BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG345113.2|BG345113 HVSMEg0018L21f Hordeum vulgare pre-a... 228 1e-058
gb|BQ135359.1|BQ135359 LP10179 Lemma/palea-enriched cDNA li... 228 1e-058
gb|AL504434.1|AL504434 AL504434 Hordeum vulgare Barke roots... 220 3e-056
gb|BE215414.1|BE215414 HV_CEb0006L18f Hordeum vulgare seedl... 220 3e-056
gb|AV913501.1|AV913501 AV913501 K. Sato unpublished cDNA li... 220 3e-056
gb|AV914542.1|AV914542 AV914542 K. Sato unpublished cDNA li... 220 3e-056
gb|AV915418.1|AV915418 AV915418 K. Sato unpublished cDNA li... 220 3e-056
gb|AV916476.1|AV916476 AV916476 K. Sato unpublished cDNA li... 220 3e-056
gb|AV916931.1|AV916931 AV916931 K. Sato unpublished cDNA li... 220 3e-056
gb|AV925778.1|AV925778 AV925778 K. Sato unpublished cDNA li... 220 3e-056
gb|BM816457.1|BM816457 HC114A03_SK.ab1 HC Hordeum vulgare s... 220 3e-056
gb|BM816458.1|BM816458 HC111F11_T3.ab1 HC Hordeum vulgare s... 220 3e-056
gb|BJ453090.1|BJ453090 BJ453090 K. Sato unpublished cDNA li... 220 3e-056
gb|BJ462824.1|BJ462824 BJ462824 K. Sato unpublished cDNA li... 220 3e-056
gb|BJ463089.1|BJ463089 BJ463089 K. Sato unpublished cDNA li... 220 3e-056
gb|BJ463813.1|BJ463813 BJ463813 K. Sato unpublished cDNA li... 220 3e-056
gb|BJ464862.1|BJ464862 BJ464862 K. Sato unpublished cDNA li... 220 3e-056
gb|BJ465500.1|BJ465500 BJ465500 K. Sato unpublished cDNA li... 220 3e-056
gb|BQ464007.1|BQ464007 HF01B12T HF Hordeum vulgare subsp. v... 220 3e-056
gb|BQ468808.1|BQ468808 HM02G12r HM Hordeum vulgare subsp. v... 220 3e-056
gb|BQ470416.1|BQ470416 HX02O18r HX Hordeum vulgare subsp. v... 220 3e-056
gb|BQ472861.1|BQ472861 HB01E09r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BQ472898.1|BQ472898 HB01C16r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BI780419.2|BI780419 EBem08_SQ001_A05_R embryo, 40 DPA, n... 220 3e-056
gb|BM099177.2|BM099177 EBes01_SQ002_H08_R embryo sac, 4-6 D... 220 3e-056
gb|BM372627.2|BM372627 EBpi05_SQ003_H21_R pistil, 8 DPA, no... 220 3e-056
gb|BQ767019.1|BQ767019 EBro08_SQ007_B24_R root, 3 week, dro... 220 3e-056
gb|BQ768123.1|BQ768123 EBro08_SQ010_C20_R root, 3 week, dro... 220 3e-056
gb|BU966811.1|BU966811 HB02G24r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BU969421.1|BU969421 HB11H20r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BU970733.1|BU970733 HB15I10r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BU971068.1|BU971068 HB16I06r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BU974098.1|BU974098 HB26O06r BC Hordeum vulgare subsp. v... 220 3e-056
gb|BU976026.1|BU976026 HA03A05r HA Hordeum vulgare subsp. v... 220 3e-056
gb|BU978000.1|BU978000 HA12G12r HA Hordeum vulgare subsp. v... 220 3e-056
gb|BU984404.1|BU984404 HF03N09r HF Hordeum vulgare subsp. v... 220 3e-056
gb|BU988739.1|BU988739 HF18I22r HF Hordeum vulgare subsp. v... 220 3e-056
gb|CA026356.1|CA026356 HZ55K23r HZ Hordeum vulgare subsp. v... 220 3e-056
gb|BG368067.2|BG368067 HVSMEi0015I13f Hordeum vulgare 20 DA... 214 2e-054
gb|AV915957.1|AV915957 AV915957 K. Sato unpublished cDNA li... 212 8e-054
gb|AV917415.1|AV917415 AV917415 K. Sato unpublished cDNA li... 212 8e-054
gb|AV916184.1|AV916184 AV916184 K. Sato unpublished cDNA li... 210 3e-053
gb|BJ463221.1|BJ463221 BJ463221 K. Sato unpublished cDNA li... 208 1e-052
gb|BU987244.1|BU987244 HF14D10r HF Hordeum vulgare subsp. v... 208 1e-052
gb|AV914569.1|AV914569 AV914569 K. Sato unpublished cDNA li... 206 5e-052
gb|BJ466464.1|BJ466464 BJ466464 K. Sato unpublished cDNA li... 206 5e-052
gb|AV916568.1|AV916568 AV916568 K. Sato unpublished cDNA li... 204 2e-051
gb|BQ465238.1|BQ465238 HU03A12r HU Hordeum vulgare subsp. v... 204 2e-051
gb|BF266874.3|BF266874 HV_CEa0016E19f Hordeum vulgare seedl... 200 3e-050
gb|AV908950.1|AV908950 AV908950 K. Sato unpublished cDNA li... 200 3e-050
gb|CD662370.1|CD662370 UCRHV18_01dg06_b1 Drought-stressed D... 198 1e-049
gb|BU995277.1|BU995277 HM09L24r HM Hordeum vulgare subsp. v... 196 4e-049
gb|BF265511.1|BF265511 HV_CEa0012H22f Hordeum vulgare seedl... 192 7e-048
gb|BJ450647.1|BJ450647 BJ450647 K. Sato unpublished cDNA li... 190 3e-047
gb|BI777072.2|BI777072 EBpi03_SQ001_N02_R pistil, 4 DPA, no... 190 3e-047
gb|BF260655.2|BF260655 HVSMEf0022J11f Hordeum vulgare seedl... 188 1e-046
gb|BQ759959.1|BQ759959 EBpi05_SQ004_P24_R pistil, 8 DPA, no... 188 1e-046
gb|AL504563.1|AL504563 AL504563 Hordeum vulgare Barke roots... 186 4e-046
gb|BQ756662.1|BQ756662 EBem09_SQ003_G06_R embryo, 1 Day ger... 180 3e-044
gb|BQ472888.1|BQ472888 HB01C18r BC Hordeum vulgare subsp. v... 178 1e-043
gb|BG415334.2|BG415334 HVSMEk0006B11f Hordeum vulgare testa... 176 4e-043
gb|CD663174.1|CD663174 UCRHV18_04ce01_b1 Drought-stressed D... 172 6e-042
gb|BE455757.3|BE455757 HVSMEg0019K14f Hordeum vulgare pre-a... 170 3e-041
gb|BQ768211.1|BQ768211 EBro08_SQ011_E06_R root, 3 week, dro... 165 2e-039
gb|CA022083.1|CA022083 HZ42B23r HZ Hordeum vulgare subsp. v... 153 6e-036
gb|BJ460641.1|BJ460641 BJ460641 K. Sato unpublished cDNA li... 147 4e-034
gb|BJ467538.1|BJ467538 BJ467538 K. Sato unpublished cDNA li... 141 2e-032
gb|BJ452714.1|BJ452714 BJ452714 K. Sato unpublished cDNA li... 139 9e-032
gb|BJ465544.1|BJ465544 BJ465544 K. Sato unpublished cDNA li... 133 6e-030
gb|AV930915.1|AV930915 AV930915 K. Sato unpublished cDNA li... 129 9e-029
gb|CD664083.1|CD664083 UCRHV18_07cf04_b1 Drought-stressed D... 129 9e-029
gb|AV918430.1|AV918430 AV918430 K. Sato unpublished cDNA li... 127 3e-028
gb|CA024129.1|CA024129 HZ48H03r HZ Hordeum vulgare subsp. v... 121 2e-026
gb|BF626281.2|BF626281 HVSMEa0018D19f Hordeum vulgare seedl... 111 2e-023
gb|AV914740.1|AV914740 AV914740 K. Sato unpublished cDNA li... 111 2e-023
gb|AV919838.1|AV919838 AV919838 K. Sato unpublished cDNA li... 111 2e-023
gb|BJ463677.1|BJ463677 BJ463677 K. Sato unpublished cDNA li... 111 2e-023
gb|BJ465581.1|BJ465581 BJ465581 K. Sato unpublished cDNA li... 111 2e-023
gb|BJ467847.1|BJ467847 BJ467847 K. Sato unpublished cDNA li... 111 2e-023
gb|BI776515.2|BI776515 EBpi05_SQ001_L02_R pistil, 8 DPA, no... 111 2e-023
gb|BJ462756.1|BJ462756 BJ462756 K. Sato unpublished cDNA li... 109 8e-023
gb|BG414947.1|BG414947 HVSMEk0004G07f Hordeum vulgare testa... 107 3e-022
gb|CA027296.1|CA027296 HZ58I03r HZ Hordeum vulgare subsp. v... 103 5e-021
gb|AL504107.1|AL504107 AL504107 Hordeum vulgare Barke roots... 100 8e-020
gb|BJ467678.1|BJ467678 BJ467678 K. Sato unpublished cDNA li... 98 3e-019
gb|AV918094.1|AV918094 AV918094 K. Sato unpublished cDNA li... 96 1e-018
gb|BG343008.2|BG343008 HVSMEg0001L02f Hordeum vulgare pre-a... 94 5e-018
gb|BG414900.2|BG414900 HVSMEk0004C18f Hordeum vulgare testa... 92 2e-017
gb|BG416689.2|BG416689 HVSMEk0014C03f Hordeum vulgare testa... 88 3e-016
gb|BE438107.1|BE438107 SFR010.H09F990519 ITEC SFR Barley Le... 86 1e-015
gb|BG416081.1|BG416081 HVSMEk0009L04f Hordeum vulgare testa... 86 1e-015
gb|BJ465636.1|BJ465636 BJ465636 K. Sato unpublished cDNA li... 82 2e-014
gb|BF629587.2|BF629587 HVSMEb0013G23f Hordeum vulgare seedl... 76 1e-012
gb|BF256695.2|BF256695 HVSMEf0010L18f Hordeum vulgare seedl... 76 1e-012
gb|AV921073.1|AV921073 AV921073 K. Sato unpublished cDNA li... 74 4e-012
gb|AV922638.1|AV922638 AV922638 K. Sato unpublished cDNA li... 74 4e-012
gb|BG415357.1|BG415357 HVSMEk0006C18f Hordeum vulgare testa... 70 7e-011
gb|BM816455.1|BM816455 HC107E02_SK.ab1 HC Hordeum vulgare s... 66 1e-009
gb|BM816456.1|BM816456 HC105H04_T3.ab1 HC Hordeum vulgare s... 66 1e-009
gb|BF065797.2|BF065797 HV_CEb0014A09f Hordeum vulgare seedl... 64 4e-009
gb|BF065820.2|BF065820 HV_CEb0014B09f Hordeum vulgare seedl... 64 4e-009
gb|CK125115.1|CK125115 BES1824106l23 BES1824 Hordeum vulgar... 62 2e-008
gb|BM816454.1|BM816454 HC107B04_SK.ab1 HC Hordeum vulgare s... 60 7e-008
gb|BG369191.2|BG369191 HVSMEi0023A16f Hordeum vulgare 20 DA... 58 3e-007
gb|BQ460468.1|BQ460468 HA09H22r HA Hordeum vulgare subsp. v... 56 1e-006
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 52 2e-005
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 52 2e-005
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 52 2e-005
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 52 2e-005
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 52 2e-005
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 52 2e-005
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 52 2e-005
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 52 2e-005
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 52 2e-005
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 52 2e-005
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 52 2e-005
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 52 2e-005
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 52 2e-005
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 52 2e-005
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 52 2e-005
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 52 2e-005
gb|AV921839.1|AV921839 AV921839 K. Sato unpublished cDNA li... 50 6e-005
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 50 6e-005
gb|BF260871.2|BF260871 HVSMEf0023C15f Hordeum vulgare seedl... 48 3e-004
gb|AV919760.1|AV919760 AV919760 K. Sato unpublished cDNA li... 46 0.001
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 46 0.001
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 46 0.001
gb|BI949012.1|BI949012 HVSMEl0012A16f Hordeum vulgare spike... 44 0.004
gb|BJ464179.1|BJ464179 BJ464179 K. Sato unpublished cDNA li... 44 0.004
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 44 0.004
gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA,... 42 0.016
gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA,... 42 0.016
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.016
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.016
gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA li... 42 0.016
gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA li... 42 0.016
gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA li... 42 0.016
gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA li... 42 0.016
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.016
gb|AW982894.2|AW982894 HVSMEg0004H22f Hordeum vulgare pre-a... 40 0.062
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.062
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.062
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 40 0.062
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.062
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.062
gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA li... 40 0.062
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.062
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.062
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.062
gb|BF630397.3|BF630397 HVSMEb0009B10f Hordeum vulgare seedl... 38 0.24
gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulg... 38 0.24
>gb|BG345113.2|BG345113 HVSMEg0018L21f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018L21f, mRNA sequence
Length = 843
Score = 228 bits (115), Expect = 1e-058
Identities = 166/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 271 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 212
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 211 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 152
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||||||||||
Sbjct: 151 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtccagggag 92
Query: 440 tac 442
|||
Sbjct: 91 tac 89
>gb|BQ135359.1|BQ135359 LP10179 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-179
similar to T.turgidum mRNA for ADP/ATP carrier,
Accession No. X80023.1, mRNA sequence
Length = 517
Score = 228 bits (115), Expect = 1e-058
Identities = 166/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 183 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 124
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 123 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 64
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||||||||||
Sbjct: 63 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtccagggag 4
Query: 440 tac 442
|||
Sbjct: 3 tac 1
>gb|AL504434.1|AL504434 AL504434 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05E12V 5', mRNA sequence
Length = 537
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 184 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 125
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 124 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 65
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 64 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 5
Query: 440 tac 442
|||
Sbjct: 4 tac 2
>gb|BE215414.1|BE215414 HV_CEb0006L18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006L18f, mRNA sequence
Length = 483
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 240 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 181
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 180 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 121
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 120 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 61
Query: 440 tac 442
|||
Sbjct: 60 tac 58
>gb|AV913501.1|AV913501 AV913501 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22e19 5', mRNA sequence
Length = 419
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 392 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 333
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 332 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 273
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 272 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 213
Query: 440 tac 442
|||
Sbjct: 212 tac 210
>gb|AV914542.1|AV914542 AV914542 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6n22 5', mRNA sequence
Length = 610
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 393
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 392 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 333
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 332 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 273
Query: 440 tac 442
|||
Sbjct: 272 tac 270
>gb|AV915418.1|AV915418 AV915418 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f08 5', mRNA sequence
Length = 639
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 266 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 207
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 206 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 147
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 146 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 87
Query: 440 tac 442
|||
Sbjct: 86 tac 84
>gb|AV916476.1|AV916476 AV916476 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17f23 5', mRNA sequence
Length = 514
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 318
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 317 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 258
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 257 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 198
Query: 440 tac 442
|||
Sbjct: 197 tac 195
>gb|AV916931.1|AV916931 AV916931 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c06 5', mRNA sequence
Length = 534
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 223 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 164
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 163 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 104
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 103 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 44
Query: 440 tac 442
|||
Sbjct: 43 tac 41
>gb|AV925778.1|AV925778 AV925778 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25m17 5', mRNA sequence
Length = 606
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 297
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 296 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 237
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 236 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 177
Query: 440 tac 442
|||
Sbjct: 176 tac 174
>gb|BM816457.1|BM816457 HC114A03_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114A03_SK.ab1 similar to ADP,ATP CARRIER
PROTEIN,ADP,ATP CARRIER PROTEIN 1,, mRNA sequence
Length = 894
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 573 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 514
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 513 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 454
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 453 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 394
Query: 440 tac 442
|||
Sbjct: 393 tac 391
>gb|BM816458.1|BM816458 HC111F11_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC111F11_T3.ab1 similar to ADP,ATP CARRIER
PROTEIN,ADP,ATP CARRIER PROTEIN 1,, mRNA sequence
Length = 868
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 326 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 267
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 266 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 207
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 206 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 147
Query: 440 tac 442
|||
Sbjct: 146 tac 144
>gb|BJ453090.1|BJ453090 BJ453090 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41k09 5', mRNA sequence
Length = 600
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 205
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 204 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 145
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 144 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 85
Query: 440 tac 442
|||
Sbjct: 84 tac 82
>gb|BJ462824.1|BJ462824 BJ462824 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24j06 5', mRNA sequence
Length = 645
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 560
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 559 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 500
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 499 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 440
Query: 440 tac 442
|||
Sbjct: 439 tac 437
>gb|BJ463089.1|BJ463089 BJ463089 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25l06 5', mRNA sequence
Length = 576
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 265
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 264 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 205
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 204 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 145
Query: 440 tac 442
|||
Sbjct: 144 tac 142
>gb|BJ463813.1|BJ463813 BJ463813 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30j19 5', mRNA sequence
Length = 520
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 342 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 283
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 282 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 223
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 222 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 163
Query: 440 tac 442
|||
Sbjct: 162 tac 160
>gb|BJ464862.1|BJ464862 BJ464862 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36f20 5', mRNA sequence
Length = 697
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 539 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 480
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 479 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 420
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 419 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 360
Query: 440 tac 442
|||
Sbjct: 359 tac 357
>gb|BJ465500.1|BJ465500 BJ465500 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29f20 5', mRNA sequence
Length = 588
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 277
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 276 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 217
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 216 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 157
Query: 440 tac 442
|||
Sbjct: 156 tac 154
>gb|BQ464007.1|BQ464007 HF01B12T HF Hordeum vulgare subsp. vulgare cDNA clone HF01B12
5-PRIME, mRNA sequence
Length = 684
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 492
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 491 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 432
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 431 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 372
Query: 440 tac 442
|||
Sbjct: 371 tac 369
>gb|BQ468808.1|BQ468808 HM02G12r HM Hordeum vulgare subsp. vulgare cDNA clone HM02G12
5-PRIME, mRNA sequence
Length = 592
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 483
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 482 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 423
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 422 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 363
Query: 440 tac 442
|||
Sbjct: 362 tac 360
>gb|BQ470416.1|BQ470416 HX02O18r HX Hordeum vulgare subsp. vulgare cDNA clone HX02O18
5-PRIME, mRNA sequence
Length = 640
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 246 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 187
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 186 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 127
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 126 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 67
Query: 440 tac 442
|||
Sbjct: 66 tac 64
>gb|BQ472861.1|BQ472861 HB01E09r BC Hordeum vulgare subsp. vulgare cDNA clone HB01E09
5-PRIME, mRNA sequence
Length = 614
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 243 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 184
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 183 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 124
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 123 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 64
Query: 440 tac 442
|||
Sbjct: 63 tac 61
>gb|BQ472898.1|BQ472898 HB01C16r BC Hordeum vulgare subsp. vulgare cDNA clone HB01C16
5-PRIME, mRNA sequence
Length = 626
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 604 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 545
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 544 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 485
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 484 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 425
Query: 440 tac 442
|||
Sbjct: 424 tac 422
>gb|BI780419.2|BI780419 EBem08_SQ001_A05_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ001_A05 5', mRNA sequence
Length = 417
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 214 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 155
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 154 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 95
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 94 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 35
Query: 440 tac 442
|||
Sbjct: 34 tac 32
>gb|BM099177.2|BM099177 EBes01_SQ002_H08_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ002_H08 5', mRNA sequence
Length = 644
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 574 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 515
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 514 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 455
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 454 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 395
Query: 440 tac 442
|||
Sbjct: 394 tac 392
>gb|BM372627.2|BM372627 EBpi05_SQ003_H21_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_H21 5', mRNA sequence
Length = 561
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 205
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 204 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 145
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 144 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 85
Query: 440 tac 442
|||
Sbjct: 84 tac 82
>gb|BQ767019.1|BQ767019 EBro08_SQ007_B24_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_B24 5', mRNA sequence
Length = 685
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 555 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 496
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 495 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 436
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 435 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 376
Query: 440 tac 442
|||
Sbjct: 375 tac 373
>gb|BQ768123.1|BQ768123 EBro08_SQ010_C20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_C20 5', mRNA sequence
Length = 597
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 437
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 436 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 377
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 376 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 317
Query: 440 tac 442
|||
Sbjct: 316 tac 314
>gb|BU966811.1|BU966811 HB02G24r BC Hordeum vulgare subsp. vulgare cDNA clone HB02G24
5-PRIME, mRNA sequence
Length = 606
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 310 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 251
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 250 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 191
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 190 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 131
Query: 440 tac 442
|||
Sbjct: 130 tac 128
>gb|BU969421.1|BU969421 HB11H20r BC Hordeum vulgare subsp. vulgare cDNA clone HB11H20
5-PRIME, mRNA sequence
Length = 503
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 379
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 378 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 319
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 318 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 259
Query: 440 tac 442
|||
Sbjct: 258 tac 256
>gb|BU970733.1|BU970733 HB15I10r BC Hordeum vulgare subsp. vulgare cDNA clone HB15I10
5-PRIME, mRNA sequence
Length = 529
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 219 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 160
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 159 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 100
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 99 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 40
Query: 440 tac 442
|||
Sbjct: 39 tac 37
>gb|BU971068.1|BU971068 HB16I06r BC Hordeum vulgare subsp. vulgare cDNA clone HB16I06
5-PRIME, mRNA sequence
Length = 410
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 219 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 160
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 159 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 100
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 99 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 40
Query: 440 tac 442
|||
Sbjct: 39 tac 37
>gb|BU974098.1|BU974098 HB26O06r BC Hordeum vulgare subsp. vulgare cDNA clone HB26O06
5-PRIME, mRNA sequence
Length = 564
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 330 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 271
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 270 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 211
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 210 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 151
Query: 440 tac 442
|||
Sbjct: 150 tac 148
>gb|BU976026.1|BU976026 HA03A05r HA Hordeum vulgare subsp. vulgare cDNA clone HA03A05
5-PRIME, mRNA sequence
Length = 584
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 201
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 200 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 141
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 140 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 81
Query: 440 tac 442
|||
Sbjct: 80 tac 78
>gb|BU978000.1|BU978000 HA12G12r HA Hordeum vulgare subsp. vulgare cDNA clone HA12G12
5-PRIME, mRNA sequence
Length = 648
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 346 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 287
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 286 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 227
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 226 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 167
Query: 440 tac 442
|||
Sbjct: 166 tac 164
>gb|BU984404.1|BU984404 HF03N09r HF Hordeum vulgare subsp. vulgare cDNA clone HF03N09
5-PRIME, mRNA sequence
Length = 525
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 215 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 156
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 155 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 96
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 95 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 36
Query: 440 tac 442
|||
Sbjct: 35 tac 33
>gb|BU988739.1|BU988739 HF18I22r HF Hordeum vulgare subsp. vulgare cDNA clone HF18I22
5-PRIME, mRNA sequence
Length = 574
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 492
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 491 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 432
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 431 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 372
Query: 440 tac 442
|||
Sbjct: 371 tac 369
>gb|CA026356.1|CA026356 HZ55K23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55K23
5-PRIME, mRNA sequence
Length = 497
Score = 220 bits (111), Expect = 3e-056
Identities = 165/183 (90%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 330 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 271
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 270 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 211
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 210 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 151
Query: 440 tac 442
|||
Sbjct: 150 tac 148
>gb|BG368067.2|BG368067 HVSMEi0015I13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015I13f, mRNA sequence
Length = 865
Score = 214 bits (108), Expect = 2e-054
Identities = 153/168 (91%)
Strand = Plus / Minus
Query: 275 atgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagacttg 334
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 478 atgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgacttg 419
Query: 335 agtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggca 394
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 418 agagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttggat 359
Query: 395 gccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||| || ||||| |||| |||||| || || |||||||||||||||
Sbjct: 358 gcctttgcgtcattggccagccttgtcctagcatagtccagggagtac 311
>gb|AV915957.1|AV915957 AV915957 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16n07 5', mRNA sequence
Length = 657
Score = 212 bits (107), Expect = 8e-054
Identities = 155/171 (90%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 656 acaatgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgac 597
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 596 ttgagagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttg 537
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
| ||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 536 gatgcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 486
>gb|AV917415.1|AV917415 AV917415 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18n03 5', mRNA sequence
Length = 642
Score = 212 bits (107), Expect = 8e-054
Identities = 155/171 (90%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 605 acaatgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgac 546
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 545 ttgagagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttg 486
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
| ||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 485 gatgcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 435
>gb|AV916184.1|AV916184 AV916184 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12a05 5', mRNA sequence
Length = 494
Score = 210 bits (106), Expect = 3e-053
Identities = 154/170 (90%)
Strand = Plus / Minus
Query: 273 caatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagact 332
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 494 caatgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgact 435
Query: 333 tgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttgg 392
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 434 tgagagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttgg 375
Query: 393 cagccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 374 atgcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 325
>gb|BJ463221.1|BJ463221 BJ463221 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26e22 5', mRNA sequence
Length = 552
Score = 208 bits (105), Expect = 1e-052
Identities = 153/169 (90%)
Strand = Plus / Minus
Query: 274 aatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagactt 333
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 552 aatgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgactt 493
Query: 334 gagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggc 393
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 492 gagagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttgga 433
Query: 394 agccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 432 tgcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 384
>gb|BU987244.1|BU987244 HF14D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF14D10
5-PRIME, mRNA sequence
Length = 662
Score = 208 bits (105), Expect = 1e-052
Identities = 165/184 (89%), Gaps = 1/184 (0%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 585 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 526
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 525 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 466
Query: 380 cctcc-tcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccaggga 438
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| |||||
Sbjct: 465 cctccancccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaaggga 406
Query: 439 gtac 442
||||
Sbjct: 405 gtac 402
>gb|AV914569.1|AV914569 AV914569 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p23 5', mRNA sequence
Length = 492
Score = 206 bits (104), Expect = 5e-052
Identities = 152/168 (90%)
Strand = Plus / Minus
Query: 275 atgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagacttg 334
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 492 atgattccaacacaggagatgttgaatccacggtaaagcccagcaataccatctgacttg 433
Query: 335 agtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttggca 394
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 432 agagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttggat 373
Query: 395 gccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 372 gcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 325
>gb|BJ466464.1|BJ466464 BJ466464 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32e03 3', mRNA sequence
Length = 699
Score = 206 bits (104), Expect = 5e-052
Identities = 165/184 (89%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 484 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 543
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 544 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 603
Query: 380 cctcctcccttggcagcc-ttcgcatcattagccaaccttgttctcgcgtagtccaggga 438
||||| ||||||| ||| || || ||||| |||| |||||| || || ||||| |||||
Sbjct: 604 cctccacccttggatgccttttgcgtcattggccagccttgtcctagcatagtcaaggga 663
Query: 439 gtac 442
||||
Sbjct: 664 gtac 667
>gb|AV916568.1|AV916568 AV916568 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17m15 5', mRNA sequence
Length = 570
Score = 204 bits (103), Expect = 2e-051
Identities = 154/171 (90%)
Strand = Plus / Minus
Query: 272 acaatgattccaacacaggagatgttaaatccacggtaaagcccagcaataccatcagac 331
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 531 acaatgattccaacacaggagatgttgaatccacggtaaagcccagcaatactatctgac 472
Query: 332 ttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttcacctcctcccttg 391
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 471 ttgagagtcttgcggtagacatcaacaaggccattgaactgcctttcacctccacccttg 412
Query: 392 gcagccttcgcatcattagccaaccttgttctcgcgtagtccagggagtac 442
| ||||| || ||||| |||| |||||| || || ||||| |||||||||
Sbjct: 411 gatgcctttgcgtcattggccagccttgtcctagcatagtcaagggagtac 361
>gb|BQ465238.1|BQ465238 HU03A12r HU Hordeum vulgare subsp. vulgare cDNA clone HU03A12
5-PRIME, mRNA sequence
Length = 583
Score = 204 bits (103), Expect = 2e-051
Identities = 163/183 (89%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 296 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 237
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 236 atcccatctgacttgagagtcttgcggtagacatcaacaaggacattgaactgcctttca 177
Query: 380 cctcctcccttggcagccttcgcatcattagccaaccttgttctcgcgtagtccagggag 439
||||| ||||||| ||||| || ||||| |||| |||||| || || ||||| ||||||
Sbjct: 176 cctccacccttggatgcctttgcgtcattggccagccttgtcctagcatagtcaagggag 117
Query: 440 tac 442
|||
Sbjct: 116 tac 114
>gb|BF266874.3|BF266874 HV_CEa0016E19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016E19f, mRNA sequence
Length = 837
Score = 200 bits (101), Expect = 3e-050
Identities = 125/133 (93%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 145 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 86
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 85 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 26
Query: 380 cctcctcccttgg 392
||||| |||||||
Sbjct: 25 cctccacccttgg 13
>gb|AV908950.1|AV908950 AV908950 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11a19 5', mRNA sequence
Length = 632
Score = 200 bits (101), Expect = 3e-050
Identities = 125/133 (93%)
Strand = Plus / Minus
Query: 260 agaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagcccagca 319
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 157 agaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagcccagca 98
Query: 320 ataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcctttca 379
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 97 ataccatctgacttgagagtcttgcggtagacatcaacaaggccattgaactgcctttca 38
Query: 380 cctcctcccttgg 392
||||| |||||||
Sbjct: 37 cctccacccttgg 25
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,460
Number of Sequences: 312970
Number of extensions: 42460
Number of successful extensions: 11744
Number of sequences better than 0.5: 152
Number of HSP's better than 0.5 without gapping: 151
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11543
Number of HSP's gapped (non-prelim): 186
length of query: 461
length of database: 175,134,539
effective HSP length: 18
effective length of query: 443
effective length of database: 169,501,079
effective search space: 75088977997
effective search space used: 75088977997
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)