BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. v... 224 3e-057
gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 ... 208 2e-052
gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedl... 174 3e-042
gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. v... 174 3e-042
gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. v... 174 3e-042
gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. v... 170 4e-041
gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. v... 117 5e-025
gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. v... 117 5e-025
gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. v... 117 5e-025
gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. v... 86 2e-015
gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. v... 86 2e-015
gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, n... 82 3e-014
gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. v... 64 7e-009
gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA li... 62 3e-008
gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA li... 62 3e-008
gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA li... 62 3e-008
gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA li... 62 3e-008
gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA li... 62 3e-008
gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. v... 62 3e-008
gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. v... 62 3e-008
gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. v... 62 3e-008
gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. v... 62 3e-008
gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. v... 62 3e-008
gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. v... 62 3e-008
gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA li... 58 4e-007
gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA li... 48 4e-004
gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke devel... 46 0.002
gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa... 46 0.002
gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. v... 46 0.002
gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no... 46 0.002
gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-a... 40 0.10
gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA,... 40 0.10
gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. v... 38 0.40
>gb|BU975642.1|BU975642 HB31N05r BC Hordeum vulgare subsp. vulgare cDNA clone HB31N05
5-PRIME, mRNA sequence
Length = 617
Score = 224 bits (113), Expect = 3e-057
Identities = 373/460 (81%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 47 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 106
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 107 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 166
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 167 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 226
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 227 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcg 286
Query: 251 ctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctac 310
|| ||||| |||||||||||||||||||| || || ||||| | ||||||| | |||
Sbjct: 287 ctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctccaatagcgtac 346
Query: 311 gcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcg 370
|| || || || || || |||||| |||| ||| ||| || ||||| ||||| ||| |
Sbjct: 347 gcgcatctggcggcggcgcaggtgggcaccttcatgaagtttgaggacatgtcggacact 406
Query: 371 tcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcct 430
|| || ||||||||||| || || || |||| ||||| || | |||||||||||||||
Sbjct: 407 tcgtcgagccagggagggggccacacgtcggtgggcagcgcctcggtgccggagctgcct 466
Query: 431 cgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 467 cggctgcatgagaaagtgaggagctccatgttcttctgct 506
>gb|BE195976.3|BE195976 HVSMEh0091A07f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0091A07f, mRNA sequence
Length = 1009
Score = 208 bits (105), Expect = 2e-052
Identities = 371/460 (80%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 103 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 162
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 163 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 222
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 223 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 282
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 283 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcg 342
Query: 251 ctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctccagtgtgctac 310
|| ||||| |||||||||||||||||||| || || ||||| | ||||||| | |||
Sbjct: 343 ctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctccaatagcgtac 402
Query: 311 gcccacctcgctgcagcccaggtgagcacgttcctgagattggaggagatgtcagacgcg 370
|| || || || || || || ||| |||| ||| ||| || ||||| ||||| ||| |
Sbjct: 403 gcgcatctggcggcggcgcaagtgggcaccttcatgaagtttgaggacatgtcggacact 462
Query: 371 tcctccagccagggaggagggcatacctcggctggcagtgctcctgtgccggagctgcct 430
|| || ||||||||||| || || || |||| ||||| || | |||||||||||||||
Sbjct: 463 tcgtcgagccagggagggggccacacgtcggtgggcagcgcctcggtgccggagctgcct 522
Query: 431 cgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|| |||||||| ||||| | ||||||||||||||||||||
Sbjct: 523 cggctgcatgagaaagtgaagagctccatgttcttctgct 562
>gb|BF629097.2|BF629097 HVSMEb0009N21f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009N21f, mRNA sequence
Length = 727
Score = 174 bits (88), Expect = 3e-042
Identities = 240/291 (82%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 266 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 325
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 326 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 385
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 386 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 445
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 446 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtgcactcg 505
Query: 251 ctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcca 301
|| ||||| |||||||||||||||||||| || || ||||| | |||||||
Sbjct: 506 ctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctcca 556
Score = 48.1 bits (24), Expect = 4e-004
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 416 gtgccggagct-gcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||| ||||||| ||||||| ||||| | ||||| ||||||||||||||
Sbjct: 671 gtgccggagctngcctcgc-tgcatgaaaaagtgatgagcttcatgttcttctgct 725
>gb|BU974279.1|BU974279 HB27H05r BC Hordeum vulgare subsp. vulgare cDNA clone HB27H05
5-PRIME, mRNA sequence
Length = 461
Score = 174 bits (88), Expect = 3e-042
Identities = 240/291 (82%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 94 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 153
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 154 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 213
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 214 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 273
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 274 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcg 333
Query: 251 ctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcca 301
|| ||||| |||||||||||||||||||| || || ||||| | |||||||
Sbjct: 334 ctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctcca 384
>gb|BU985772.1|BU985772 HF08J07r HF Hordeum vulgare subsp. vulgare cDNA clone HF08J07
5-PRIME, mRNA sequence
Length = 493
Score = 174 bits (88), Expect = 3e-042
Identities = 240/291 (82%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 79 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 138
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 139 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 198
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 199 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 258
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 259 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcg 318
Query: 251 ctctcttacgtgtaccagaggagcacgacagccatctcagtggttgctcca 301
|| ||||| |||||||||||||||||||| || || ||||| | |||||||
Sbjct: 319 ctttcttatgtgtaccagaggagcacgacggcgatttcagtagctgctcca 369
>gb|BU969648.1|BU969648 HB12C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB12C12
5-PRIME, mRNA sequence
Length = 471
Score = 170 bits (86), Expect = 4e-041
Identities = 223/269 (82%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 188 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 247
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 248 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 307
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactat 190
|| ||||||||||||||||| ||||||||||||||||| || | ||||| || || ||
Sbjct: 308 tttgacttctacatgtgtgcgcatgctgggatgattggcacgtcgaggccaacgcattac 367
Query: 191 catgttctgcacgacgagataggtttcaatgccgacgagatgcaggagtttgttcattcg 250
||||||||||| || ||||| || |||| || |||||| | ||||||||||| || |||
Sbjct: 368 catgttctgcatgatgagattggcttcagcgcggacgagctccaggagtttgtccactcg 427
Query: 251 ctctcttacgtgtaccagaggagcacgac 279
|| ||||| ||||||||||||||||||||
Sbjct: 428 ctttcttatgtgtaccagaggagcacgac 456
>gb|BQ659639.1|BQ659639 HF01C16w HF Hordeum vulgare subsp. vulgare cDNA clone HF01C16
3-PRIME, mRNA sequence
Length = 623
Score = 117 bits (59), Expect = 5e-025
Identities = 200/247 (80%)
Strand = Plus / Minus
Query: 224 gacgagatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagcc 283
|||||| | ||||||||||| || ||||| ||||| |||||||||||||||||||| ||
Sbjct: 613 gacgagctccaggagtttgtccactcgctttcttatgtgtaccagaggagcacgacggcg 554
Query: 284 atctcagtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttc 343
|| ||||| | ||||||| | ||||| || || || || || |||||| |||| |||
Sbjct: 553 atttcagtagctgctccaatagcgtacgcgcatctggcggcggcgcaggtgggcaccttc 494
Query: 344 ctgagattggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggct 403
||| || ||||| ||||| ||| | || || ||||||||||| || || || ||||
Sbjct: 493 atgaagtttgaggacatgtcggacacttcgtcgagccagggagggggccacacgtcggtg 434
Query: 404 ggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttc 463
||||| || | ||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 433 ggcagcgcctcggtgccggagctgcctcggctgcatgagaaagtgaggagctccatgttc 374
Query: 464 ttctgct 470
|||||||
Sbjct: 373 ttctgct 367
>gb|BQ664937.1|BQ664937 HX01H11w HX Hordeum vulgare subsp. vulgare cDNA clone HX01H11
3-PRIME, mRNA sequence
Length = 669
Score = 117 bits (59), Expect = 5e-025
Identities = 200/247 (80%)
Strand = Plus / Minus
Query: 224 gacgagatgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagcc 283
|||||| | ||||||||||| || ||||| ||||| |||||||||||||||||||| ||
Sbjct: 644 gacgagctccaggagtttgtccactcgctttcttatgtgtaccagaggagcacgacggcg 585
Query: 284 atctcagtggttgctccagtgtgctacgcccacctcgctgcagcccaggtgagcacgttc 343
|| ||||| | ||||||| | ||||| || || || || || |||||| |||| |||
Sbjct: 584 atttcagtagctgctccaatagcgtacgcgcatctggcggcggcgcaggtgggcaccttc 525
Query: 344 ctgagattggaggagatgtcagacgcgtcctccagccagggaggagggcatacctcggct 403
||| || ||||| ||||| ||| | || || ||||||||||| || || || ||||
Sbjct: 524 atgaagtttgaggacatgtcggacacttcgtcgagccagggagggggccacacgtcggtg 465
Query: 404 ggcagtgctcctgtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttc 463
||||| || | ||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 464 ggcagcgcctcggtgccggagctgcctcggctgcatgagaaagtgaggagctccatgttc 405
Query: 464 ttctgct 470
|||||||
Sbjct: 404 ttctgct 398
>gb|BU986936.1|BU986936 HF13F11r HF Hordeum vulgare subsp. vulgare cDNA clone HF13F11
5-PRIME, mRNA sequence
Length = 664
Score = 117 bits (59), Expect = 5e-025
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttcagacggca 70
||||||||||| || ||||||||||| ||||||| ||||||| || || |||||
Sbjct: 502 cccaagttcacagtcattgttgctcagaagaaccatcacaccagatttttccagacaaat 561
Query: 71 tcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaac 130
|| ||||| ||||||| |||||| || |||||||||| |||| |||||||| ||||||
Sbjct: 562 tcgccagaaaatgttcctcctggtacggtggtggataaacaagtgtgccatcccaagaac 621
Query: 131 ttcgacttctacatgtgtgcacatgctgggatgattgg 168
|| ||||||||||||||||| |||||||||||||||||
Sbjct: 622 tttgacttctacatgtgtgcgcatgctgggatgattgg 659
>gb|CA001521.1|CA001521 HS17L21u HS Hordeum vulgare subsp. vulgare cDNA clone HS17L21
3-PRIME, mRNA sequence
Length = 574
Score = 85.7 bits (43), Expect = 2e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 437 gtgccggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgct 383
>gb|CB859991.1|CB859991 HI12E07w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E07
3-PRIME, mRNA sequence
Length = 521
Score = 85.7 bits (43), Expect = 2e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 437 gtgccggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgct 383
>gb|BM098707.2|BM098707 EBem08_SQ003_N14_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_N14 5', mRNA sequence
Length = 453
Score = 81.8 bits (41), Expect = 3e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 418 gccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 gccggagctgcctcggctgcatgagaaagtgaggagctccatgttcttctgct 53
>gb|CA022160.1|CA022160 HZ42F08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42F08
5-PRIME, mRNA sequence
Length = 520
Score = 63.9 bits (32), Expect = 7e-009
Identities = 138/171 (80%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagttctttca-gacggc 69
||||||||||| ||||||||||||| ||||| | |||||| ||||| ||||| | | |
Sbjct: 319 cccaagttcacactgattgttgctcagaagaatcaccacacaaagtt-tttcatgcctgg 377
Query: 70 atcaccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaa 129
||| || |||||||| | |||||| ||||| || |||| | || |||||||| | |||
Sbjct: 378 atctcctgacaatgtccctcctggcactgttgttgataatgctgtctgccatccaaggaa 437
Query: 130 cttcgacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
| ||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 438 ttatgacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 488
>gb|AV918025.1|AV918025 AV918025 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17h21 3', mRNA sequence
Length = 653
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 510 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 451
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 450 ttgtttctcca 440
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 607 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 561
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 325 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 271
>gb|AV918127.1|AV918127 AV918127 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p11 3', mRNA sequence
Length = 702
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 528 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 469
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 468 ttgtttctcca 458
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 625 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 579
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 343 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 289
>gb|AV918379.1|AV918379 AV918379 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 3', mRNA sequence
Length = 662
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 486 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 427
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 426 ttgtttctcca 416
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 583 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 537
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 301 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 247
>gb|AV931339.1|AV931339 AV931339 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19h01 3', mRNA sequence
Length = 607
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 516 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 457
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 456 ttgtttctcca 446
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 140 tacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
|||||||| || |||||||| |||||||| |||||||||||
Sbjct: 607 tacatgtgcgctcatgctggaatgattgggacaacaaggcc 567
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 331 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 277
>gb|AV937068.1|AV937068 AV937068 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9a21 3', mRNA sequence
Length = 587
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 535 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 476
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 475 ttgtttctcca 465
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 350 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 296
>gb|BQ472674.1|BQ472674 HB01M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB01M23
5-PRIME, mRNA sequence
Length = 581
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 475 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 416
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 415 ttgtttctcca 405
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 572 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 526
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 290 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 236
>gb|BU969384.1|BU969384 HB11G01r BC Hordeum vulgare subsp. vulgare cDNA clone HB11G01
5-PRIME, mRNA sequence
Length = 548
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 214 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 273
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 274 ttgtttctcca 284
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 117 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 163
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 399 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 453
>gb|BU971417.1|BU971417 HB17I20r BC Hordeum vulgare subsp. vulgare cDNA clone HB17I20
5-PRIME, mRNA sequence
Length = 502
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 189 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 248
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 249 ttgtttctcca 259
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 92 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 138
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 374 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 428
>gb|BU976900.1|BU976900 HA10I02u HA Hordeum vulgare subsp. vulgare cDNA clone HA10I02
3-PRIME, mRNA sequence
Length = 514
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 475 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 416
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 415 ttgtttctcca 405
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 290 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 236
>gb|CA031166.1|CA031166 HX09D06r HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
5-PRIME, mRNA sequence
Length = 647
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 251 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 310
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 311 ttgtttctcca 321
Score = 54.0 bits (27), Expect = 7e-006
Identities = 127/158 (80%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 24 tgattgttgctcaaaagaaccnccacaccaagttctttca-gacggcatcaccagacaat 82
||||||||||||| ||||| | |||||| ||||| ||||| | | | ||| || ||||||
Sbjct: 44 tgattgttgctcagaagaatcaccacacaaagtt-tttcatgcctggatctcctgacaat 102
Query: 83 gttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctac 142
|| | |||||| ||||| || |||| | || |||||||| | ||| | ||||| |||
Sbjct: 103 gtccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttac 162
Query: 143 atgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| || |||||||| |||||||| |||||||||||
Sbjct: 163 atgtgcgctcatgctggaatgattgggacaacaaggcc 200
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 436 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 490
>gb|CB874380.1|CB874380 HX05B15w HX Hordeum vulgare subsp. vulgare cDNA clone HX05B15
3-PRIME, mRNA sequence
Length = 626
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 472 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 413
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 412 ttgtttctcca 402
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 569 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 523
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 287 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 233
>gb|CB875735.1|CB875735 HX09D06w HX Hordeum vulgare subsp. vulgare cDNA clone HX09D06
3-PRIME, mRNA sequence
Length = 674
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 520 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 461
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 460 ttgtttctcca 450
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 617 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 571
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 335 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 281
>gb|CB875995.1|CB875995 HX09P10w HX Hordeum vulgare subsp. vulgare cDNA clone HX09P10
3-PRIME, mRNA sequence
Length = 626
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 472 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 413
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 412 ttgtttctcca 402
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 134 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct: 569 gacttttacatgtgcgctcatgctggaatgattgggacaacaaggcc 523
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 287 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 233
>gb|CB876232.1|CB876232 HX10K21w HX Hordeum vulgare subsp. vulgare cDNA clone HX10K21
3-PRIME, mRNA sequence
Length = 584
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 536 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 477
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 476 ttgtttctcca 466
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 351 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 297
>gb|CB876294.1|CB876294 HX10N18w HX Hordeum vulgare subsp. vulgare cDNA clone HX10N18
3-PRIME, mRNA sequence
Length = 676
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 519 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 460
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 459 ttgtttctcca 449
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 334 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 280
>gb|CB876456.1|CB876456 HX11F07w HX Hordeum vulgare subsp. vulgare cDNA clone HX11F07
3-PRIME, mRNA sequence
Length = 641
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 231 tgcaggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcag 290
||||||| |||| |||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct: 429 tgcaggatcttgtgcattcgctctcttatgtgtaccaaaggagcacaacagcaatatcag 370
Query: 291 tggttgctcca 301
| ||| |||||
Sbjct: 369 ttgtttctcca 359
Score = 54.0 bits (27), Expect = 7e-006
Identities = 127/158 (80%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 24 tgattgttgctcaaaagaaccnccacaccaagttctttca-gacggcatcaccagacaat 82
||||||||||||| ||||| | |||||| ||||| ||||| | | | ||| || ||||||
Sbjct: 636 tgattgttgctcagaagaatcaccacacaaagtt-tttcatgcctggatctcctgacaat 578
Query: 83 gttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctac 142
|| | |||||| ||||| || |||| | || |||||||| | ||| | ||||| |||
Sbjct: 577 gtccctcctggcactgttgttgataatgctgtctgccatccaaggaattatgacttttac 518
Query: 143 atgtgtgcacatgctgggatgattggaacaacaaggcc 180
||||| || |||||||| |||||||| |||||||||||
Sbjct: 517 atgtgcgctcatgctggaatgattgggacaacaaggcc 480
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 244 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 190
>gb|BJ473951.1|BJ473951 BJ473951 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal17o03 3', mRNA sequence
Length = 524
Score = 58.0 bits (29), Expect = 4e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 434 ctgcatgacaaagtcaggagctccatgttcttctgct 470
|||||||| ||||| ||||||||||||||||||||||
Sbjct: 522 ctgcatgagaaagtgaggagctccatgttcttctgct 486
>gb|AV917119.1|AV917119 AV917119 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20n15 5', mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 4e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaaccnccacaccaagtt 57
||||||||||| ||||||||||||| ||||| | |||||| |||||
Sbjct: 484 cccaagttcacactgattgttgctcagaagaatcaccacacaaagtt 530
>gb|AL510973.1|AL510973 AL510973 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J11u 3',
mRNA sequence
Length = 469
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 373 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 319
>gb|BG417822.1|BG417822 HVSMEk0019K06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0019K06f, mRNA sequence
Length = 816
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 106 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 160
>gb|BQ660859.1|BQ660859 HI05M20u HI Hordeum vulgare subsp. vulgare cDNA clone HI05M20
3-PRIME, mRNA sequence
Length = 407
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 357 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 303
>gb|BM372523.2|BM372523 EBpi05_SQ003_D09_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_D09 5', mRNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 416 gtgccggagctgcctcgcctgcatgacaaagtcaggagctccatgttcttctgct 470
|||| |||||||||||| || ||||| |||||| | ||| ||||||||||||||
Sbjct: 106 gtgcaggagctgcctcgtctccatgagaaagtccgcagcagcatgttcttctgct 160
>gb|BG343570.1|BG343570 HVSMEg0006G18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006G18f, mRNA sequence
Length = 1070
Score = 40.1 bits (20), Expect = 0.10
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 cccaagttcactgtgattgttgctcaaaagaa 42
||||||||||| ||||||||||||| |||||
Sbjct: 616 cccaagttcacactgattgttgctcagaagaa 647
>gb|BM374740.1|BM374740 EBma05_SQ002_K14_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_K14 5', mRNA sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 451 gagctccatgttcttctgct 470
||||||||||||||||||||
Sbjct: 1 gagctccatgttcttctgct 20
>gb|BQ462861.1|BQ462861 HI02D22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02D22
5-PRIME, mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.40
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 242 gttcattcgctctcttacgtgtaccagaggagcac 276
|||| |||||| || || |||||||||||||||||
Sbjct: 301 gttctttcgctttcctatgtgtaccagaggagcac 335
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,529
Number of Sequences: 312970
Number of extensions: 68529
Number of successful extensions: 20581
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20488
Number of HSP's gapped (non-prelim): 93
length of query: 744
length of database: 175,134,539
effective HSP length: 19
effective length of query: 725
effective length of database: 169,188,109
effective search space: 122661379025
effective search space used: 122661379025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)