BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ462901.1|BJ462901 BJ462901 K. Sato unpublished cDNA li... 333 6e-090
gb|BJ465698.1|BJ465698 BJ465698 K. Sato unpublished cDNA li... 333 6e-090
gb|BQ465451.1|BQ465451 HU03K22r HU Hordeum vulgare subsp. v... 325 1e-087
gb|BQ468586.1|BQ468586 HM01K21T HM Hordeum vulgare subsp. v... 325 1e-087
gb|BM369221.2|BM369221 EBem07_SQ002_P07_R embryo, 28 DPA, n... 325 1e-087
gb|BQ767461.1|BQ767461 EBro08_SQ008_P21_R root, 3 week, dro... 325 1e-087
gb|BU978501.1|BU978501 HA13G18r HA Hordeum vulgare subsp. v... 325 1e-087
gb|BU987862.1|BU987862 HF15P17r HF Hordeum vulgare subsp. v... 325 1e-087
gb|CA008650.1|CA008650 HU11K12r HU Hordeum vulgare subsp. v... 325 1e-087
gb|CV053736.1|CV053736 BNEL102f2 Barley EST endosperm libra... 325 1e-087
gb|CV057503.1|CV057503 BNEL28f10 Barley EST endosperm libra... 325 1e-087
gb|CK124049.1|CK124049 BES1824106k11 BES1824 Hordeum vulgar... 325 1e-087
gb|BF256325.3|BF256325 HVSMEf0009O04f Hordeum vulgare seedl... 317 3e-085
gb|CV064220.1|CV064220 BNEL99d6 Barley EST endosperm librar... 317 3e-085
gb|AV919906.1|AV919906 AV919906 K. Sato unpublished cDNA li... 315 1e-084
gb|BU979011.1|BU979011 HA14O12r HA Hordeum vulgare subsp. v... 315 1e-084
gb|AV915482.1|AV915482 AV915482 K. Sato unpublished cDNA li... 311 2e-083
gb|CK124732.1|CK124732 BES1824110c24 BES1824 Hordeum vulgar... 307 3e-082
gb|AV921307.1|AV921307 AV921307 K. Sato unpublished cDNA li... 303 5e-081
gb|AV920582.1|AV920582 AV920582 K. Sato unpublished cDNA li... 299 8e-080
gb|AV922365.1|AV922365 AV922365 K. Sato unpublished cDNA li... 297 3e-079
gb|BU979185.1|BU979185 HA15G09r HA Hordeum vulgare subsp. v... 297 3e-079
gb|BU985492.1|BU985492 HF07K06r HF Hordeum vulgare subsp. v... 295 1e-078
gb|BM375283.2|BM375283 EBem06_SQ002_O02_R embryo, 21 DPA, n... 291 2e-077
gb|AV914807.1|AV914807 AV914807 K. Sato unpublished cDNA li... 289 8e-077
gb|BQ754168.1|BQ754168 EBca01_SQ003_B03_R carpel, pre-anthe... 285 1e-075
gb|BM098583.2|BM098583 EBem08_SQ003_H22_R embryo, 40 DPA, n... 283 5e-075
gb|BQ661047.1|BQ661047 HM01K21w HM Hordeum vulgare subsp. v... 281 2e-074
gb|AV916180.1|AV916180 AV916180 K. Sato unpublished cDNA li... 280 7e-074
gb|AJ436577.1|AJ436577 AJ436577 S00002 Hordeum vulgare subs... 280 7e-074
gb|BQ663711.1|BQ663711 HU03K22u HU Hordeum vulgare subsp. v... 280 7e-074
gb|CB859928.1|CB859928 HI12A14w HI Hordeum vulgare subsp. v... 278 3e-073
gb|BQ759553.1|BQ759553 EBpi01_SQ004_K20_R pistil, 1 DPA, no... 274 5e-072
gb|CA005247.1|CA005247 HU11K12u HU Hordeum vulgare subsp. v... 264 4e-069
gb|BG343934.1|BG343934 HVSMEg0007C15f Hordeum vulgare pre-a... 248 3e-064
gb|AJ436578.1|AJ436578 AJ436578 S00002 Hordeum vulgare subs... 246 1e-063
gb|BU984645.1|BU984645 HF04I21r HF Hordeum vulgare subsp. v... 232 2e-059
gb|AJ463393.1|AJ463393 AJ463393 S00002 Hordeum vulgare subs... 226 1e-057
gb|AL507451.1|AL507451 AL507451 Hordeum vulgare Barke devel... 220 6e-056
gb|BE194239.3|BE194239 HVSMEh0084M12f Hordeum vulgare 5-45 ... 208 2e-052
gb|AJ463394.1|AJ463394 AJ463394 S00002 Hordeum vulgare subs... 196 9e-049
gb|BG418405.2|BG418405 HVSMEk0022J09f Hordeum vulgare testa... 192 1e-047
gb|AL510697.1|AL510697 AL510697 Hordeum vulgare Barke devel... 153 1e-035
gb|BM376533.1|BM376533 EBem05_SQ002_I01_R embryo, 14 DPA, n... 117 6e-025
gb|AL503014.1|AL503014 AL503014 Hordeum vulgare Barke roots... 103 1e-020
gb|BM373007.1|BM373007 EBma04_SQ002_L14_R maternal, 10 DPA,... 86 2e-015
gb|BQ758870.1|BQ758870 EBma07_SQ003_G02_R maternal, 21 DPA,... 86 2e-015
gb|BU998743.1|BU998743 HI12A14r HI Hordeum vulgare subsp. v... 86 2e-015
gb|BU990744.1|BU990744 HF25O23r HF Hordeum vulgare subsp. v... 78 6e-013
gb|BF255423.3|BF255423 HVSMEf0006N03f Hordeum vulgare seedl... 44 0.008
gb|BU972986.1|BU972986 HB23G05r BC Hordeum vulgare subsp. v... 44 0.008
gb|AL500854.1|AL500854 AL500854 Hordeum vulgare Barke roots... 40 0.12
gb|AL501662.1|AL501662 AL501662 Hordeum vulgare Barke roots... 40 0.12
gb|BF260639.1|BF260639 HVSMEf0022I18f Hordeum vulgare seedl... 40 0.12
gb|BF258154.2|BF258154 HVSMEf0014P03f Hordeum vulgare seedl... 40 0.12
gb|BE196482.2|BE196482 HVSMEh0092G18f Hordeum vulgare 5-45 ... 40 0.12
gb|BI950820.1|BI950820 HVSMEl0023F02f Hordeum vulgare spike... 40 0.12
gb|BI951629.1|BI951629 HVSMEm0001L05f Hordeum vulgare green... 40 0.12
gb|BF267019.2|BF267019 HV_CEa0016L09f Hordeum vulgare seedl... 40 0.12
gb|BE215916.2|BE215916 HV_CEb0008N10f Hordeum vulgare seedl... 40 0.12
gb|BF065928.2|BF065928 HV_CEb0014G03f Hordeum vulgare seedl... 40 0.12
gb|BI958906.1|BI958906 HVSMEn0017C12f Hordeum vulgare rachi... 40 0.12
gb|BF627040.3|BF627040 HVSMEb0002C08f Hordeum vulgare seedl... 40 0.12
gb|BG414240.2|BG414240 HVSMEk0002C14f Hordeum vulgare testa... 40 0.12
gb|BF065952.2|BF065952 HV_CEb0014H03f Hordeum vulgare seedl... 40 0.12
gb|BQ459081.1|BQ459081 HA02F22r HA Hordeum vulgare subsp. v... 40 0.12
gb|BQ662797.1|BQ662797 HS04D17u HS Hordeum vulgare subsp. v... 40 0.12
gb|BQ664823.1|BQ664823 HX01A10w HX Hordeum vulgare subsp. v... 40 0.12
gb|BI779877.2|BI779877 EBem07_SQ001_G03_R embryo, 28 DPA, n... 40 0.12
gb|BM099475.2|BM099475 EBes01_SQ003_F17_R embryo sac, 4-6 D... 40 0.12
gb|BQ758706.1|BQ758706 EBma07_SQ002_G15_R maternal, 21 DPA,... 40 0.12
gb|BQ763168.1|BQ763168 EBro02_SQ007_N10_R root, 3 week, hyd... 40 0.12
gb|BQ763179.1|BQ763179 EBro02_SQ007_P10_R root, 3 week, hyd... 40 0.12
gb|BQ764017.1|BQ764017 EBro03_SQ006_E03_R root, 3 week, wat... 40 0.12
gb|BQ764018.1|BQ764018 EBro03_SQ006_E04_R root, 3 week, wat... 40 0.12
gb|BU976825.1|BU976825 HA10G03u HA Hordeum vulgare subsp. v... 40 0.12
gb|BU983585.1|BU983585 HA30D13r HA Hordeum vulgare subsp. v... 40 0.12
gb|CA007673.1|CA007673 HU08K21r HU Hordeum vulgare subsp. v... 40 0.12
gb|CA008554.1|CA008554 HU11F07r HU Hordeum vulgare subsp. v... 40 0.12
gb|CA020420.1|CA020420 HZ36D23r HZ Hordeum vulgare subsp. v... 40 0.12
gb|CA020794.1|CA020794 HZ37L20r HZ Hordeum vulgare subsp. v... 40 0.12
gb|CA021266.1|CA021266 HZ39J14r HZ Hordeum vulgare subsp. v... 40 0.12
gb|CA023254.1|CA023254 HZ45K24r HZ Hordeum vulgare subsp. v... 40 0.12
gb|AL501273.1|AL501273 AL501273 Hordeum vulgare Barke roots... 38 0.47
gb|AL503476.1|AL503476 AL503476 Hordeum vulgare Barke roots... 38 0.47
gb|BF630341.2|BF630341 HVSMEb0008M19f Hordeum vulgare seedl... 38 0.47
gb|BG343319.1|BG343319 HVSMEg0005G12f Hordeum vulgare pre-a... 38 0.47
gb|BF265043.2|BF265043 HV_CEa0011B21f Hordeum vulgare seedl... 38 0.47
gb|BE195901.3|BE195901 HVSMEh0090N09f Hordeum vulgare 5-45 ... 38 0.47
gb|AV922754.1|AV922754 AV922754 K. Sato unpublished cDNA li... 38 0.47
gb|AV927471.1|AV927471 AV927471 K. Sato unpublished cDNA li... 38 0.47
gb|BJ463416.1|BJ463416 BJ463416 K. Sato unpublished cDNA li... 38 0.47
gb|BJ464477.1|BJ464477 BJ464477 K. Sato unpublished cDNA li... 38 0.47
gb|BM376227.2|BM376227 EBma01_SQ002_L16_R maternal, 4 DPA, ... 38 0.47
gb|BQ764983.1|BQ764983 EBca01_SQ005_O09_R carpel, pre-anthe... 38 0.47
gb|BU979129.1|BU979129 HA15D20r HA Hordeum vulgare subsp. v... 38 0.47
gb|BU995631.1|BU995631 HM10N07r HM Hordeum vulgare subsp. v... 38 0.47
gb|BU996886.1|BU996886 HI06D08r HI Hordeum vulgare subsp. v... 38 0.47
gb|CA028662.1|CA028662 HZ62N06r HZ Hordeum vulgare subsp. v... 38 0.47
gb|CA029399.1|CA029399 HZ65B16r HZ Hordeum vulgare subsp. v... 38 0.47
>gb|BJ462901.1|BJ462901 BJ462901 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24n10 5', mRNA sequence
Length = 534
Score = 333 bits (168), Expect = 6e-090
Identities = 383/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 522 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 463
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 462 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 403
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 402 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 343
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 342 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 283
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 282 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 223
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 222 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 163
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| || ||||||||||| ||
Sbjct: 162 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcaccagcgccaccgggg 103
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 102 tcttcttcttctccgtctccgtgtcgctccccat 69
>gb|BJ465698.1|BJ465698 BJ465698 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24n10 3', mRNA sequence
Length = 598
Score = 333 bits (168), Expect = 6e-090
Identities = 383/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 78 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 137
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 138 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 197
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 198 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 257
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 258 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 317
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 318 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 377
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 378 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 437
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| || ||||||||||| ||
Sbjct: 438 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcaccagcgccaccgggg 497
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 498 tcttcttcttctccgtctccgtgtcgctccccat 531
>gb|BQ465451.1|BQ465451 HU03K22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03K22
5-PRIME, mRNA sequence
Length = 588
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 522 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 463
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 462 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 403
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 402 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 343
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 342 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 283
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 282 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 223
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 222 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 163
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 162 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 103
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 102 tcttcttcttctccgtctccgtgtcgctccccat 69
>gb|BQ468586.1|BQ468586 HM01K21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01K21
5-PRIME, mRNA sequence
Length = 581
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 481 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 422
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 421 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 362
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 361 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 302
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 301 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 242
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 241 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 182
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 181 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 122
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 121 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 62
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 61 tcttcttcttctccgtctccgtgtcgctccccat 28
>gb|BM369221.2|BM369221 EBem07_SQ002_P07_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ002_P07 5', mRNA sequence
Length = 534
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 520 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 461
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 460 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 401
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 400 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 341
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 340 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 281
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 280 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 221
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 220 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 161
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 160 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 101
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 100 tcttcttcttctccgtctccgtgtcgctccccat 67
>gb|BQ767461.1|BQ767461 EBro08_SQ008_P21_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_P21 5', mRNA sequence
Length = 610
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 507 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 448
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 447 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 388
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 387 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 328
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 327 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 268
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 267 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 208
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 207 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 148
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 147 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 88
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 87 tcttcttcttctccgtctccgtgtcgctccccat 54
>gb|BU978501.1|BU978501 HA13G18r HA Hordeum vulgare subsp. vulgare cDNA clone HA13G18
5-PRIME, mRNA sequence
Length = 606
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 473 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 414
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 413 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 354
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 353 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 294
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 293 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 234
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 233 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 174
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 173 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 114
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 113 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 54
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 53 tcttcttcttctccgtctccgtgtcgctccccat 20
>gb|BU987862.1|BU987862 HF15P17r HF Hordeum vulgare subsp. vulgare cDNA clone HF15P17
5-PRIME, mRNA sequence
Length = 629
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 510 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 451
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 450 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 391
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 390 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 331
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 330 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 271
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 270 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 211
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 210 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 151
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 150 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 91
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 90 tcttcttcttctccgtctccgtgtcgctccccat 57
>gb|CA008650.1|CA008650 HU11K12r HU Hordeum vulgare subsp. vulgare cDNA clone HU11K12
5-PRIME, mRNA sequence
Length = 622
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 489 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 430
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 429 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 370
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 369 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 310
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 309 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 250
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 249 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 190
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 189 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 130
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 129 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 70
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 69 tcttcttcttctccgtctccgtgtcgctccccat 36
>gb|CV053736.1|CV053736 BNEL102f2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL102f2 5' similar to contains EST
AU031225, mRNA sequence
Length = 698
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 473 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 414
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 413 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 354
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 353 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 294
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 293 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 234
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 233 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 174
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 173 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 114
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 113 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 54
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 53 tcttcttcttctccgtctccgtgtcgctccccat 20
>gb|CV057503.1|CV057503 BNEL28f10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL28f10 5' similar to contains EST
AU031225, mRNA sequence
Length = 606
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 473 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 414
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 413 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 354
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 353 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 294
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 293 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 234
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 233 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 174
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 173 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 114
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 113 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 54
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 53 tcttcttcttctccgtctccgtgtcgctccccat 20
>gb|CK124049.1|CK124049 BES1824106k11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K116 5-PRIME, mRNA sequence
Length = 794
Score = 325 bits (164), Expect = 1e-087
Identities = 382/454 (84%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 518 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 459
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 458 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 399
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 398 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 339
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 338 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 279
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 278 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 219
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 218 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 159
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 158 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 99
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 98 tcttcttcttctccgtctccgtgtcgctccccat 65
>gb|BF256325.3|BF256325 HVSMEf0009O04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009O04f, mRNA sequence
Length = 763
Score = 317 bits (160), Expect = 3e-085
Identities = 381/454 (83%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 504 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 445
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 444 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 385
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||| ||||| ||||||||||||| ||||
Sbjct: 384 cgcagcaggtgggcctcttggtagtacccgcggttgcaagctcctcttttgatgtcacat 325
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 324 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 265
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 264 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 205
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 204 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 145
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 144 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 85
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 84 tcttcttcttctccgtctccgtgtcgctccccat 51
>gb|CV064220.1|CV064220 BNEL99d6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL99d6 5' similar to contains EST
AU031225, mRNA sequence
Length = 668
Score = 317 bits (160), Expect = 3e-085
Identities = 381/454 (83%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 473 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 414
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 413 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 354
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| || |||||||||| ||||
Sbjct: 353 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcttcttttgatgtcacat 294
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 293 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 234
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 233 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 174
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 173 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 114
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 113 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 54
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 53 tcttcttcttctccgtctccgtgtcgctccccat 20
>gb|AV919906.1|AV919906 AV919906 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8d11 3', mRNA sequence
Length = 571
Score = 315 bits (159), Expect = 1e-084
Identities = 371/441 (84%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 391 agatgtagcctcagcgacttccgttacaacttggtcatagtccgacttcagtttatcctt 450
||||||| ||||||||||||| |||||||| || | || ||||| | |||||| |||||
Sbjct: 92 agatgtaacctcagcgacttcagttacaacctgcttgtattccgattccagtttctcctt 151
Query: 451 cacctctccactgagctcccccttgtttggtttggtcagaaccaagacgcaacaagtcgg 510
||||||| || ||| |||||||||| ||| ||||||| ||||| ||||| || || ||
Sbjct: 152 cacctcttcagtgatctcccccttggctggcttggtcatcaccaacacgcagcaggtggg 211
Query: 511 cctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaac 570
|||||| || || || ||||||||||| ||||||||||||| ||||||| ||| || ||
Sbjct: 212 cctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacatatatgtatgggac 271
Query: 571 attagcttcctcacatagtatcggaacatgtgtaatcacatcaataggagaaatatttcc 630
||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| || |||||
Sbjct: 272 attggcttcctcacaaagtatgggaagatgtgtaatcacatcgataggagagatgtttcc 331
Query: 631 agcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacctctttgactcc 690
||| || |||||||| |||||| |||| ||||| ||||||||||| ||||| ||||| ||
Sbjct: 332 agcaattacacacaaccctttgctcccacggcggatgctcttgaccacctccttgacccc 391
Query: 691 gcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagag 750
|||||| |||||||| ||||| |||||||| || |||||||||||||| |||| ||||
Sbjct: 392 gcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggttttcttggagag 451
Query: 751 cttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg---ccttcttctc 807
|||||| || ||||| || || ||||||| | ||||||||||| || |||||||||
Sbjct: 452 cttcttgccggcgagcggcttggcgatgggcgccagcgccaccggggtcttcttcttctc 511
Query: 808 cgtctccgtgtcgctccccat 828
|||||||||||||||||||||
Sbjct: 512 cgtctccgtgtcgctccccat 532
>gb|BU979011.1|BU979011 HA14O12r HA Hordeum vulgare subsp. vulgare cDNA clone HA14O12
5-PRIME, mRNA sequence
Length = 495
Score = 315 bits (159), Expect = 1e-084
Identities = 371/441 (84%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 391 agatgtagcctcagcgacttccgttacaacttggtcatagtccgacttcagtttatcctt 450
||||||| ||||||||||||| |||||||| || | || ||||| | |||||| |||||
Sbjct: 492 agatgtaacctcagcgacttcagttacaacctgcttgtattccgattccagtttctcctt 433
Query: 451 cacctctccactgagctcccccttgtttggtttggtcagaaccaagacgcaacaagtcgg 510
||||||| || ||| |||||||||| ||| ||||||| ||||| ||||| || || ||
Sbjct: 432 cacctcttcagtgatctcccccttggctggcttggtcatcaccaacacgcagcaggtggg 373
Query: 511 cctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaac 570
|||||| || || || ||||||||||| ||||||||||||| ||||||| ||| || ||
Sbjct: 372 cctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacatatatgtatgggac 313
Query: 571 attagcttcctcacatagtatcggaacatgtgtaatcacatcaataggagaaatatttcc 630
||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| || |||||
Sbjct: 312 attggcttcctcacaaagtatgggaagatgtgtaatcacatcgataggagagatgtttcc 253
Query: 631 agcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacctctttgactcc 690
||| || |||||||| |||||| |||| ||||| ||||||||||| ||||| ||||| ||
Sbjct: 252 agcaattacacacaaccctttgctcccacggcggatgctcttgaccacctccttgacccc 193
Query: 691 gcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagag 750
|||||| |||||||| ||||| |||||||| || |||||||||||||| |||| ||||
Sbjct: 192 gcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggttttcttggagag 133
Query: 751 cttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg---ccttcttctc 807
|||||| || ||||| || || ||||||| | ||||||||||| || |||||||||
Sbjct: 132 cttcttgccggcgagcggcttggcgatgggcgccagcgccaccggggtcttcttcttctc 73
Query: 808 cgtctccgtgtcgctccccat 828
|||||||||||||||||||||
Sbjct: 72 cgtctccgtgtcgctccccat 52
>gb|AV915482.1|AV915482 AV915482 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14l13 5', mRNA sequence
Length = 575
Score = 311 bits (157), Expect = 2e-083
Identities = 382/455 (83%), Gaps = 4/455 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttcc-gttacaacttggtcatagtccgac 436
|||||||||| | ||||||| ||||||||||||| |||||||| || | || |||||
Sbjct: 494 ctcagaacatagaagatgtaacctcagcgacttcaagttacaacctgcttgtattccgat 435
Query: 437 ttcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaag 496
| |||||| |||||||||||| || ||| |||||||||| ||| ||||||| |||||
Sbjct: 434 tccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaac 375
Query: 497 acgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaaca 556
||||| || || |||||||| || || || ||||||||||| ||||||||||||| |||
Sbjct: 374 acgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcaca 315
Query: 557 tatacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaata 616
|||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 314 tatatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgata 255
Query: 617 ggagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgact 676
||||| || |||||||| || |||||||| |||||| |||| ||||| |||||||||||
Sbjct: 254 ggagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacc 195
Query: 677 acctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagg 736
||||| ||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||
Sbjct: 194 acctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagg 135
Query: 737 gtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgag 796
|| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| |
Sbjct: 134 gttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccggg 75
Query: 797 g---ccttcttctccgtctccgtgtcgctccccat 828
| ||||||||||||||||||||||||||||||
Sbjct: 74 gtcttcttcttctccgtctccgtgtcgctccccat 40
>gb|CK124732.1|CK124732 BES1824110c24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C2410 5-PRIME, mRNA sequence
Length = 582
Score = 307 bits (155), Expect = 3e-082
Identities = 379/454 (83%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||| ||| ||||||||||||| | |||||| || | || | ||| |
Sbjct: 514 ctcagaacatagaagangtaacctcagcgacttcagntacaacctgcttgtattncgatt 455
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 454 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 395
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 394 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 335
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 334 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 275
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 274 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 215
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 214 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 155
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 154 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 95
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 94 tcttcttcttctccgtctccgtgtcgctccccat 61
>gb|AV921307.1|AV921307 AV921307 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p21 3', mRNA sequence
Length = 621
Score = 303 bits (153), Expect = 5e-081
Identities = 360/429 (83%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 191 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 250
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 251 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 310
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 311 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 370
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 371 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 430
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 431 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 490
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 491 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 550
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 551 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 610
Query: 798 ccttcttct 806
||||||||
Sbjct: 611 tcttcttct 619
>gb|AV920582.1|AV920582 AV920582 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14l13 3', mRNA sequence
Length = 670
Score = 299 bits (151), Expect = 8e-080
Identities = 381/456 (83%), Gaps = 5/456 (1%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 190 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 249
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 309
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 310 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 369
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 370 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 429
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 430 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 489
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 490 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 549
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | |||||||||| ||
Sbjct: 550 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccacccggg 609
Query: 798 ----ccttcttctccgtc-tccgtgtcgctccccat 828
||||||||||||| |||||||||||||||||
Sbjct: 610 gtcttcttcttctccgtcttccgtgtcgctccccat 645
>gb|AV922365.1|AV922365 AV922365 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags3o15 3', mRNA sequence
Length = 641
Score = 297 bits (150), Expect = 3e-079
Identities = 379/455 (83%), Gaps = 4/455 (0%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 175 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 234
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||| | || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 235 ccagtttctccttcaccttttcagtgatctcccccttggctggcttggtcatcaccaaca 294
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 295 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 354
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 355 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 414
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 415 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 474
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 475 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 534
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | |||||||||| ||
Sbjct: 535 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccacccggg 594
Query: 798 ----ccttcttctccgtctccgtgtcgctccccat 828
|||||||||||||| |||||||||||||||
Sbjct: 595 gtcttcttcttctccgtcttcgtgtcgctccccat 629
>gb|BU979185.1|BU979185 HA15G09r HA Hordeum vulgare subsp. vulgare cDNA clone HA15G09
5-PRIME, mRNA sequence
Length = 507
Score = 297 bits (150), Expect = 3e-079
Identities = 359/428 (83%), Gaps = 3/428 (0%)
Strand = Plus / Minus
Query: 404 gcgacttccgttacaacttggtcatagtccgacttcagtttatccttcacctctccactg 463
|||||||| |||||||| || | || ||||| | |||||| |||||||||||| || ||
Sbjct: 507 gcgacttcagttacaacctgcttgtattccgattccagtttctccttcacctcttcagtg 448
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
| |||||||||| ||| ||||||| ||||| ||||| || || |||||||| || ||
Sbjct: 447 atctcccccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagta 388
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| ||||||||||| ||||||||||||| ||||||| ||| || ||||| |||||||||
Sbjct: 387 cccgcggtcgcaagctcctcttttgatgtcacatatatgtatgggacattggcttcctca 328
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| ||||| |||| ||||||||||||||| |||||||| || |||||||| || ||||||
Sbjct: 327 caaagtatgggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacac 268
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcac 703
|| |||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 267 aaccctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcac 208
Query: 704 ttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcg 763
|| ||||| |||||||| || |||||||||||||| |||| |||||||||| || |||
Sbjct: 207 ttggcctccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcg 148
Query: 764 aggggtttcgcgatggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcg 820
|| || || ||||||| | ||||||||||| || ||||||||||||||||||||||
Sbjct: 147 agcggcttggcgatgggcgccagcgccaccggggtcttcttcttctccgtctccgtgtcg 88
Query: 821 ctccccat 828
||||||||
Sbjct: 87 ctccccat 80
>gb|BU985492.1|BU985492 HF07K06r HF Hordeum vulgare subsp. vulgare cDNA clone HF07K06
5-PRIME, mRNA sequence
Length = 521
Score = 295 bits (149), Expect = 1e-078
Identities = 350/417 (83%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 422 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 363
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 362 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 303
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 302 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 243
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 242 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 183
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 182 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 123
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 122 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 63
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccg 794
| |||| |||||||||| || ||||| || || ||||||| | |||||||||||
Sbjct: 62 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccg 6
>gb|BM375283.2|BM375283 EBem06_SQ002_O02_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_O02 5', mRNA sequence
Length = 461
Score = 291 bits (147), Expect = 2e-077
Identities = 332/393 (84%), Gaps = 3/393 (0%)
Strand = Plus / Minus
Query: 439 cagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagac 498
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| ||
Sbjct: 446 cagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaacac 387
Query: 499 gcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacata 558
||| || || |||||||| || || || ||||||||||| ||||||||||||| |||||
Sbjct: 386 gcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacata 327
Query: 559 tacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagg 618
|| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| |||||
Sbjct: 326 tatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatagg 267
Query: 619 agaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactac 678
||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| ||
Sbjct: 266 agagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgaccac 207
Query: 679 ctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggt 738
||| ||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 206 ctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggt 147
Query: 739 ccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg- 797
|||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 146 tttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccggggt 87
Query: 798 --ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 86 cttcttcttctccgtctccgtgtcgctccccat 54
>gb|AV914807.1|AV914807 AV914807 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8d11 5', mRNA sequence
Length = 584
Score = 289 bits (146), Expect = 8e-077
Identities = 349/417 (83%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 462 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 403
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 402 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 343
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 342 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 283
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 282 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 223
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || ||| |||| |||||| |||| ||||| ||||||||||| |
Sbjct: 222 gagagatgtttccagcaattacanacaaccctttgctcccacggcggatgctcttgacca 163
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 162 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 103
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccg 794
| |||| |||||||||| || ||||| || || ||||||| | |||||||||||
Sbjct: 102 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccg 46
>gb|BQ754168.1|BQ754168 EBca01_SQ003_B03_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_B03 5', mRNA sequence
Length = 421
Score = 285 bits (144), Expect = 1e-075
Identities = 333/394 (84%), Gaps = 4/394 (1%)
Strand = Plus / Minus
Query: 439 cagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagac 498
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| ||
Sbjct: 415 cagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaacac 356
Query: 499 gcaacaagtcggcctcttagtggttcc-tgcggtcgcaagatcctcttttgatggaacat 557
||| || || |||||||| || || || |||||||||||| ||||||||||||| ||||
Sbjct: 355 gcagcaggtgggcctcttggtagtaccctgcggtcgcaagctcctcttttgatgtcacat 296
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 295 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 236
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 235 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 176
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 175 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 116
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| |||| |||||||||| || ||||| || || ||||||| | ||||||||||| ||
Sbjct: 115 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccaccgggg 56
Query: 798 ---ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 55 tcttcttcttctccgtctccgtgtcgctccccat 22
>gb|BM098583.2|BM098583 EBem08_SQ003_H22_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ003_H22 5', mRNA sequence
Length = 468
Score = 283 bits (143), Expect = 5e-075
Identities = 331/393 (84%), Gaps = 3/393 (0%)
Strand = Plus / Minus
Query: 439 cagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaagac 498
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| ||
Sbjct: 462 cagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaacac 403
Query: 499 gcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacata 558
||| || || |||||||| || || || ||||||||||| ||||||||||||| |||||
Sbjct: 402 gcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacata 343
Query: 559 tacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatagg 618
|| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| |||||
Sbjct: 342 tatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatagg 283
Query: 619 agaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactac 678
||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| ||
Sbjct: 282 agagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgaccac 223
Query: 679 ctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggt 738
||| ||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 222 ctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggt 163
Query: 739 ccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg- 797
|||| |||||||||| || |||| || || ||||||| | ||||||||||| ||
Sbjct: 162 tttcttggagagcttcttgccggcgaccggcttggcgatgggcgccagcgccaccggggt 103
Query: 798 --ccttcttctccgtctccgtgtcgctccccat 828
||||||||||||||||||||||||||||||
Sbjct: 102 cttcttcttctccgtctccgtgtcgctccccat 70
>gb|BQ661047.1|BQ661047 HM01K21w HM Hordeum vulgare subsp. vulgare cDNA clone HM01K21
3-PRIME, mRNA sequence
Length = 507
Score = 281 bits (142), Expect = 2e-074
Identities = 337/402 (83%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 101 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 160
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 161 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 220
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 221 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 280
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 281 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 340
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||| | ||||||||||| |
Sbjct: 341 gagagatgtttccagcaattacacacaaccctttgctcccacgggggatgctcttgacca 400
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 401 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 460
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatgg 779
| |||| |||||||||| || ||||| || || |||||||
Sbjct: 461 ttttcttggagagcttcttgccggcgagcggcttggcgatgg 502
>gb|AV916180.1|AV916180 AV916180 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p21 5', mRNA sequence
Length = 614
Score = 280 bits (141), Expect = 7e-074
Identities = 306/361 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 416 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 357
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 356 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 297
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 296 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 237
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 236 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 177
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 176 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 117
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 116 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 57
Query: 738 t 738
|
Sbjct: 56 t 56
>gb|AJ436577.1|AJ436577 AJ436577 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050E08F1, mRNA sequence
Length = 572
Score = 280 bits (141), Expect = 7e-074
Identities = 306/361 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 391 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 332
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 331 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 272
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 271 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 212
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 211 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 152
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 151 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 92
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 91 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 32
Query: 738 t 738
|
Sbjct: 31 t 31
>gb|BQ663711.1|BQ663711 HU03K22u HU Hordeum vulgare subsp. vulgare cDNA clone HU03K22
3-PRIME, mRNA sequence
Length = 553
Score = 280 bits (141), Expect = 7e-074
Identities = 306/361 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 183 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 242
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 243 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 302
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 303 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 362
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 363 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 422
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 423 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 482
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 483 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 542
Query: 738 t 738
|
Sbjct: 543 t 543
>gb|CB859928.1|CB859928 HI12A14w HI Hordeum vulgare subsp. vulgare cDNA clone HI12A14
3-PRIME, mRNA sequence
Length = 579
Score = 278 bits (140), Expect = 3e-073
Identities = 305/360 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 220 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 279
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 280 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 339
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 340 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 399
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 400 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 459
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 460 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 519
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 520 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 579
>gb|BQ759553.1|BQ759553 EBpi01_SQ004_K20_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_K20 5', mRNA sequence
Length = 566
Score = 274 bits (138), Expect = 5e-072
Identities = 303/358 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 358 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 299
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 298 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 239
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 238 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 179
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 178 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 119
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 118 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 59
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgag 735
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||
Sbjct: 58 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgag 1
>gb|CA005247.1|CA005247 HU11K12u HU Hordeum vulgare subsp. vulgare cDNA clone HU11K12
3-PRIME, mRNA sequence
Length = 548
Score = 264 bits (133), Expect = 4e-069
Identities = 298/353 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 196 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 255
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 256 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 315
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 316 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 375
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 376 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 435
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 436 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 495
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagc 730
|||| ||||| |||||||| |||||||| ||||| |||||||| || ||||||
Sbjct: 496 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagc 548
>gb|BG343934.1|BG343934 HVSMEg0007C15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007C15f, mRNA sequence
Length = 807
Score = 248 bits (125), Expect = 3e-064
Identities = 274/323 (84%), Gaps = 3/323 (0%)
Strand = Plus / Minus
Query: 509 ggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatatacgtaagga 568
|||||||| || || || ||||| ||||| ||||||||||||| ||||||| ||| ||
Sbjct: 389 ggcctcttggtagtacccgcggttgcaagctcctcttttgatgtcacatatatgtatggg 330
Query: 569 acattagcttcctcacatagtatcggaacatgtgtaatcacatcaataggagaaatattt 628
||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| || |||
Sbjct: 329 acattggcttcctcacaaagtatgggaagatgtgtaatcacatcgataggagagatgttt 270
Query: 629 ccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgactacctctttgact 688
||||| || |||||||| |||||| |||| ||||| ||||||||||| ||||| |||||
Sbjct: 269 ccagcaattacacacaaccctttgctcccacggcggatgctcttgaccacctccttgacc 210
Query: 689 ccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcag 748
|||||||| |||||||| ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 209 ccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggttttcttggag 150
Query: 749 agcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg---ccttcttc 805
|||||||| || ||||| || || ||||||| | ||||||||||| || |||||||
Sbjct: 149 agcttcttgccggcgagcggcttggcgatgggcgccagcgccaccggggtcttcttcttc 90
Query: 806 tccgtctccgtgtcgctccccat 828
|||||||||||||||||||||||
Sbjct: 89 tccgtctccgtgtcgctccccat 67
>gb|AJ436578.1|AJ436578 AJ436578 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050E05F1, mRNA sequence
Length = 464
Score = 246 bits (124), Expect = 1e-063
Identities = 277/328 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 330 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 271
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 270 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 211
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 210 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 151
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 150 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 91
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 90 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 31
Query: 678 cctctttgactccgcgcttgaggcactt 705
|||| ||||| |||||||| ||||||||
Sbjct: 30 cctccttgaccccgcgcttcaggcactt 3
>gb|BU984645.1|BU984645 HF04I21r HF Hordeum vulgare subsp. vulgare cDNA clone HF04I21
5-PRIME, mRNA sequence
Length = 533
Score = 232 bits (117), Expect = 2e-059
Identities = 342/417 (82%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 420 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 361
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 360 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 301
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 300 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 241
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| |||| ||||||||||| ||||| |||| |||||||| | | ||||
Sbjct: 240 atatgtatcccccattggcttcctcacaaagtatgggaagatgtgtaaaacaaacgatag 181
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 180 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 121
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| ||||| |||||||| |||||||| ||||| |||||||| || |||||||||||||
Sbjct: 120 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 61
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccg 794
| |||| |||||||||| || ||||| || || ||||||| | || |||||||||
Sbjct: 60 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgtctgcgccaccg 4
>gb|AJ463393.1|AJ463393 AJ463393 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200043A08F1, mRNA sequence
Length = 360
Score = 226 bits (114), Expect = 1e-057
Identities = 261/310 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 310 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 251
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 191
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 190 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 131
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 130 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 71
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||||||| |
Sbjct: 70 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 11
Query: 678 cctctttgac 687
|||| |||||
Sbjct: 10 cctccttgac 1
>gb|AL507451.1|AL507451 AL507451 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L17V 5',
mRNA sequence
Length = 332
Score = 220 bits (111), Expect = 6e-056
Identities = 247/293 (84%), Gaps = 3/293 (1%)
Strand = Plus / Minus
Query: 539 tcctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaaca 598
||||||||||||| ||||||| ||| || ||||| ||||||||||| ||||| |||| |
Sbjct: 332 tcctcttttgatgtcacatatatgtatggnacattggcttcctcacaaagtatgggaaga 273
Query: 599 tgtgtaatcacatcaataggagaaatatttccagcgatcacacacaatcctttgttcccg 658
|||||||||||||| |||||||| || |||||||| | |||||||| |||||| ||||
Sbjct: 272 tgtgtaatcacatcgataggagagatgtttccagcaantacacacaaccctttgctccca 213
Query: 659 cggcgaatgctcttgactacctctttgactccgcgcttgaggcacttcgcctcggaggct 718
||| | ||||||||||| ||||| ||||| |||||||| |||||||| ||||| ||||||
Sbjct: 212 cggnggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcctccgaggct 153
Query: 719 cgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatg 778
|| || |||||||||||||| |||| |||||||||| || ||||| || || ||||||
Sbjct: 152 cggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatg 93
Query: 779 gacatcagcgccaccgaggccttc---ttctccgtctccgtgtcgctccccat 828
| | ||||||||||| || |||| ||||| ||||||||||||||||||||
Sbjct: 92 ggcgccagcgccaccggggtcttcttnttctcngtctccgtgtcgctccccat 40
>gb|BE194239.3|BE194239 HVSMEh0084M12f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0084M12f, mRNA sequence
Length = 641
Score = 208 bits (105), Expect = 2e-052
Identities = 292/351 (83%), Gaps = 5/351 (1%)
Strand = Plus / Minus
Query: 482 ttggtcagaaccaagacgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcc 541
||||||| ||||| ||||| || || |||||||| || || || ||||| |||| |||
Sbjct: 422 ttggtcatcaccaacacgcagcaggtgggcctcttggtagtacccgcggtgccaagctcc 363
Query: 542 tcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaac-atg 600
|||||||||| |||||| ||| || ||||| ||||||||||| ||||| ||||| |||
Sbjct: 362 tcttttgatgtcccatatatgtatgggacattggcttcctcacaaagtat-ggaacgatg 304
Query: 601 tgtaatcacatcaataggagaaatatttccagcgatcacacacaatcctttgttcccgcg 660
|||| |||||| |||||||| || |||||||| || |||||||| |||||| |||| ||
Sbjct: 303 tgtatccacatcgataggagagatgtttccagcaattacacacaaccctttgctcccacg 244
Query: 661 gcgaatgctcttgactacctctttgactccgcgcttgaggcacttcgcctcggaggctcg 720
||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 243 gcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcctccgaggctcg 184
Query: 721 tcgcacgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatgga 780
|| |||||||||||||| |||| |||||||||| || ||||| || || |||||||
Sbjct: 183 gcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatggg 124
Query: 781 catcagcgccaccgagg---ccttcttctccgtctccgtgtcgctccccat 828
| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 123 cgccagcgccaccggggtcttcttcttctccgtctccgtgtcgctccccat 73
>gb|AJ463394.1|AJ463394 AJ463394 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200062H08F1, mRNA sequence
Length = 360
Score = 196 bits (99), Expect = 9e-049
Identities = 231/275 (84%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 277 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 218
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 217 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 158
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 157 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 98
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 97 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 38
Query: 618 gagaaatatttccagcgatcacacacaatcctttg 652
|||| || |||||||| || |||||||| ||||||
Sbjct: 37 gagagatgtttccagcaattacacacaaccctttg 3
>gb|BG418405.2|BG418405 HVSMEk0022J09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022J09f, mRNA sequence
Length = 427
Score = 192 bits (97), Expect = 1e-047
Identities = 245/293 (83%), Gaps = 1/293 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 296 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 237
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 236 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 177
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||| ||||| ||||||||||||| ||||
Sbjct: 176 cgcagcaggtgggcctcttggtagtacccgcggttgcaagctcctcttttgatgtcacat 117
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| ||| || ||||| ||||||||||| ||||| |||| ||||||||||||||| ||||
Sbjct: 116 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 57
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctc 670
|||| || |||||||| || |||||||| |||||| |||| ||||| ||||||
Sbjct: 56 gagagatgtttccagcaattacacacaa-cctttgctcccacggcggatgctc 5
>gb|AL510697.1|AL510697 AL510697 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L17u 3',
mRNA sequence
Length = 469
Score = 153 bits (77), Expect = 1e-035
Identities = 195/235 (82%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 201 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 260
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 261 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 320
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 321 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 380
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatc 612
||| ||| || ||||| ||||||||||| ||| | |||| ||||||| |||||||
Sbjct: 381 atatgtatgggacattggcttcctcacaaagtntgggaagatgtgtantcacatc 435
>gb|BM376533.1|BM376533 EBem05_SQ002_I01_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I01 5', mRNA sequence
Length = 387
Score = 117 bits (59), Expect = 6e-025
Identities = 152/183 (83%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 191 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 132
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 131 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 72
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
|||| || || |||||||| || || || ||||||||||| ||||||||||||| ||||
Sbjct: 71 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 12
Query: 558 ata 560
|||
Sbjct: 11 ata 9
>gb|AL503014.1|AL503014 AL503014 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09H05u 3', mRNA sequence
Length = 426
Score = 103 bits (52), Expect = 1e-020
Identities = 143/174 (82%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || |||| |
Sbjct: 202 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgntt 261
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 262 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 321
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatg 551
|||| || || |||||||| || | || ||||||||||| |||||||||||||
Sbjct: 322 cgcagcaggtgggcctcttggtantacccgcggtcgcaagctcctcttttgatg 375
>gb|BM373007.1|BM373007 EBma04_SQ002_L14_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_L14 5', mRNA sequence
Length = 344
Score = 85.7 bits (43), Expect = 2e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 150 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 91
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
|||||| |||||||||||| || ||| |||||||||| ||| ||||||| ||||| |
Sbjct: 90 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 31
Query: 498 cgcaacaagtcggcctctt 516
|||| || || ||||||||
Sbjct: 30 cgcagcaggtgggcctctt 12
>gb|BQ758870.1|BQ758870 EBma07_SQ003_G02_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ003_G02 5', mRNA sequence
Length = 197
Score = 85.7 bits (43), Expect = 2e-015
Identities = 105/125 (84%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 707 gcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgagg 766
||||| |||||||| || |||||||||||||| |||| |||||||||| || |||||
Sbjct: 194 gcctccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagc 135
Query: 767 ggtttcgcgatggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcgctc 823
|| || ||||||| | ||||||||||| || |||||||||||||||||||||||||
Sbjct: 134 ggcttggcgatgggcgccagcgccaccggggtcttcttcttctccgtctccgtgtcgctc 75
Query: 824 cccat 828
|||||
Sbjct: 74 cccat 70
>gb|BU998743.1|BU998743 HI12A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A14
5-PRIME, mRNA sequence
Length = 192
Score = 85.7 bits (43), Expect = 2e-015
Identities = 105/125 (84%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 707 gcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcgagg 766
||||| |||||||| || |||||||||||||| |||| |||||||||| || |||||
Sbjct: 188 gcctccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagc 129
Query: 767 ggtttcgcgatggacatcagcgccaccgagg---ccttcttctccgtctccgtgtcgctc 823
|| || ||||||| | ||||||||||| || |||||||||||||||||||||||||
Sbjct: 128 ggcttggcgatgggcgccagcgccaccggggtcttcttcttctccgtctccgtgtcgctc 69
Query: 824 cccat 828
|||||
Sbjct: 68 cccat 64
>gb|BU990744.1|BU990744 HF25O23r HF Hordeum vulgare subsp. vulgare cDNA clone HF25O23
5-PRIME, mRNA sequence
Length = 307
Score = 77.8 bits (39), Expect = 6e-013
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||| | ||||||| ||||||||||||| |||||||| || | || ||||| |
Sbjct: 125 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 66
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtca 488
|||||| |||||||||||| || ||| |||||||||| ||| |||||||
Sbjct: 65 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtca 15
>gb|BF255423.3|BF255423 HVSMEf0006N03f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006N03f, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 819 cgctccccatcgccgccgccgc 840
||||||||||||||||||||||
Sbjct: 117 cgctccccatcgccgccgccgc 138
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,063
Number of Sequences: 312970
Number of extensions: 132063
Number of successful extensions: 54595
Number of sequences better than 0.5: 100
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54357
Number of HSP's gapped (non-prelim): 203
length of query: 878
length of database: 175,134,539
effective HSP length: 19
effective length of query: 859
effective length of database: 169,188,109
effective search space: 145332585631
effective search space used: 145332585631
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)