BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.452
(1348 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623192.2|BF623192 HVSMEa0015C06f Hordeum vulgare seedl... 62 5e-008
gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedl... 62 5e-008
gb|CA023853.1|CA023853 HZ47J17r HZ Hordeum vulgare subsp. v... 62 5e-008
gb|BJ462089.1|BJ462089 BJ462089 K. Sato unpublished cDNA li... 56 3e-006
gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedl... 54 1e-005
gb|BJ464985.1|BJ464985 BJ464985 K. Sato unpublished cDNA li... 54 1e-005
gb|BJ464992.1|BJ464992 BJ464992 K. Sato unpublished cDNA li... 54 1e-005
gb|BQ462607.1|BQ462607 HI01H07T HI Hordeum vulgare subsp. v... 54 1e-005
gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. v... 54 1e-005
gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. v... 54 1e-005
gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. v... 54 1e-005
gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. v... 54 1e-005
gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedl... 52 5e-005
gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. v... 52 5e-005
gb|BJ473762.1|BJ473762 BJ473762 K. Sato unpublished cDNA li... 50 2e-004
gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. v... 50 2e-004
gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. v... 50 2e-004
gb|BM373450.2|BM373450 EBma04_SQ004_H19_R maternal, 10 DPA,... 48 8e-004
gb|BM375323.2|BM375323 EBem06_SQ002_P23_R embryo, 21 DPA, n... 46 0.003
gb|AV914683.1|AV914683 AV914683 K. Sato unpublished cDNA li... 44 0.012
gb|AV919775.1|AV919775 AV919775 K. Sato unpublished cDNA li... 44 0.012
gb|AV929540.1|AV929540 AV929540 K. Sato unpublished cDNA li... 44 0.012
gb|AV929541.1|AV929541 AV929541 K. Sato unpublished cDNA li... 44 0.012
gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike... 42 0.047
gb|BG416503.2|BG416503 HVSMEk0012K02f Hordeum vulgare testa... 42 0.047
gb|BQ463475.1|BQ463475 HI05G06r HI Hordeum vulgare subsp. v... 42 0.047
gb|BM443542.2|BM443542 EBro02_SQ005_J14_R root, 3 week, hyd... 42 0.047
gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, sal... 42 0.047
gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, sal... 42 0.047
gb|BU994831.1|BU994831 HM08F14r HM Hordeum vulgare subsp. v... 42 0.047
gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. v... 42 0.047
gb|BU995432.1|BU995432 HM10D21r HM Hordeum vulgare subsp. v... 42 0.047
gb|CA014046.1|CA014046 HT10D18r HT Hordeum vulgare subsp. v... 42 0.047
gb|CB880958.1|CB880958 HM08F14w HM Hordeum vulgare subsp. v... 42 0.047
gb|CB881559.1|CB881559 HM10C22w HM Hordeum vulgare subsp. v... 42 0.047
emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragme... 42 0.047
gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA li... 40 0.19
gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, dro... 40 0.19
gb|BU966937.1|BU966937 HB02N03r BC Hordeum vulgare subsp. v... 40 0.19
gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. v... 40 0.19
gb|BU999922.1|BU999922 HS16P03u HS Hordeum vulgare subsp. v... 40 0.19
gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. v... 40 0.19
gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedl... 38 0.73
gb|BE060879.3|BE060879 HVSMEg0013L07f Hordeum vulgare pre-a... 38 0.73
gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA li... 38 0.73
gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. v... 38 0.73
gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. v... 38 0.73
gb|BU976969.1|BU976969 HA10J24u HA Hordeum vulgare subsp. v... 38 0.73
gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. v... 38 0.73
gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. v... 38 0.73
gb|AU252274.1|AU252274 AU252274 salt-stressed barley root c... 38 0.73
gb|AU252281.1|AU252281 AU252281 salt-stressed barley root c... 38 0.73
gb|AV833420.1|AV833420 AV833420 K. Sato unpublished cDNA li... 36 2.9
gb|AV833891.1|AV833891 AV833891 K. Sato unpublished cDNA li... 36 2.9
gb|BF266815.2|BF266815 HV_CEa0016C07f Hordeum vulgare seedl... 36 2.9
gb|BE213876.2|BE213876 HV_CEb0001I09f Hordeum vulgare seedl... 36 2.9
gb|BI959662.1|BI959662 HVSMEn0020K15f Hordeum vulgare rachi... 36 2.9
gb|BM101087.1|BM101087 EBpi01_SQ002_N09_R pistil, 1 DPA, no... 36 2.9
gb|AV918424.1|AV918424 AV918424 K. Sato unpublished cDNA li... 36 2.9
gb|AV918574.1|AV918574 AV918574 K. Sato unpublished cDNA li... 36 2.9
gb|AV929991.1|AV929991 AV929991 K. Sato unpublished cDNA li... 36 2.9
gb|BJ462781.1|BJ462781 BJ462781 K. Sato unpublished cDNA li... 36 2.9
gb|BQ465503.1|BQ465503 HU03N06r HU Hordeum vulgare subsp. v... 36 2.9
gb|BQ663746.1|BQ663746 HU03N06u HU Hordeum vulgare subsp. v... 36 2.9
gb|BM368769.2|BM368769 EBem08_SQ004_I21_R embryo, 40 DPA, n... 36 2.9
gb|BU980372.1|BU980372 HA20H02r HA Hordeum vulgare subsp. v... 36 2.9
gb|BU980609.1|BU980609 HA21C14r HA Hordeum vulgare subsp. v... 36 2.9
gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. v... 36 2.9
gb|CV054293.1|CV054293 BNEL108h5 Barley EST endosperm libra... 36 2.9
gb|CV060041.1|CV060041 BNEL53g11 Barley EST endosperm libra... 36 2.9
gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex B... 36 2.9
>gb|BF623192.2|BF623192 HVSMEa0015C06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015C06f, mRNA sequence
Length = 790
Score = 61.9 bits (31), Expect = 5e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctcatcac 765
||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 115 gcgatgtctacagcttcggtgtggtgctgctggagctcgtcac 157
>gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010M14f, mRNA sequence
Length = 514
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||||||||
Sbjct: 418 tacagcttcggcgtggtgctgctggagctcatcac 452
>gb|CA023853.1|CA023853 HZ47J17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47J17
5-PRIME, mRNA sequence
Length = 611
Score = 61.9 bits (31), Expect = 5e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctcatcac 765
||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 328 gcgatgtctacagcttcggtgtggtgctgctggagctcgtcac 370
>gb|BJ462089.1|BJ462089 BJ462089 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21n09 3', mRNA sequence
Length = 721
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 725 gatgtctacagcttcggcgtggtgcttctgga 756
||||||||||||||||||||||| ||||||||
Sbjct: 489 gatgtctacagcttcggcgtggttcttctgga 458
>gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007F20f, mRNA sequence
Length = 847
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||| ||||
Sbjct: 156 tacagcttcggcgtggtgctgctggagctcgtcac 190
>gb|BJ464985.1|BJ464985 BJ464985 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36n12 5', mRNA sequence
Length = 508
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttct 753
||||||||||||||||||||||| |||||||
Sbjct: 108 gcgatgtctacagcttcggcgtgctgcttct 138
>gb|BJ464992.1|BJ464992 BJ464992 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36n23 5', mRNA sequence
Length = 282
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttct 753
||||||||||||||||||||||| |||||||
Sbjct: 87 gcgatgtctacagcttcggcgtgctgcttct 117
>gb|BQ462607.1|BQ462607 HI01H07T HI Hordeum vulgare subsp. vulgare cDNA clone HI01H07
5-PRIME, mRNA sequence
Length = 529
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttct 753
||||||||||||||||||||||| |||||||
Sbjct: 235 gcgatgtctacagcttcggcgtgctgcttct 265
>gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
5-PRIME, mRNA sequence
Length = 571
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||| ||||
Sbjct: 487 tacagcttcggcgtggtgctgctggagctcgtcac 521
>gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
3-PRIME, mRNA sequence
Length = 681
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||| ||||
Sbjct: 608 tacagcttcggcgtggtgctgctggagctcgtcac 574
>gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. vulgare cDNA clone HA10J24
5-PRIME, mRNA sequence
Length = 515
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||| ||||
Sbjct: 149 tacagcttcggcgtggtgctgctggagctcgtcac 183
>gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. vulgare cDNA clone HV14N17
5-PRIME, mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcac 765
|||||||||||||||||||| ||||||||| ||||
Sbjct: 431 tacagcttcggcgtggtgctgctggagctcgtcac 465
>gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006D16f, mRNA sequence
Length = 910
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctc 760
|||||||||||||||||||| |||||||||
Sbjct: 707 tacagcttcggcgtggtgctgctggagctc 736
>gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O21
5-PRIME, mRNA sequence
Length = 561
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctc 760
||||||||||| ||||||||||||||||||
Sbjct: 102 tacagcttcggggtggtgcttctggagctc 131
>gb|BJ473762.1|BJ473762 BJ473762 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16n17 3', mRNA sequence
Length = 744
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagct 759
|||| |||||||||||||| || ||||||||||||||
Sbjct: 683 gcgacgtctacagcttcggtgttgtgcttctggagct 647
>gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B07
5-PRIME, mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatc 763
|||||||||||||||||||| |||||||||||
Sbjct: 323 tacagcttcggcgtggtgctggtggagctcatc 355
>gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. vulgare cDNA clone HT02O23
5-PRIME, mRNA sequence
Length = 598
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatc 763
|||||||||||||||||||| |||||||||||
Sbjct: 178 tacagcttcggcgtggtgctggtggagctcatc 210
>gb|BM373450.2|BM373450 EBma04_SQ004_H19_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ004_H19 5', mRNA sequence
Length = 378
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 728 gtctacagcttcggcgtggtgcttctggagct 759
|||||||||||||||||| |||| ||||||||
Sbjct: 338 gtctacagcttcggcgtgctgctgctggagct 369
>gb|BM375323.2|BM375323 EBem06_SQ002_P23_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_P23 5', mRNA sequence
Length = 539
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 725 gatgtctacagcttcggcgtggtgcttctggagct 759
|||||||||||||| ||||| || |||||||||||
Sbjct: 126 gatgtctacagctttggcgtcgtccttctggagct 160
>gb|AV914683.1|AV914683 AV914683 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7i23 5', mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 736 cttcggcgtggtgcttctggagctcatcac 765
|||||| |||||||| ||||||||||||||
Sbjct: 81 cttcggggtggtgctcctggagctcatcac 110
>gb|AV919775.1|AV919775 AV919775 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7i23 3', mRNA sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 736 cttcggcgtggtgcttctggagctcatcac 765
|||||| |||||||| ||||||||||||||
Sbjct: 570 cttcggggtggtgctcctggagctcatcac 541
>gb|AV929540.1|AV929540 AV929540 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j23 3', mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctc 760
|||| |||||||||||||| |||||||| ||||||||
Sbjct: 552 gcgacgtctacagcttcggggtggtgctcatggagctc 515
>gb|AV929541.1|AV929541 AV929541 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j24 3', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.012
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctc 760
|||| |||||||||||||| |||||||| ||||||||
Sbjct: 551 gcgacgtctacagcttcggggtggtgctcatggagctc 514
>gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018F12f, mRNA sequence
Length = 873
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
|||||||||||||||||||| |||||||
Sbjct: 76 tacagcttcggcgtggtgctgatggagct 104
>gb|BG416503.2|BG416503 HVSMEk0012K02f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0012K02f, mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 738 tcggcgtggtgcttctggagctcat 762
||||||||||||| |||||||||||
Sbjct: 1 tcggcgtggtgctcctggagctcat 25
>gb|BQ463475.1|BQ463475 HI05G06r HI Hordeum vulgare subsp. vulgare cDNA clone HI05G06
5-PRIME, mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 720 agtgcgatgtctacagcttcggcgt 744
||||||||||||||||||| |||||
Sbjct: 541 agtgcgatgtctacagctttggcgt 565
>gb|BM443542.2|BM443542 EBro02_SQ005_J14_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_J14 5', mRNA sequence
Length = 362
Score = 42.1 bits (21), Expect = 0.047
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagct 759
||||||| ||||||||||| |||||| | ||||||||
Sbjct: 113 gcgatgtgtacagcttcggggtggtgatgctggagct 149
>gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N16 5', mRNA sequence
Length = 244
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
|||||||||||||||||||| |||||||
Sbjct: 122 tacagcttcggcgtggtgctgatggagct 150
>gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_C04 5', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.047
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctcatc 763
|||| ||||||||||||||||| || || || |||||||||
Sbjct: 184 gcgacgtctacagcttcggcgtcgtcctcctcgagctcatc 224
>gb|BU994831.1|BU994831 HM08F14r HM Hordeum vulgare subsp. vulgare cDNA clone HM08F14
5-PRIME, mRNA sequence
Length = 565
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||||||| |||| ||||||||
Sbjct: 137 tacagcttcggcgtgctgctcctggagct 165
>gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09N12
5-PRIME, mRNA sequence
Length = 410
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||| |||||||| ||||||||
Sbjct: 183 tacagcttcggggtggtgctgctggagct 211
>gb|BU995432.1|BU995432 HM10D21r HM Hordeum vulgare subsp. vulgare cDNA clone HM10D21
5-PRIME, mRNA sequence
Length = 485
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||||||| |||| ||||||||
Sbjct: 136 tacagcttcggcgtgctgctcctggagct 164
>gb|CA014046.1|CA014046 HT10D18r HT Hordeum vulgare subsp. vulgare cDNA clone HT10D18
5-PRIME, mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||| |||||||| ||||||||
Sbjct: 239 tacagcttcggggtggtgctgctggagct 267
>gb|CB880958.1|CB880958 HM08F14w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F14
3-PRIME, mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||||||| |||| ||||||||
Sbjct: 528 tacagcttcggcgtgctgctcctggagct 500
>gb|CB881559.1|CB881559 HM10C22w HM Hordeum vulgare subsp. vulgare cDNA clone HM10C22
3-PRIME, mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
||||||||||||||| |||| ||||||||
Sbjct: 529 tacagcttcggcgtgctgctcctggagct 501
>emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragment; clone MWG2041.rev
Length = 367
Score = 42.1 bits (21), Expect = 0.047
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagct 759
|||||||||||||||||| | ||||||||
Sbjct: 198 tacagcttcggcgtggtggtgctggagct 170
>gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd22d20, mRNA
sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.19
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcacg 766
||||||||||||||| |||| |||||| | ||||||
Sbjct: 564 tacagcttcggcgtgctgctgctggagatgatcacg 529
>gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_G15 5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctcat 762
|||| |||||| ||||||| || ||||| |||||||||||
Sbjct: 365 gcgacgtctacggcttcggggtcgtgctgctggagctcat 404
>gb|BU966937.1|BU966937 HB02N03r BC Hordeum vulgare subsp. vulgare cDNA clone HB02N03
5-PRIME, mRNA sequence
Length = 413
Score = 40.1 bits (20), Expect = 0.19
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagctcatcacgagga 770
||||||||||||||||||| || || || || ||||| || |||||||
Sbjct: 68 gcgatgtctacagcttcggggttgttctcctcgagctgatgacgagga 115
>gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
5-PRIME, mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.19
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcacg 766
||||||||||| |||||||| |||||| | ||||||
Sbjct: 165 tacagcttcggggtggtgctgctggagatgatcacg 200
>gb|BU999922.1|BU999922 HS16P03u HS Hordeum vulgare subsp. vulgare cDNA clone HS16P03
3-PRIME, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 725 gatgtctacagcttcggcgt 744
||||||||||||||||||||
Sbjct: 541 gatgtctacagcttcggcgt 522
>gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
3-PRIME, mRNA sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.19
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagctcatcacg 766
||||||||||| |||||||| |||||| | ||||||
Sbjct: 379 tacagcttcggggtggtgctgctggagatgatcacg 344
>gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008M23f, mRNA sequence
Length = 492
Score = 38.2 bits (19), Expect = 0.73
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 737 ttcggcgtggtgcttctggagct 759
|||||||||||||| ||||||||
Sbjct: 54 ttcggcgtggtgctgctggagct 76
>gb|BE060879.3|BE060879 HVSMEg0013L07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013L07f, mRNA sequence
Length = 692
Score = 38.2 bits (19), Expect = 0.73
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 215 tcgtcgcaccgctgccattggaa 237
|||||||||||||||||| ||||
Sbjct: 632 tcgtcgcaccgctgccatcggaa 610
>gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27f16 3', mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggag 757
||||||||||||||||| || ||||||
Sbjct: 618 tacagcttcggcgtggtcctcctggag 592
>gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M02
3-PRIME, mRNA sequence
Length = 601
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggag 757
|||||||||||||| ||||| ||||||
Sbjct: 461 tacagcttcggcgtcgtgctgctggag 435
>gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M04
3-PRIME, mRNA sequence
Length = 651
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggag 757
|||||||||||||| ||||| ||||||
Sbjct: 461 tacagcttcggcgtcgtgctgctggag 435
>gb|BU976969.1|BU976969 HA10J24u HA Hordeum vulgare subsp. vulgare cDNA clone HA10J24
3-PRIME, mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 739 cggcgtggtgcttctggagctcatcac 765
|||||||||||| ||||||||| ||||
Sbjct: 512 cggcgtggtgctgctggagctcgtcac 486
>gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. vulgare cDNA clone HT05J08
3-PRIME, mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggag 757
|||||||||||| ||||||| ||||||
Sbjct: 464 tacagcttcggcatggtgctgctggag 438
>gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G07
3-PRIME, mRNA sequence
Length = 674
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggag 757
|||||||||||||| ||||| ||||||
Sbjct: 461 tacagcttcggcgtcgtgctgctggag 435
>gb|AU252274.1|AU252274 AU252274 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-S13 similar to probable
serine/threonine protein kinase NAK, mRNA sequence
Length = 637
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggag 757
||||||||||||||||| || ||||||
Sbjct: 10 tacagcttcggcgtggtcctcctggag 36
>gb|AU252281.1|AU252281 AU252281 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-S19 similar to probable
serine/threonine protein kinase NAK, mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.73
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctggag 757
||||||||||||||||| || ||||||
Sbjct: 10 tacagcttcggcgtggtcctcctggag 36
>gb|AV833420.1|AV833420 AV833420 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8g23, mRNA sequence
Length = 540
Score = 36.2 bits (18), Expect = 2.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 728 gtctacagcttcggcgtggtgcttct 753
||||||||||| |||||||| |||||
Sbjct: 376 gtctacagctttggcgtggttcttct 401
>gb|AV833891.1|AV833891 AV833891 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags10e15, mRNA sequence
Length = 679
Score = 36.2 bits (18), Expect = 2.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 720 agtgcgatgtctacagcttcggcgtg 745
||||||| || |||||||||||||||
Sbjct: 444 agtgcgacgtgtacagcttcggcgtg 419
>gb|BF266815.2|BF266815 HV_CEa0016C07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0016C07f, mRNA sequence
Length = 847
Score = 36.2 bits (18), Expect = 2.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 736 cttcggcgtggtgcttctggag 757
||||||||||||||| ||||||
Sbjct: 362 cttcggcgtggtgctgctggag 383
>gb|BE213876.2|BE213876 HV_CEb0001I09f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001I09f, mRNA sequence
Length = 973
Score = 36.2 bits (18), Expect = 2.9
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 724 cgatgtctacagcttcggcgtggtgcttctggag 757
|||| |||||||||||||| |||| || ||||||
Sbjct: 28 cgatatctacagcttcggcatggttctactggag 61
>gb|BI959662.1|BI959662 HVSMEn0020K15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K15f, mRNA sequence
Length = 676
Score = 36.2 bits (18), Expect = 2.9
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 728 gtctacagcttcggcgtggtgcttctggagctcatcac 765
||||||||||||||||| | || ||||||||| ||||
Sbjct: 262 gtctacagcttcggcgtcctcctcctggagctcctcac 299
>gb|BM101087.1|BM101087 EBpi01_SQ002_N09_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_N09 5', mRNA sequence
Length = 325
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1104 aagcgaagcaagcaacaa 1121
||||||||||||||||||
Sbjct: 185 aagcgaagcaagcaacaa 168
>gb|AV918424.1|AV918424 AV918424 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21a02 3', mRNA sequence
Length = 639
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 728 gtctacagcttcggcgtg 745
||||||||||||||||||
Sbjct: 554 gtctacagcttcggcgtg 537
>gb|AV918574.1|AV918574 AV918574 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i06 3', mRNA sequence
Length = 635
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 728 gtctacagcttcggcgtg 745
||||||||||||||||||
Sbjct: 552 gtctacagcttcggcgtg 535
>gb|AV929991.1|AV929991 AV929991 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd17g05 3', mRNA sequence
Length = 677
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1218 tattcttccaataaaaca 1235
||||||||||||||||||
Sbjct: 12 tattcttccaataaaaca 29
>gb|BJ462781.1|BJ462781 BJ462781 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24f14 5', mRNA sequence
Length = 617
Score = 36.2 bits (18), Expect = 2.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 728 gtctacagcttcggcgtggtgcttct 753
||||||||||| |||||||| |||||
Sbjct: 395 gtctacagctttggcgtggttcttct 420
>gb|BQ465503.1|BQ465503 HU03N06r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N06
5-PRIME, mRNA sequence
Length = 630
Score = 36.2 bits (18), Expect = 2.9
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 724 cgatgtctacagcttcggcgtggtgcttctggag 757
|||||| ||||||| ||| || ||||||||||||
Sbjct: 492 cgatgtttacagctacggagttgtgcttctggag 459
>gb|BQ663746.1|BQ663746 HU03N06u HU Hordeum vulgare subsp. vulgare cDNA clone HU03N06
3-PRIME, mRNA sequence
Length = 637
Score = 36.2 bits (18), Expect = 2.9
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 724 cgatgtctacagcttcggcgtggtgcttctggag 757
|||||| ||||||| ||| || ||||||||||||
Sbjct: 146 cgatgtttacagctacggagttgtgcttctggag 179
>gb|BM368769.2|BM368769 EBem08_SQ004_I21_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_I21 5', mRNA sequence
Length = 511
Score = 36.2 bits (18), Expect = 2.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1085 gaagcacgcagatgaatggaag 1106
||||||||||||||| ||||||
Sbjct: 357 gaagcacgcagatgagtggaag 378
>gb|BU980372.1|BU980372 HA20H02r HA Hordeum vulgare subsp. vulgare cDNA clone HA20H02
5-PRIME, mRNA sequence
Length = 436
Score = 36.2 bits (18), Expect = 2.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1085 gaagcacgcagatgaatggaag 1106
||||||||||||||| ||||||
Sbjct: 73 gaagcacgcagatgagtggaag 94
>gb|BU980609.1|BU980609 HA21C14r HA Hordeum vulgare subsp. vulgare cDNA clone HA21C14
5-PRIME, mRNA sequence
Length = 446
Score = 36.2 bits (18), Expect = 2.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 763 cacgaggagaagggccag 780
||||||||||||||||||
Sbjct: 4 cacgaggagaagggccag 21
>gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. vulgare cDNA clone HA29B10
5-PRIME, mRNA sequence
Length = 569
Score = 36.2 bits (18), Expect = 2.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 731 tacagcttcggcgtggtgcttctgga 756
||||||||||| |||||||| |||||
Sbjct: 234 tacagcttcggggtggtgctgctgga 259
>gb|CV054293.1|CV054293 BNEL108h5 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL108h5 5' similar to nucleolar matrix
protein-related, mRNA sequence
Length = 485
Score = 36.2 bits (18), Expect = 2.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1085 gaagcacgcagatgaatggaag 1106
||||||||||||||| ||||||
Sbjct: 88 gaagcacgcagatgagtggaag 109
>gb|CV060041.1|CV060041 BNEL53g11 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL53g11 5' similar to nucleolar matrix
protein-related, mRNA sequence
Length = 485
Score = 36.2 bits (18), Expect = 2.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1085 gaagcacgcagatgaatggaag 1106
||||||||||||||| ||||||
Sbjct: 88 gaagcacgcagatgagtggaag 109
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
sequence
Length = 113510
Score = 36.2 bits (18), Expect = 2.9
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 731 tacagcttcggcgtggtgcttctggagctcatca 764
||||||||||||||| || | |||||| ||||||
Sbjct: 2495 tacagcttcggcgtgctggtgctggagatcatca 2462
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 141,009
Number of Sequences: 312970
Number of extensions: 141009
Number of successful extensions: 39900
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39795
Number of HSP's gapped (non-prelim): 105
length of query: 1348
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1329
effective length of database: 169,188,109
effective search space: 224850996861
effective search space used: 224850996861
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)