BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131537.2.148
         (977 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL505468.1|AL505468  AL505468 Hordeum vulgare Barke roots...    48   5e-004

>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW08J03V 5', mRNA sequence
          Length = 545

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 344 agttgtccaacagagaccatgtgaagtggccgcgcacgtc 383
           ||||||||| ||||||||| | ||||| ||||||||||||
Sbjct: 392 agttgtccagcagagaccacgcgaagtagccgcgcacgtc 353



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,932
Number of Sequences: 312970
Number of extensions: 72932
Number of successful extensions: 19609
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19608
Number of HSP's gapped (non-prelim): 1
length of query: 977
length of database: 175,134,539
effective HSP length: 19
effective length of query: 958
effective length of database: 169,188,109
effective search space: 162082208422
effective search space used: 162082208422
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)