 50 2e-004
gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachi... 50 2e-004
gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachi... 50 2e-004
gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachi... 50 2e-004
gb|BM442873.2|BM442873 EBro02_SQ001_K13_R root, 3 week, hyd... 50 2e-004
gb|BM443024.2|BM443024 EBro02_SQ002_D15_R root, 3 week, hyd... 50 2e-004
gb|BI777845.2|BI777845 EBro08_SQ002_E16_R root, 3 week, dro... 50 2e-004
gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hyd... 50 2e-004
gb|BQ763026.1|BQ763026 EBro02_SQ006_N19_R root, 3 week, hyd... 50 2e-004
gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DA... 48 7e-004
gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA li... 48 7e-004
gb|BI948507.1|BI948507 HVSMEl0009O08f Hordeum vulgare spike... 44 0.011
gb|BE214863.2|BE214863 HV_CEb0004O14f Hordeum vulgare seedl... 44 0.011
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 44 0.011
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 44 0.011
gb|BI956546.1|BI956546 HVSMEn0004B08f Hordeum vulgare rachi... 42 0.043
gb|BF263684.3|BF263684 HV_CEa0007G07f Hordeum vulgare seedl... 42 0.043
gb|BF263685.3|BF263685 HV_CEa0007G08f Hordeum vulgare seedl... 42 0.043
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 42 0.043
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 42 0.043
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 42 0.043
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 42 0.043
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 42 0.043
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.043
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 42 0.043
gb|AV836450.1|AV836450 AV836450 K. Sato unpublished cDNA li... 40 0.17
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 40 0.17
gb|AW982313.3|AW982313 HVSMEg0002M22f Hordeum vulgare pre-a... 40 0.17
gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 ... 40 0.17
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.17
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.17
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 40 0.17
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.17
>gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04A23T 5',
mRNA sequence
Length = 619
Score = 240 bits (121), Expect = 9e-062
Identities = 466/581 (80%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 17 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 76
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 77 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 136
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 137 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 196
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 197 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 256
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 257 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 316
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 317 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 376
Query: 434 tcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagac 493
||||||| ||||||| ||||||| | || ||||| || || ||| |||||||
Sbjct: 377 tcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagac 436
Query: 494 tgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaaca 553
|||||||||| |||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct: 437 agctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacg 496
Query: 554 ctgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtt 613
| | || || || ||| |||||| |||||| ||||| ||| |||| |||||| || ||
Sbjct: 497 cgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctatt 556
Query: 614 tgtccgtcattagtatttggacccttgatgcagcctacagt 654
|| ||||| ||| |||| |||||||||||||| |||||
Sbjct: 557 ctaccatcattggtacttggccccttgatgcagccaacagt 597
>gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022F12f, mRNA sequence
Length = 697
Score = 240 bits (121), Expect = 9e-062
Identities = 466/581 (80%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 79 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 138
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 139 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 198
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 199 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 258
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 259 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 318
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 319 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 378
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 379 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 438
Query: 434 tcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagac 493
||||||| ||||||| ||||||| | || ||||| || || ||| |||||||
Sbjct: 439 tcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagac 498
Query: 494 tgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaaca 553
|||||||||| |||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct: 499 agctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacg 558
Query: 554 ctgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtt 613
| | || || || ||| |||||| |||||| ||||| ||| |||| |||||| || ||
Sbjct: 559 cgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctatt 618
Query: 614 tgtccgtcattagtatttggacccttgatgcagcctacagt 654
|| ||||| ||| |||| |||||||||||||| |||||
Sbjct: 619 ctaccatcattggtacttggccccttgatgcagccaacagt 659
>gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 5', mRNA sequence
Length = 662
Score = 240 bits (121), Expect = 9e-062
Identities = 466/581 (80%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 52 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 111
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 112 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 171
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 172 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 231
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 232 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 291
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 292 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 351
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 352 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 411
Query: 434 tcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagac 493
||||||| ||||||| ||||||| | || ||||| || || ||| |||||||
Sbjct: 412 tcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagac 471
Query: 494 tgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaaca 553
|||||||||| |||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct: 472 agctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacg 531
Query: 554 ctgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtt 613
| | || || || ||| |||||| |||||| ||||| ||| |||| |||||| || ||
Sbjct: 532 cgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctatt 591
Query: 614 tgtccgtcattagtatttggacccttgatgcagcctacagt 654
|| ||||| ||| |||| |||||||||||||| |||||
Sbjct: 592 ctaccatcattggtacttggccccttgatgcagccaacagt 632
>gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 5', mRNA sequence
Length = 663
Score = 240 bits (121), Expect = 9e-062
Identities = 466/581 (80%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 70 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 129
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 130 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 189
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 190 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 249
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 250 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 309
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 310 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 369
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 370 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 429
Query: 434 tcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagac 493
||||||| ||||||| ||||||| | || ||||| || || ||| |||||||
Sbjct: 430 tcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagac 489
Query: 494 tgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaaca 553
|||||||||| |||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct: 490 agctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacg 549
Query: 554 ctgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtt 613
| | || || || ||| |||||| |||||| ||||| ||| |||| |||||| || ||
Sbjct: 550 cgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctatt 609
Query: 614 tgtccgtcattagtatttggacccttgatgcagcctacagt 654
|| ||||| ||| |||| |||||||||||||| |||||
Sbjct: 610 ctaccatcattggtacttggccccttgatgcagccaacagt 650
>gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 5', mRNA sequence
Length = 514
Score = 230 bits (116), Expect = 9e-059
Identities = 311/376 (82%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 44 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 103
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 104 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 163
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 164 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 223
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 224 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 283
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 284 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 343
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 344 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 403
Query: 434 tcatgtggagctgtgt 449
||||||| |||||||
Sbjct: 404 tcatgtgctgctgtgt 419
>gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 5', mRNA sequence
Length = 578
Score = 230 bits (116), Expect = 9e-059
Identities = 311/376 (82%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 53 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 112
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 113 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 172
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 173 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 232
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 233 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 292
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 293 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 352
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 353 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 412
Query: 434 tcatgtggagctgtgt 449
||||||| |||||||
Sbjct: 413 tcatgtgctgctgtgt 428
>gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. vulgare cDNA clone HU08J12
5-PRIME, mRNA sequence
Length = 511
Score = 230 bits (116), Expect = 9e-059
Identities = 311/376 (82%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 19 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 78
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 79 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 138
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 139 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 198
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 199 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 258
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 259 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 318
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 319 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 378
Query: 434 tcatgtggagctgtgt 449
||||||| |||||||
Sbjct: 379 tcatgtgctgctgtgt 394
>gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100H17f, mRNA sequence
Length = 505
Score = 222 bits (112), Expect = 2e-056
Identities = 310/376 (82%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 22 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 81
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 82 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 141
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 142 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 201
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 202 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 261
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 262 gtcccttctggcagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 321
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 322 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 381
Query: 434 tcatgtggagctgtgt 449
||||||| |||||||
Sbjct: 382 tcatgtgctgctgtgt 397
>gb|CA011608.1|CA011608 HT03A12r HT Hordeum vulgare subsp. vulgare cDNA clone HT03A12
5-PRIME, mRNA sequence
Length = 371
Score = 206 bits (104), Expect = 1e-051
Identities = 281/340 (82%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 28 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 87
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 88 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 147
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 148 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 207
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 208 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 267
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 268 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 327
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagtta 413
||| |||||||| ||||||||| | |||||||||||||
Sbjct: 328 acactgaatgtgttgaaggcttgcaacgaggcaaaagtta 367
>gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 5', mRNA sequence
Length = 518
Score = 204 bits (103), Expect = 5e-051
Identities = 292/355 (82%)
Strand = Plus / Plus
Query: 95 ggcttcgtcgcgtcggagctggtgaagctcctcctctcccggggccaatacgcggtccgc 154
||||||||||| || ||| || ||||||||||||||| || ||| ||| | ||||||
Sbjct: 14 ggcttcgtcgcctcatggctcgtcaagctcctcctctccaaggcccactacactgtccgc 73
Query: 155 ggcaccgtgcgcgaccctggtgctagcaagaatgcccatctcaaggtgctggaaggagct 214
|||||||||||||| || ||| | |||||||| |||||||||| ||| ||||| |||
Sbjct: 74 ggcaccgtgcgcgatcccggtaatgctaagaatgctcatctcaaggcgctagaaggtgct 133
Query: 215 gaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatcagca 274
| ||||||| ||||||| |||| ||||| ||| ||||||||||||||||||| || ||
Sbjct: 134 ggggaaaggctgcagctgctcagcgctgacctgctggactacgacagcattgcgtcggcg 193
Query: 275 gttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgaccctcc 334
||||| ||||||||||| ||||||||||| ||||||||||||| ||| | || | ||
Sbjct: 194 gttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggtagatcgacc 253
Query: 335 aaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggct 394
|||||||||| || || ||||| || ||||||||||| ||| |||||||| ||||||
Sbjct: 254 aaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaaggct 313
Query: 395 tgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgt 449
||| | ||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 314 tgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgtgt 368
Score = 202 bits (102), Expect = 2e-050
Identities = 351/434 (80%)
Strand = Plus / Plus
Query: 119 aagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgct 178
||||||||||||||| || ||| ||| | |||||||||||||||||||| || ||| |
Sbjct: 38 aagctcctcctctccaaggcccactacactgtccgcggcaccgtgcgcgatcccggtaat 97
Query: 179 agcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaag 238
|||||||| |||||||||| ||| ||||| |||| ||||||| ||||||| ||||
Sbjct: 98 gctaagaatgctcatctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagc 157
Query: 239 gctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttc 298
||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 158 gctgacctgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtcttc 217
Query: 299 catgtagctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagct 358
||||| ||||||||||||| ||| | || | |||||||||||| || || |||||
Sbjct: 218 catgttgctagccctgtcccttctggtagatcgaccaaccctgaggaagaagttatagcc 277
Query: 359 cccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcga 418
|| ||||||||||| ||| |||||||| ||||||||| | ||||||||||||| ||||
Sbjct: 278 cctgctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcga 337
Query: 419 gttgtggtggtgtcttcatgtggagctgtgtatgctaatcctatttatccgaagggtaag 478
||||| | ||||||||||||| ||||||| ||||||| | || ||||| ||
Sbjct: 338 gttgtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaa 397
Query: 479 gtgtttgatgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtat 538
|| ||| ||||||| |||||||||| |||||| ||||| ||| ||||||||||||
Sbjct: 398 gtatttactgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtat 457
Query: 539 ttagtttccaaaac 552
|| ||||||||||
Sbjct: 458 ttgctttccaaaac 471
>gb|BJ464456.1|BJ464456 BJ464456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34g17 5', mRNA sequence
Length = 647
Score = 204 bits (103), Expect = 5e-051
Identities = 474/597 (79%), Gaps = 3/597 (0%)
Strand = Plus / Plus
Query: 212 gctgaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatca 271
|||| ||||||| ||||||| |||| ||||| ||| ||||||||||||||||||| ||
Sbjct: 11 gctggggaaaggctgcagctgctcagcgctgacctgctggactacgacagcattgcgtcg 70
Query: 272 gcagttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgaccc 331
|| ||||| ||||||||||| ||||||||||| ||||||||||||| ||| | || |
Sbjct: 71 gcggttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggtagatcg 130
Query: 332 tccaaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaag 391
|||||||||||| || || ||||| || ||||||||||| ||| |||||||| |||
Sbjct: 131 accaaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaag 190
Query: 392 gcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgtat 451
|||||| | ||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 191 gcttgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgtgttc 250
Query: 452 gctaatcctatttatccgaagggtaaggtgtttgatgaagactgctggtcagatgaggat 511
||||||| | || ||||| || || ||| ||||||| |||||||||| ||||||
Sbjct: 251 aacaatcctaactggcccaagggcaaagtatttactgaagacagctggtcagacgaggat 310
Query: 512 tactgcaggaagaaggaggattggtatttagtttccaaaacactgtcggaacgagaagct 571
||||| ||| |||||||||||||| |||||||||| | | || || || |||
Sbjct: 311 ctgtgcagaaagggtgaggattggtatttgctttccaaaacgcgcgcagagcgtgaggct 370
Query: 572 cttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtattt 631
|||||| |||||| ||||| ||| |||| |||||| || || || ||||| ||| ||
Sbjct: 371 tttgcttatgcagcgaaaactgggatggatgttgtagctattctaccatcattggtactt 430
Query: 632 ggacccttgatgcagcctacagtaaatttgagcagcgaaatgatccttaaatatttcaa- 690
|| |||||||||||||| ||||| ||| |||||| |||| |||| |||||| ||||
Sbjct: 431 ggccccttgatgcagccaacagtgaatgcgagcagtaaaattctcctcaaatatctcaaa 490
Query: 691 --agatctcgagactgttgaaaatgtactcagtaatatggtggatattcgtgatgttgct 748
||| | |||||||| |||||| | || | ||| | |||||| | |||||||||||
Sbjct: 491 ggagaacatgagactgtagaaaatagattctggaatctagtggatgtccgtgatgttgcc 550
Query: 749 gatgctcttcttctgacttacgaaaagccagaagcgtctggacgatacatctgcagt 805
||||||||||||||| | || ||||| ||||| || |||||||| ||||||||||||
Sbjct: 551 gatgctcttcttctggcatatgaaaatccagaggcatctggacggtacatctgcagt 607
>gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_O04 5', mRNA sequence
Length = 432
Score = 198 bits (100), Expect = 3e-049
Identities = 307/376 (81%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| | ||||||||||| || ||| || |||||||||||||||
Sbjct: 16 gtgtgcgtgaccggcgcaagaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 75
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 76 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 135
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||| | |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 136 ctcaaggcgctagaaagtgctggggaaaggctgcagctgctcagcgctgacctgctggac 195
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| |||||||| || ||||||||||| |||||||||
Sbjct: 196 tacgacagcattgcgtcggcggttgctggctgtgaaggcgtcttccatgttgctagccct 255
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || || ||||| || |||||||||||
Sbjct: 256 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 315
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 433
||| |||||||| || |||||| | ||||||||||||| ||||||||| | ||||||
Sbjct: 316 acactgaatgtgttgaaagcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 375
Query: 434 tcatgtggagctgtgt 449
||||||| |||||||
Sbjct: 376 tcatgtgctgctgtgt 391
>gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46L02
5-PRIME, mRNA sequence
Length = 421
Score = 196 bits (99), Expect = 1e-048
Identities = 292/355 (82%), Gaps = 1/355 (0%)
Strand = Plus / Plus
Query: 95 ggcttcgtcgcgtcggagctggtgaagctcctcctctcccggggccaatacgcggtccgc 154
||||||||||| || ||| || ||||||||||||| || || ||| ||| | ||||||
Sbjct: 5 ggcttcgtcgcctcatggctcgtcaagctcctcctct-ccaggcccactacactgtccgc 63
Query: 155 ggcaccgtgcgcgaccctggtgctagcaagaatgcccatctcaaggtgctggaaggagct 214
|||||||||||||| || ||| | |||||||| |||||||||| ||| ||||| |||
Sbjct: 64 ggcaccgtgcgcgatcccggtaatgctaagaatgctcatctcaaggcgctagaaggtgct 123
Query: 215 gaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatcagca 274
| ||||||| ||||||| |||| ||||| ||| ||||||||||||||||||| || ||
Sbjct: 124 ggggaaaggctgcagctgctcagcgctgacctgctggactacgacagcattgcgtcggcg 183
Query: 275 gttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgaccctcc 334
||||| ||||||||||| ||||||||||| ||||||||||||| ||| | || | ||
Sbjct: 184 gttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggtagatcgacc 243
Query: 335 aaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggct 394
|||||||||| || || ||||| || ||||||||||| ||| |||||||| ||||||
Sbjct: 244 aaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaaggct 303
Query: 395 tgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgt 449
||| | ||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 304 tgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgtgt 358
>gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o15 5', mRNA sequence
Length = 521
Score = 192 bits (97), Expect = 2e-047
Identities = 290/355 (81%)
Strand = Plus / Plus
Query: 95 ggcttcgtcgcgtcggagctggtgaagctcctcctctcccggggccaatacgcggtccgc 154
||||||||||| || ||| || ||||||||||||||| || ||| ||| | ||||||
Sbjct: 13 ggcttcgtcgcctcatggctcgtcaagctcctcctctccaaggcccactacactgtccgc 72
Query: 155 ggcaccgtgcgcgaccctggtgctagcaagaatgcccatctcaaggtgctggaaggagct 214
|||||||||||||| || ||| | |||||||| |||||||||| ||| ||||| |||
Sbjct: 73 ggcaccgtgcgcgatcccggtaatgctaagaatgctcatctcaaggcgctagaaggtgct 132
Query: 215 gaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatcagca 274
| ||||||| ||||||| |||| ||||| ||| ||||||||||||||||||| || ||
Sbjct: 133 ggggaaaggctgcagctgctcagcgctgacctgctggactacgacagcattgcgtcggcg 192
Query: 275 gttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgaccctcc 334
||||| ||||||||||| ||||||||||| ||||||||||||| ||| | || | ||
Sbjct: 193 gttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggtagatcgacc 252
Query: 335 aaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggct 394
|||||||||| || || ||||| || ||||||||||| ||| |||||||| ||||||
Sbjct: 253 aaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaaggct 312
Query: 395 tgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgt 449
||| | ||||||||||||| |||||||| | ||| ||||||||| |||||||
Sbjct: 313 tgcaacgaggcaaaagttaagcgagttgncatagtgncttcatgtgctgctgtgt 367
>gb|BE215014.1|BE215014 HV_CEb0005I17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005I17f, mRNA sequence
Length = 622
Score = 184 bits (93), Expect = 5e-045
Identities = 279/341 (81%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||
Sbjct: 84 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 143
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 193
|| ||| ||| | |||||||||||||||||||| || ||| | |||||||| |||
Sbjct: 144 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 203
Query: 194 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 253
||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| |||||
Sbjct: 204 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 263
Query: 254 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 313
|||||||||||||| || || ||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 264 tacgacagcattgcgtcggcggttgctggctgtgagggcgtctttcatgttgctagccct 323
Query: 314 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaacaggt 373
|||| ||| | || | |||||||||||| || | ||||| || |||||||||||
Sbjct: 324 gtcccttctggtagatcgaccaaccctgaggaagaaggtatagcccctgctgtaacaggc 383
Query: 374 acaaccaatgtgttaaaggcttgctatgaggcaaaagttag 414
||| |||||||| ||||||||| | |||||||||||||
Sbjct: 384 acactgaatgtgttgaaggcttgcaaccaggcaaaagttag 424
>gb|CA007077.1|CA007077 HU06K19r HU Hordeum vulgare subsp. vulgare cDNA clone HU06K19
5-PRIME, mRNA sequence
Length = 459
Score = 184 bits (93), Expect = 5e-045
Identities = 246/297 (82%)
Strand = Plus / Plus
Query: 153 gcggcaccgtgcgcgaccctggtgctagcaagaatgcccatctcaaggtgctggaaggag 212
|||||||||||||||| || ||| | |||||||| |||||||||| ||| ||||| |
Sbjct: 11 gcggcaccgtgcgcgatcccggtaatgctaagaatgctcatctcaaggcgctagaaggtg 70
Query: 213 ctgaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatcag 272
||| ||||||| ||||||| |||| ||||| ||| ||||||||||||||||||| || |
Sbjct: 71 ctggggaaaggctgcagctgctcagcgctgacctgctggactacgacagcattgcgtcgg 130
Query: 273 cagttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgaccct 332
| ||||| ||||||||||| ||||||||||| ||||||||||||| ||| | || |
Sbjct: 131 cggttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggtagatcga 190
Query: 333 ccaaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaagg 392
|||||||||||| || || ||||| || ||||||||||| ||| |||||||| ||||
Sbjct: 191 ccaaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaagg 250
Query: 393 cttgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgt 449
||||| | ||||||||||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 251 cttgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgtgt 307
>gb|BG369084.2|BG369084 HVSMEi0021K17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021K17f, mRNA sequence
Length = 592
Score = 167 bits (84), Expect = 1e-039
Identities = 245/299 (81%)
Strand = Plus / Plus
Query: 151 ccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccatctcaaggtgctggaagg 210
|||||||||||||||||| || ||| | |||||||| |||||||||| ||| |||||
Sbjct: 121 ccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcatctcaaggcgctagaagg 180
Query: 211 agctgaggaaaggttgcagcttctcaaggctgatctgatggactacgacagcattgcatc 270
|||| ||||||| |||| || |||| ||||| ||| ||||||||||||||||||| ||
Sbjct: 181 tgctggggaaaggctgcaactgctcagcgctgacctgctggactacgacagcattgcgtc 240
Query: 271 agcagttgccggctgtgagggtgtcttccatgtagctagccctgtcctttcccatcgacc 330
|| ||||| ||||||||||| ||||||||||| ||||||||||||| ||| || |
Sbjct: 241 ggcggttgctggctgtgagggcgtcttccatgttgctagccctgtcccttctggcagatc 300
Query: 331 ctccaaccctgaggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaa 390
|||||||||||| || || ||||| || ||||||||||| ||| |||||||| ||
Sbjct: 301 gaccaaccctgaggaagaagttatagcccctgctgtaacaggcacactgaatgtgttgaa 360
Query: 391 ggcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtgt 449
||||||| | |||||| |||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 361 ggcttgcaacgaggcanaagttaagcgagttgtcatagtgtcttcatgtgctgctgtgt 419
>gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
5-PRIME, mRNA sequence
Length = 647
Score = 165 bits (83), Expect = 4e-039
Identities = 386/487 (79%)
Strand = Plus / Plus
Query: 66 ggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcc 125
|||||| |||||||||||| ||||| || |||||| |||| ||| ||| || |||||||
Sbjct: 147 ggaagaccgtgtgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcc 206
Query: 126 tcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaaga 185
|||||||| ||| || ||| ||||||||||||||||||| || || ||| | ||||
Sbjct: 207 tcctctccaagggacactacacggtccgcggcaccgtgcgagatcccggtaatgctaaga 266
Query: 186 atgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatc 245
|||| ||||| |||| || ||||| |||| |||||||||||| || |||| || || |
Sbjct: 267 atgctcatcttaaggcactagaaggtgctggggaaaggttgcaactgctcagcgccgacc 326
Query: 246 tgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtag 305
|| || |||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |
Sbjct: 327 tgctgaactacgacagcattgcgtcagcggttgctggctgtgatggggtcttccatgttg 386
Query: 306 ctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctg 365
|||||||||||| ||| || | |||| ||||||| || || ||||| || ||||
Sbjct: 387 ctagccctgtcccttctggcagatcaaccaatcctgaggaagaagttatagcccctgctg 446
Query: 366 taacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtgg 425
||||||| ||| ||||| || || |||||||| ||||| ||||||| |||||||||
Sbjct: 447 taacaggcacactgaatgtcttgaaagcttgctacgaggcgaaagttaagcgagttgtca 506
Query: 426 tggtgtcttcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttg 485
|||| |||||| || ||||||| |||||||| | || ||||| || | || |
Sbjct: 507 tggtatcttcagttgctgctgtgtccaataatcctaactggcctaagggcaaattcttcg 566
Query: 486 atgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagttt 545
|||||||| |||||||||| |||||| |||||| ||| |||||||||||||| |||
Sbjct: 567 atgaagacagctggtcagacgaggatctctgcagaaagggtgaggattggtatttccttt 626
Query: 546 ccaaaac 552
|||||||
Sbjct: 627 ccaaaac 633
>gb|CA013907.1|CA013907 HT09N23r HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
5-PRIME, mRNA sequence
Length = 636
Score = 161 bits (81), Expect = 7e-038
Identities = 422/535 (78%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 353 atagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagtt 412
||||| || ||||||||||| ||| ||||| || || |||||||| ||||| ||||||
Sbjct: 78 atagcccctgctgtaacaggcacactgaatgtcttgaaagcttgctacgaggcgaaagtt 137
Query: 413 aggcgagttgtggtggtgtcttcatgtggagctgtgtatgctaatcctatttatccgaag 472
| ||||||||| |||| |||||| || ||||||| |||||||| | || |||
Sbjct: 138 aagcgagttgtcatggtatcttcagttgctgctgtgtccaataatcctaactggcctaag 197
Query: 473 ggtaaggtgtttgatgaagactgctggtcagatgaggattactgcaggaagaaggaggat 532
|| || | || ||||||||| |||||||||| |||||| |||||| ||| ||||||
Sbjct: 198 ggcaaattcttcgatgaagacagctggtcagacgaggatctctgcagaaagggtgaggat 257
Query: 533 tggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaaaaaca 592
|||||||| |||||||||| || | || || || ||| |||||| ||||| ||||||
Sbjct: 258 tggtatttcctttccaaaacgctcgcagagcgtgaggcttttgcttatgcagaaaaaact 317
Query: 593 gggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagcctaca 652
||| |||| ||||||||| | || || || || ||| |||| |||||||||||| |||||
Sbjct: 318 gggttggatgttgtaactatatgcccatcgttggtaattggccccttgatgcagtctaca 377
Query: 653 gtaaatttgagcagcgaaatgatccttaaatatttcaa---agatctcgagactgttgaa 709
|||||| |||||| | || || |||| ||| |||| ||| | || ||||| |||
Sbjct: 378 gtaaatacgagcagtaatattctcattaattatctcaaaggagaacgtgatactgtagaa 437
Query: 710 aatgtactcagtaatatggtggatattcgtgatgttgctgatgctcttcttctgacttac 769
||| |||||| ||| | |||||| ||||||||||||| ||||||||||| || | ||
Sbjct: 438 aataaactcaggaatctagtggatgttcgtgatgttgccgatgctcttctattggcatat 497
Query: 770 gaaaagccagaagcgtctggacgatacatctgcagttcacatgcaataaaaatttctgat 829
||||| ||||| ||||||||||| ||||||||||||||| || ||||| | ||||||
Sbjct: 498 gaaaaaccagaggcgtctggacggtacatctgcagttcagtaccagtaaaagtctctgat 557
Query: 830 atgataaacatactgaagaccatgtatccgtcttacccttatcccaaaaattttg 884
||||||| | ||||||||||| | |||||| | ||| ||||||||||||| ||||
Sbjct: 558 atgataagcgtactgaagaccttatatccgacatacacttatcccaaaaactttg 612
>gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G17
5-PRIME, mRNA sequence
Length = 622
Score = 157 bits (79), Expect = 1e-036
Identities = 376/475 (79%)
Strand = Plus / Plus
Query: 66 ggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcc 125
|||||| |||||||||||| ||||| || |||||| |||| ||| ||| || |||||||
Sbjct: 146 ggaagaccgtgtgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcc 205
Query: 126 tcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaaga 185
|||||||| ||| || ||| ||||||||||||||||||| || || ||| | ||||
Sbjct: 206 tcctctccaagggacactacacggtccgcggcaccgtgcgagatcccggtaatgctaaga 265
Query: 186 atgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatc 245
|||| ||||| |||| || ||||| |||| |||||||||||| || |||| || || |
Sbjct: 266 atgctcatcttaaggcactagaaggtgctggggaaaggttgcaactgctcagcgccgacc 325
Query: 246 tgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtag 305
|| || |||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |
Sbjct: 326 tgctgaactacgacagcattgcgtcagcggttgctggctgtgatggggtcttccatgttg 385
Query: 306 ctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctg 365
|||||||||||| ||| || | |||| ||||||| || || ||||| || ||||
Sbjct: 386 ctagccctgtcccttctggcagatcaaccaatcctgaggaagaagttatagcccctgctg 445
Query: 366 taacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtgg 425
||||||| ||| ||||| || || |||||||| ||||| ||||||| |||||||||
Sbjct: 446 taacaggcacactgaatgtcttgaaagcttgctacgaggcgaaagttaagcgagttgtca 505
Query: 426 tggtgtcttcatgtggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttg 485
|||| |||||| || ||||||| |||||||| | || ||||| || | || |
Sbjct: 506 tggtatcttcagttgctgctgtgtccaataatcctaactggcctaagggcaaattcttcg 565
Query: 486 atgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtattt 540
|||||||| |||||||||| |||||| |||||| ||| ||||||||||||||
Sbjct: 566 atgaagacagctggtcagacgaggatctctgcagaaagggtgaggattggtattt 620
>gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. vulgare cDNA clone HF08P24
5-PRIME, mRNA sequence
Length = 401
Score = 151 bits (76), Expect = 6e-035
Identities = 208/252 (82%)
Strand = Plus / Plus
Query: 66 ggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcc 125
|||||| |||||||||||| ||||| || |||||| |||| ||| ||| || |||||||
Sbjct: 57 ggaagaccgtgtgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcc 116
Query: 126 tcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaaga 185
|||||||| ||| || ||| ||||||||||||||||||| || || ||| | ||||
Sbjct: 117 tcctctccaagggacactacacggtccgcggcaccgtgcgagatcccggtaatgctaaga 176
Query: 186 atgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatc 245
|||| ||||| |||| || ||||| |||| |||||||||||| || |||| || || |
Sbjct: 177 atgctcatcttaaggcactagaaggtgctggggaaaggttgcaactgctcagcgccgacc 236
Query: 246 tgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtag 305
|| || |||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |
Sbjct: 237 tgctgaactacgacagcattgcgtcagcggttgctggctgtgatggggtcttccatgttg 296
Query: 306 ctagccctgtcc 317
||||||||||||
Sbjct: 297 ctagccctgtcc 308
>gb|CB876883.1|CB876883 HP02M04T HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
5-PRIME, mRNA sequence
Length = 633
Score = 147 bits (74), Expect = 1e-033
Identities = 358/452 (79%), Gaps = 3/452 (0%)
Strand = Plus / Plus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| ||||| |||||| ||| |||| ||||||||| | || || || || ||| |||
Sbjct: 25 ttgcttatgcagaaaaaactgggttggatgttgtaactatatgcccatcgttggtaattg 84
Query: 633 gacccttgatgcagcctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag 692
| |||||||||||| ||||||||||| |||||| | || || |||| ||| ||||||
Sbjct: 85 gccccttgatgcagtctacagtaaatacgagcagtaatattctcattaattatctcaaag 144
Query: 693 ---atctcgagactgttgaaaatgtactcagtaatatggtggatattcgtgatgttgctg 749
| | || ||||| |||||| |||||| ||| | |||||| ||||||||||||| |
Sbjct: 145 gagaacgtgatactgtagaaaataaactcaggaatctagtggatgttcgtgatgttgccg 204
Query: 750 atgctcttcttctgacttacgaaaagccagaagcgtctggacgatacatctgcagttcac 809
|||||||||| || | || ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 205 atgctcttctattggcatatgaaaaaccagaggcgtctggacggtacatctgcagttcag 264
Query: 810 atgcaataaaaatttctgatatgataaacatactgaagaccatgtatccgtcttaccctt 869
|| ||||| | ||||||||||||| | ||||||||||| | |||||| | ||| |||
Sbjct: 265 taccagtaaaagtctctgatatgataagcgtactgaagaccttatatccgacatacactt 324
Query: 870 atcccaaaaattttgtggaagatgatgtcaactctgtatacagctctgagaaactgcaga 929
|||||||||| ||||| |||| || | || || | || ||||| |||||||| ||||
Sbjct: 325 atcccaaaaactttgtagaagtcgaaggaaatactatttatagctcggagaaacttcaga 384
Query: 930 agctggggtggaccttcaagcctatagaggaatccctccgtgacactgttgaatcctaca 989
|||| ||||||| ||||| |||| ||||| | ||||| | || | || ||||||||||
Sbjct: 385 agctagggtggatcttcaggcctttagagaagaccctcggagatagcgtggaatcctaca 444
Query: 990 aggcatttggcatcctgaattgaacatccaac 1021
|||| |||| ||||||| ||| ||||||||
Sbjct: 445 gagcatctggcgtcctgaactgagcatccaac 476
>gb|CB879567.1|CB879567 HP02M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP02M04
3-PRIME, mRNA sequence
Length = 665
Score = 147 bits (74), Expect = 1e-033
Identities = 358/452 (79%), Gaps = 3/452 (0%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| ||||| |||||| ||| |||| ||||||||| | || || || || ||| |||
Sbjct: 641 ttgcttatgcagaaaaaactgggttggatgttgtaactatatgcccatcgttggtaattg 582
Query: 633 gacccttgatgcagcctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag 692
| |||||||||||| ||||||||||| |||||| | || || |||| ||| ||||||
Sbjct: 581 gccccttgatgcagtctacagtaaatacgagcagtaatattctcattaattatctcaaag 522
Query: 693 ---atctcgagactgttgaaaatgtactcagtaatatggtggatattcgtgatgttgctg 749
| | || ||||| |||||| |||||| ||| | |||||| ||||||||||||| |
Sbjct: 521 gagaacgtgatactgtagaaaataaactcaggaatctagtggatgttcgtgatgttgccg 462
Query: 750 atgctcttcttctgacttacgaaaagccagaagcgtctggacgatacatctgcagttcac 809
|||||||||| || | || ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 461 atgctcttctattggcatatgaaaaaccagaggcgtctggacggtacatctgcagttcag 402
Query: 810 atgcaataaaaatttctgatatgataaacatactgaagaccatgtatccgtcttaccctt 869
|| ||||| | ||||||||||||| | ||||||||||| | |||||| | ||| |||
Sbjct: 401 taccagtaaaagtctctgatatgataagcgtactgaagaccttatatccgacatacactt 342
Query: 870 atcccaaaaattttgtggaagatgatgtcaactctgtatacagctctgagaaactgcaga 929
|||||||||| ||||| |||| || | || || | || ||||| |||||||| ||||
Sbjct: 341 atcccaaaaactttgtagaagtcgaaggaaatactatttatagctcggagaaacttcaga 282
Query: 930 agctggggtggaccttcaagcctatagaggaatccctccgtgacactgttgaatcctaca 989
|||| ||||||| ||||| |||| ||||| | ||||| | || | || ||||||||||
Sbjct: 281 agctagggtggatcttcaggcctttagagaagaccctcggagatagcgtggaatcctaca 222
Query: 990 aggcatttggcatcctgaattgaacatccaac 1021
|||| |||| ||||||| ||| ||||||||
Sbjct: 221 gagcatctggcgtcctgaactgagcatccaac 190
>gb|AV914084.1|AV914084 AV914084 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 5', mRNA sequence
Length = 593
Score = 139 bits (70), Expect = 2e-031
Identities = 396/504 (78%), Gaps = 3/504 (0%)
Strand = Plus / Plus
Query: 379 caatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatg 438
||||||||| ||||||||| | ||||||||||||| ||||||||| | |||||||||||
Sbjct: 11 caatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatg 70
Query: 439 tggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagactgctg 498
|| ||||||| ||||||| | || ||||| || || ||| ||||||| ||||
Sbjct: 71 tgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagacagctg 130
Query: 499 gtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaacactgtc 558
|||||| |||||| ||||| ||| |||||||||||||| |||||||||| | |
Sbjct: 131 gtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacgcgcgc 190
Query: 559 ggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtcc 618
|| || || ||| |||||| |||||| ||||| ||| |||| |||||| || || ||
Sbjct: 191 agagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctattctacc 250
Query: 619 gtcattagtatttggacccttgatgcagcctacagtaaatttgagcagcgaaatgatcct 678
||||| ||| |||| |||||||||||||| ||||| ||| |||||| |||| ||||
Sbjct: 251 atcattggtacttggccccttgatgcagccaacagtgaatgcgagcagtaaaattctcct 310
Query: 679 taaatatttcaaag---atctcgagactgttgaaaatgtactcagtaatatggtggatat 735
|||||| |||||| | | |||||||| |||||| | || | ||| | |||||| |
Sbjct: 311 caaatatctcaaaggagaacatgagactgtagaaaatagattctggaatctagtggatgt 370
Query: 736 tcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtctggacgata 795
||||||||||| ||||||||||||||| | || ||||| ||||| || |||||||| ||
Sbjct: 371 ccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggcatctggacggta 430
Query: 796 catctgcagttcacatgcaataaaaatttctgatatgataaacatactgaagaccatgta 855
|||||||||| || ||||||| |||||||| | |||||||| ||||||||| | ||
Sbjct: 431 catctgcagtccagtacgaataaaagtttctgatgtcataaacattctgaagaccttata 490
Query: 856 tccgtcttacccttatcccaaaaa 879
||| | ||| |||||||||||||
Sbjct: 491 tccaacatacacttatcccaaaaa 514
Score = 58.0 bits (29), Expect = 7e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagag 958
||||||||||| |||||||| ||||||||||||| |||| |||||
Sbjct: 549 tctgagaaacttcagaagctagggtggaccttcaggcctgtagag 593
>gb|CA010479.1|CA010479 HT09N23u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N23
3-PRIME, mRNA sequence
Length = 505
Score = 137 bits (69), Expect = 1e-030
Identities = 258/321 (80%)
Strand = Plus / Minus
Query: 701 actgttgaaaatgtactcagtaatatggtggatattcgtgatgttgctgatgctcttctt 760
||||| |||||| |||||| ||| | |||||| ||||||||||||| |||||||||||
Sbjct: 454 actgtagaaaataaactcaggaatctagtggatgttcgtgatgttgccgatgctcttcta 395
Query: 761 ctgacttacgaaaagccagaagcgtctggacgatacatctgcagttcacatgcaataaaa 820
|| | || ||||| ||||| ||||||||||| ||||||||||||||| || |||||
Sbjct: 394 ttggcatatgaaaaaccagaggcgtctggacggtacatctgcagttcagtaccagtaaaa 335
Query: 821 atttctgatatgataaacatactgaagaccatgtatccgtcttacccttatcccaaaaat 880
| ||||||||||||| | ||||||||||| | |||||| | ||| |||||||||||||
Sbjct: 334 gtctctgatatgataagcgtactgaagaccttatatccgacatacacttatcccaaaaac 275
Query: 881 tttgtggaagatgatgtcaactctgtatacagctctgagaaactgcagaagctggggtgg 940
||||| |||| || | || || | || ||||| |||||||| |||||||| ||||||
Sbjct: 274 tttgtagaagtcgaaggaaatactatttatagctcggagaaacttcagaagctagggtgg 215
Query: 941 accttcaagcctatagaggaatccctccgtgacactgttgaatcctacaaggcatttggc 1000
| ||||| |||| ||||| | ||||| | || | || |||||||||| |||| ||||
Sbjct: 214 atcttcaggcctttagagaagaccctcggagatagcgtggaatcctacagagcatctggc 155
Query: 1001 atcctgaattgaacatccaac 1021
||||||| ||| ||||||||
Sbjct: 154 gtcctgaactgagcatccaac 134
>gb|CB876594.1|CB876594 HX11M09w HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
3-PRIME, mRNA sequence
Length = 565
Score = 131 bits (66), Expect = 6e-029
Identities = 237/294 (80%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||||||| || | || ||||| ||||| ||||||
Sbjct: 562 gtggatgttcgtgatgttgccgatgctcttctattggcatatgaaaaaccagaggcgtct 503
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||| ||||||||||||||| || ||||| | ||||||||||||| | ||||||||
Sbjct: 502 ggacggtacatctgcagttcagtaccagtaaaagtctctgatatgataagcgtactgaag 443
Query: 848 accatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtcaactctgta 907
||| | |||||| | ||| ||||||||||||| ||||| |||| || | || || |
Sbjct: 442 accttatatccgacatacacttatcccaaaaactttgtagaagtcgaaggaaatactatt 383
Query: 908 tacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctc 967
|| ||||| |||||||| |||||||| ||||||| ||||| |||| ||||| | |||||
Sbjct: 382 tatagctcggagaaacttcagaagctagggtggatcttcaggcctttagagaagaccctc 323
Query: 968 cgtgacactgttgaatcctacaaggcatttggcatcctgaattgaacatccaac 1021
| || | || |||||||||| |||| |||| ||||||| ||| ||||||||
Sbjct: 322 ggagatagcgtggaatcctacagagcatctggcgtcctgaactgagcatccaac 269
>gb|CB876200.1|CB876200 HX10J08w HX Hordeum vulgare subsp. vulgare cDNA clone HX10J08
3-PRIME, mRNA sequence
Length = 562
Score = 125 bits (63), Expect = 4e-027
Identities = 236/294 (80%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||||||| || | || |||| ||||| ||||||
Sbjct: 562 gtggatgttcgtgatgttgccgatgctcttctattggcatatgaaanaccagaggcgtct 503
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||| ||||||||||||||| || ||||| | ||||||||||||| | ||||||||
Sbjct: 502 ggacggtacatctgcagttcagtaccagtaaaagtctctgatatgataagcgtactgaag 443
Query: 848 accatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtcaactctgta 907
||| | |||||| | ||| ||||||||||||| ||||| |||| || | || || |
Sbjct: 442 accttatatccgacatacacttatcccaaaaactttgtagaagtcgaaggaaatactatt 383
Query: 908 tacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctc 967
|| ||||| |||||||| |||||||| ||||||| ||||| |||| ||||| | |||||
Sbjct: 382 tatagctcggagaaacttcagaagctagggtggatcttcaggcctttagagaagaccctc 323
Query: 968 cgtgacactgttgaatcctacaaggcatttggcatcctgaattgaacatccaac 1021
| || | || |||||||||| |||| |||| ||||||| ||| ||||||||
Sbjct: 322 ggagatagcgtggaatcctacagagcatctggcgtcctgaactgagcatccaac 269
>gb|AV918145.1|AV918145 AV918145 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20a13 3', mRNA sequence
Length = 767
Score = 123 bits (62), Expect = 1e-026
Identities = 395/504 (78%), Gaps = 4/504 (0%)
Strand = Plus / Minus
Query: 380 aatgtgttaaaggcttgctatgaggc-aaaagttaggcgagttgtggtggtgtcttcatg 438
|||||||| ||||||||| | ||||| |||||||| ||||||||| | |||||||||||
Sbjct: 751 aatgtgttgaaggcttgcaacgaggccaaaagttaagcgagttgtcatagtgtcttcatg 692
Query: 439 tggagctgtgtatgctaatcctatttatccgaagggtaaggtgtttgatgaagactgctg 498
|| ||||||| ||||||| | || ||||| || || ||| ||||||| ||||
Sbjct: 691 tgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagacagctg 632
Query: 499 gtcagatgaggattactgcaggaagaaggaggattggtatttagtttccaaaacactgtc 558
|||||| |||||| ||||| ||| |||||||||||||| |||||||||| | |
Sbjct: 631 gtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacgcgcgc 572
Query: 559 ggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtcc 618
|| || || ||| |||||| |||||| ||||| ||| |||| |||||| || || ||
Sbjct: 571 agagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtagctattctacc 512
Query: 619 gtcattagtatttggacccttgatgcagcctacagtaaatttgagcagcgaaatgatcct 678
||||| ||| |||| |||||||||||||| ||||| ||| |||||| |||| ||||
Sbjct: 511 atcattggtacttggccccttgatgcagccaacagtgaatgcgagcagtaaaattctcct 452
Query: 679 taaatatttcaaag---atctcgagactgttgaaaatgtactcagtaatatggtggatat 735
|||||| |||||| | | |||||||| |||||| | || | ||| | |||||| |
Sbjct: 451 caaatatctcaaaggagaacatgagactgtagaaaatagattctggaatctagtggatgt 392
Query: 736 tcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtctggacgata 795
||||||||||| ||||||||||||||| | || ||||| ||||| || |||||||| ||
Sbjct: 391 ccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggcatctggacggta 332
Query: 796 catctgcagttcacatgcaataaaaatttctgatatgataaacatactgaagaccatgta 855
|||||||||| || ||||||| |||||||| | |||||||| ||||||||| | ||
Sbjct: 331 catctgcagtccagtacgaataaaagtttctgatgtcataaacattctgaagaccttata 272
Query: 856 tccgtcttacccttatcccaaaaa 879
||| | ||| |||||||||||||
Sbjct: 271 tccaacatacacttatcccaaaaa 248
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 213 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 154
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 153 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 102
>gb|BJ459873.1|BJ459873 BJ459873 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak38j13 3', mRNA sequence
Length = 411
Score = 119 bits (60), Expect = 2e-025
Identities = 228/284 (80%)
Strand = Plus / Minus
Query: 738 gtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtctggacgataca 797
|||||||||| ||||||||||| || | || ||||| ||||| ||||||||||| ||||
Sbjct: 410 gtgatgttgccgatgctcttctattggcatatgaaaaaccagaggcgtctggacggtaca 351
Query: 798 tctgcagttcacatgcaataaaaatttctgatatgataaacatactgaagaccatgtatc 857
||||||||||| || ||||| | ||||||||||||| | ||||||||||| | ||||
Sbjct: 350 tctgcagttcagtaccagtaaaagtctctgatatgataagcgtactgaagaccttatatc 291
Query: 858 cgtcttacccttatcccaaaaattttgtggaagatgatgtcaactctgtatacagctctg 917
|| | ||| ||||||||||||| ||||| |||| || | || || | || ||||| |
Sbjct: 290 cgacatacacttatcccaaaaactttgtagaagtcgaaggaaatactatttatagctcgg 231
Query: 918 agaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgacactg 977
||||||| |||||||| ||||||| ||||| |||| ||||| | ||||| | || | |
Sbjct: 230 agaaacttcagaagctagggtggatcttcaggcctttagagaagaccctcggagatagcg 171
Query: 978 ttgaatcctacaaggcatttggcatcctgaattgaacatccaac 1021
| |||||||||| |||| |||| ||||||| ||| ||||||||
Sbjct: 170 tggaatcctacagagcatctggcgtcctgaactgagcatccaac 127
>gb|AV918687.1|AV918687 AV918687 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 3', mRNA sequence
Length = 630
Score = 115 bits (58), Expect = 4e-024
Identities = 312/396 (78%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||
Sbjct: 613 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 554
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
|||||| | | || || || ||| |||||| |||||| ||||| ||| |||| |||||
Sbjct: 553 caaaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgt 494
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
| || || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 493 agctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcag 434
Query: 667 cgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaa 723
|||| |||| |||||| |||||| | | |||||||| |||||| | || | ||
Sbjct: 433 taaaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaa 374
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| ||
Sbjct: 373 tctagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggc 314
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||
Sbjct: 313 atctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattct 254
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaa 879
||||||| | ||||| | ||| |||||||||||||
Sbjct: 253 gaagaccttatatccaacatacacttatcccaaaaa 218
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 183 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 124
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 123 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 72
>gb|AV919693.1|AV919693 AV919693 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 3', mRNA sequence
Length = 661
Score = 115 bits (58), Expect = 4e-024
Identities = 312/396 (78%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||
Sbjct: 644 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 585
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
|||||| | | || || || ||| |||||| |||||| ||||| ||| |||| |||||
Sbjct: 584 caaaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgt 525
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
| || || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 524 agctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcag 465
Query: 667 cgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaa 723
|||| |||| |||||| |||||| | | |||||||| |||||| | || | ||
Sbjct: 464 taaaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaa 405
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| ||
Sbjct: 404 tctagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggc 345
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||
Sbjct: 344 atctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattct 285
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaa 879
||||||| | ||||| | ||| |||||||||||||
Sbjct: 284 gaagaccttatatccaacatacacttatcccaaaaa 249
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 214 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 155
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 154 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 103
>gb|AV920406.1|AV920406 AV920406 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 3', mRNA sequence
Length = 662
Score = 115 bits (58), Expect = 4e-024
Identities = 312/396 (78%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||
Sbjct: 643 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 584
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
|||||| | | || || || ||| |||||| |||||| ||||| ||| |||| |||||
Sbjct: 583 caaaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgt 524
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
| || || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 523 agctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcag 464
Query: 667 cgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaa 723
|||| |||| |||||| |||||| | | |||||||| |||||| | || | ||
Sbjct: 463 taaaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaa 404
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| ||
Sbjct: 403 tctagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggc 344
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||
Sbjct: 343 atctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattct 284
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaa 879
||||||| | ||||| | ||| |||||||||||||
Sbjct: 283 gaagaccttatatccaacatacacttatcccaaaaa 248
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 213 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 154
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 153 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 102
>gb|BJ466412.1|BJ466412 BJ466412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 3', mRNA sequence
Length = 663
Score = 115 bits (58), Expect = 4e-024
Identities = 312/396 (78%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||
Sbjct: 643 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 584
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
|||||| | | || || || ||| |||||| |||||| ||||| ||| |||| |||||
Sbjct: 583 caaaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgt 524
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
| || || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 523 agctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcag 464
Query: 667 cgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaa 723
|||| |||| |||||| |||||| | | |||||||| |||||| | || | ||
Sbjct: 463 taaaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaa 404
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| ||
Sbjct: 403 tctagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggc 344
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||
Sbjct: 343 atctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattct 284
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaa 879
||||||| | ||||| | ||| |||||||||||||
Sbjct: 283 gaagaccttatatccaacatacacttatcccaaaaa 248
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 213 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 154
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 153 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 102
>gb|BJ466618.1|BJ466618 BJ466618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 3', mRNA sequence
Length = 681
Score = 115 bits (58), Expect = 4e-024
Identities = 312/396 (78%), Gaps = 3/396 (0%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||
Sbjct: 661 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 602
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
|||||| | | || || || ||| |||||| |||||| ||||| ||| |||| |||||
Sbjct: 601 caaaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgt 542
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
| || || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 541 agctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcag 482
Query: 667 cgaaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaa 723
|||| |||| |||||| |||||| | | |||||||| |||||| | || | ||
Sbjct: 481 taaaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaa 422
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| ||
Sbjct: 421 tctagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggc 362
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||
Sbjct: 361 atctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattct 302
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaa 879
||||||| | ||||| | ||| |||||||||||||
Sbjct: 301 gaagaccttatatccaacatacacttatcccaaaaa 266
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 231 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 172
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 171 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 120
>gb|BM442085.2|BM442085 EBan01_SQ002_C10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_C10 5', mRNA sequence
Length = 213
Score = 113 bits (57), Expect = 1e-023
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 730 ggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtctgg 789
|||| ||||||||||||| ||||||||||| || | || ||||| ||||| ||||||||
Sbjct: 19 ggatgttcgtgatgttgccgatgctcttctattggcatatgaaaaaccagaggcgtctgg 78
Query: 790 acgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaagac 849
||| ||||||||||||||| || ||||| | ||||||||||||| | ||||||||||
Sbjct: 79 acggtacatctgcagttcagtaccagtaaaagtctctgatatgataagcgtactgaagac 138
Query: 850 catgtatccgtcttacccttatcccaaaaattttgtggaag 890
| | |||||| | ||| ||||||||||||| ||||| ||||
Sbjct: 139 cttatatccgacatacacttatcccaaaaactttgtagaag 179
>gb|AV919125.1|AV919125 AV919125 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4k02 3', mRNA sequence
Length = 751
Score = 111 bits (56), Expect = 6e-023
Identities = 310/394 (78%), Gaps = 3/394 (0%)
Strand = Plus / Minus
Query: 489 aagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttcca 548
||||| |||||||||| |||||| ||||| ||| |||||||||||||| ||||||
Sbjct: 644 aagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttcca 585
Query: 549 aaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgtaa 608
|||| | | || || || ||| |||||| |||||| ||||| ||| |||| ||||||
Sbjct: 584 aaacgcgcgcagagcgtgaggcttttgcttatgcagcgaaaactgggatggatgttgtag 525
Query: 609 ctgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcagcg 668
|| || || ||||| ||| |||| |||||||||||||| ||||| ||| ||||||
Sbjct: 524 ctattctaccatcattggtacttggccccttgatgcagccaacagtgaatgcgagcagta 465
Query: 669 aaatgatccttaaatatttcaaag---atctcgagactgttgaaaatgtactcagtaata 725
|||| |||| |||||| |||||| | | |||||||| |||||| | || | |||
Sbjct: 464 aaattctcctcaaatatctcaaaggagaacatgagactgtagaaaatagattctggaatc 405
Query: 726 tggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgt 785
| |||||| | ||||||||||| ||||||||||||||| | || ||||| ||||| || |
Sbjct: 404 tagtggatgtccgtgatgttgccgatgctcttcttctggcatatgaaaatccagaggcat 345
Query: 786 ctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactga 845
||||||| |||||||||||| || ||||||| |||||||| | |||||||| ||||
Sbjct: 344 ctggacggtacatctgcagtccagtacgaataaaagtttctgatgtcataaacattctga 285
Query: 846 agaccatgtatccgtcttacccttatcccaaaaa 879
||||| | ||||| | ||| |||||||||||||
Sbjct: 284 agaccttatatccaacatacacttatcccaaaaa 251
Score = 103 bits (52), Expect = 1e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 216 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 157
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 156 agtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 105
Score = 44.1 bits (22), Expect = 0.011
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 389 aaggcttgctatgaggc-aaaagttaggcgagttgtggtggtgtcttcatgtggagctgt 447
||||||||| | ||||| |||||||| ||||||||| | ||||||||||||| |||||
Sbjct: 747 aaggcttgcaacgaggccaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgt 688
Query: 448 gt 449
||
Sbjct: 687 gt 686
>gb|BJ452324.1|BJ452324 BJ452324 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak38j13 5', mRNA sequence
Length = 430
Score = 103 bits (52), Expect = 1e-020
Identities = 227/284 (79%), Gaps = 1/284 (0%)
Strand = Plus / Plus
Query: 738 gtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtctggacgataca 797
|||||||||| ||||||||||| || | || ||||| || || ||||||||||| ||||
Sbjct: 2 gtgatgttgccgatgctcttctattggcatatgaaaaacc-gaggcgtctggacggtaca 60
Query: 798 tctgcagttcacatgcaataaaaatttctgatatgataaacatactgaagaccatgtatc 857
||||||||||| || ||||| | ||||||||||||| | ||||||||||| | ||||
Sbjct: 61 tctgcagttcagtaccagtaaaagtctctgatatgataagcgtactgaagaccttatatc 120
Query: 858 cgtcttacccttatcccaaaaattttgtggaagatgatgtcaactctgtatacagctctg 917
|| | ||| ||||||||||||| ||||| |||| || | || || | || ||||| |
Sbjct: 121 cgacatacacttatcccaaaaactttgtagaagtcgaaggaaatactatttatagctcgg 180
Query: 918 agaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgacactg 977
||||||| |||||||| ||||||| ||||| |||| ||||| | ||||| | || | |
Sbjct: 181 agaaacttcagaagctagggtggatcttcaggcctttagagaagaccctcggagatagcg 240
Query: 978 ttgaatcctacaaggcatttggcatcctgaattgaacatccaac 1021
| |||||||||| |||| |||| ||||||| ||| ||||||||
Sbjct: 241 tggaatcctacagagcatctggcgtcctgaactgagcatccaac 284
>gb|BF264429.3|BF264429 HV_CEa0009G11f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009G11f, mRNA sequence
Length = 802
Score = 79.8 bits (40), Expect = 2e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 66 ggaagagcgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcc 125
|||||| |||||||||||| ||||| || |||||| |||| ||| ||| || |||||||
Sbjct: 102 ggaagaccgtgtgcgtgactggcgcaggaggcttcatcgcctcgtggctcgttaagctcc 161
Query: 126 tcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||||||| ||| || ||| |||||||||||||||||||
Sbjct: 162 tcctctccaagggacactacacggtccgcggcaccgtgcg 201
>gb|BF267436.2|BF267436 HV_CEa0017O20f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0017O20f, mRNA sequence
Length = 934
Score = 79.8 bits (40), Expect = 2e-013
Identities = 94/112 (83%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| | |||
Sbjct: 254 tctgagaaacttcagaagctagggtggaccttcaggcctgtagagaagaccctcggagac 195
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
| ||| |||||| ||| |||| ||||||| |||| ||| ||||||||||||
Sbjct: 194 agtgtagaatcccccaaagcatctggcatcttgaactgagcatccaactagg 143
>gb|AV918067.1|AV918067 AV918067 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17k13 3', mRNA sequence
Length = 292
Score = 79.8 bits (40), Expect = 2e-013
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 914 tctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctccgtgac 973
||||||||||| |||||||| ||||||||||||| ||| ||||| | ||||| | | |
Sbjct: 155 tctgagaaacttcagaagctagggtggaccttcaggccngtagagaagaccctcggagnc 96
Query: 974 actgttgaatcctacaaggcatttggcatcctgaattgaacatccaacta 1023
| ||| |||||| |||| |||| |||||||||||| ||| ||||||||||
Sbjct: 95 agtgtcgaatccaacaaagcatctggcatcctgaactgagcatccaacta 46
Score = 46.1 bits (23), Expect = 0.003
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 814 aataaaaatttctgatatgataaacatactgaagaccatgtatccgtcttacccttatcc 873
||||||| |||||||| | || ||||| ||||||||| | ||||| | ||| |||||||
Sbjct: 255 aataaaagtttctgatgtcatnaacattctgaagaccttatatccaacatacacttatcc 196
Query: 874 caaaaa 879
||||||
Sbjct: 195 caaaaa 190
>gb|BI956550.1|BI956550 HVSMEn0004B16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004B16f, mRNA sequence
Length = 890
Score = 77.8 bits (39), Expect = 8e-013
Identities = 160/199 (80%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||||||||||||| |||||| ||| ||||||||||||||||||| | || ||| |
Sbjct: 176 agctcctcctctccaagggccactacacggtccgcggcaccgtgcgatatcccggtaatg 235
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||| |||| || |||| |||| |||||||||||| || || | |
Sbjct: 236 ctaagaatgctcatcttaaggcactacaaggtgctggggaaaggttgcaactgcttcacg 295
Query: 240 ctgatctgatggactacgacagcattg-catcagcagttgccggctgtgagggtgtcttc 298
| || ||| || ||||||||||| ||| | ||||| ||||| |||||||| || | | ||
Sbjct: 296 ccgacctgctgaactacgacagctttgccgtcagcggttgctggctgtgatggggccctc 355
Query: 299 catgtagctagccctgtcc 317
|||||||||||||||||||
Sbjct: 356 catgtagctagccctgtcc 374
>gb|BM444089.1|BM444089 EBem09_SQ004_C03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_C03 5', mRNA sequence
Length = 163
Score = 67.9 bits (34), Expect = 8e-010
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 119 aagctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgct 178
||||||||||||||| ||| || ||| ||||||||||||||||||| || || ||| |
Sbjct: 12 aagctcctcctctccaagggacactacacggtccgcggcaccgtgcgagatcccggtaat 71
Query: 179 agcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaag 238
|||||||| ||||| |||| || |||| |||| |||||||||||| || ||||
Sbjct: 72 gctaagaatgctcatcttaaggcactanaaggtgctggggaaaggttgcaactgctcatc 131
Query: 239 gctgatctgatggactacgacagcattgc 267
|| || ||| || ||||||||||||||||
Sbjct: 132 gccgacctgctgaactacgacagcattgc 160
>gb|BM098690.1|BM098690 EBem08_SQ003_M19_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_M19 5', mRNA sequence
Length = 387
Score = 61.9 bits (31), Expect = 5e-008
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 971 gacactgttgaatcctacaaggcatttggcatcctgaattgaacatccaactagg 1025
|||| ||| ||||||||||| |||| |||||||||||| ||| ||||||||||||
Sbjct: 221 gacagtgtcgaatcctacaaagcatctggcatcctgaactgagcatccaactagg 275
Score = 52.0 bits (26), Expect = 4e-005
Identities = 131/166 (78%)
Strand = Plus / Plus
Query: 527 gaggattggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagca 586
|||||||||||||| |||||||||| | | || || || ||| |||||| ||||||
Sbjct: 23 gaggattggtatttgctttccaaaacgcgcgcagagcgtgaggcttttgcttatgcagcg 82
Query: 587 aaaacagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcag 646
||||| ||| |||| |||||| || || || ||||| ||| |||| ||||||||||||
Sbjct: 83 aaaactgggatggatgttgtagctattctaccatcattggtacttggccccttgatgcag 142
Query: 647 cctacagtaaatttgagcagcgaaatgatccttaaatatttcaaag 692
|| ||||| ||| |||||| |||| |||| |||||| ||||||
Sbjct: 143 ccaacagtgaatgcgagcagtaaaattctcctcaaatatctcaaag 188
>gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_L07 5', mRNA sequence
Length = 353
Score = 61.9 bits (31), Expect = 5e-008
Identities = 81/97 (83%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| | | |||| ||| ||| ||||||||||||||||||
Sbjct: 58 gtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtgaagctcctcctctcc 117
Query: 134 cggggccaatacgcggtccgcggcaccgtgcgcgacc 170
|| ||| ||| | |||||||||||||| |||||||
Sbjct: 118 cgcggc---tacaccgtccgcggcaccgtccgcgacc 151
>gb|BJ476181.1|BJ476181 BJ476181 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32j11 3', mRNA sequence
Length = 160
Score = 58.0 bits (29), Expect = 7e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 389 aaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtcttcatgtggagctgtg 448
||||||||| | ||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct: 159 aaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtcttcatgtgctgctgtg 100
Query: 449 t 449
|
Sbjct: 99 t 99
>gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C06
5-PRIME, mRNA sequence
Length = 495
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 76 gtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcccg 135
||||||||||||||| ||||||||||| || ||| ||| || ||||| |||||||||||
Sbjct: 45 gtgcgtgaccggcgccggcggcttcgtggcctcgtggctcgtcaagctgctcctctcccg 104
>gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006M19f, mRNA sequence
Length = 772
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||||||||||| ||||| ||| |||| ||| ||| || ||||| ||||||||
Sbjct: 65 cgtgtgcgtgaccggcggcggcgggttcatcgcctcgtggctcgtcaagctgctcctctc 124
Query: 133 ccggggc 139
|||||||
Sbjct: 125 ccggggc 131
>gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014O07f, mRNA sequence
Length = 821
Score = 54.0 bits (27), Expect = 1e-005
Identities = 74/89 (83%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| | | |||| ||| ||| ||||||||||||||||||
Sbjct: 80 gtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtgaagctcctcctctcc 139
Query: 134 cggggccaatacgcggtccgcggcaccgt 162
|| ||| ||||| |||| |||||||||
Sbjct: 140 cgcggc---tacgccgtccacggcaccgt 165
>gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P07f, mRNA sequence
Length = 821
Score = 54.0 bits (27), Expect = 1e-005
Identities = 74/89 (83%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| | | |||| ||| ||| ||||||||||||||||||
Sbjct: 80 gtgtgcgtcaccggcgccggcgggtacatcgcctcgtggctcgtgaagctcctcctctcc 139
Query: 134 cggggccaatacgcggtccgcggcaccgt 162
|| ||| ||||| |||| |||||||||
Sbjct: 140 cgcggc---tacgccgtccacggcaccgt 165
>gb|BI957946.1|BI957946 HVSMEn0012F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012F23f, mRNA sequence
Length = 479
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctc 130
||||||||||||||||| ||||||| | ||| |||| ||| || ||||||||||||
Sbjct: 88 gtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagctcctcctc 144
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,515
Number of Sequences: 312970
Number of extensions: 128515
Number of successful extensions: 33846
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33621
Number of HSP's gapped (non-prelim): 197
length of query: 1236
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1217
effective length of database: 169,188,109
effective search space: 205901928653
effective search space used: 205901928653
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)