BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL508555.1|AL508555 AL508555 Hordeum vulgare Barke devel... 40 0.18
gb|AL508923.1|AL508923 AL508923 Hordeum vulgare Barke devel... 40 0.18
gb|BG343313.2|BG343313 HVSMEg0005G06f Hordeum vulgare pre-a... 40 0.18
gb|AV921301.1|AV921301 AV921301 K. Sato unpublished cDNA li... 40 0.18
gb|AV932248.1|AV932248 AV932248 K. Sato unpublished cDNA li... 40 0.18
gb|AV935089.1|AV935089 AV935089 K. Sato unpublished cDNA li... 40 0.18
gb|AV935849.1|AV935849 AV935849 K. Sato unpublished cDNA li... 40 0.18
gb|AJ462875.1|AJ462875 AJ462875 S00002 Hordeum vulgare subs... 40 0.18
gb|AJ462876.1|AJ462876 AJ462876 S00002 Hordeum vulgare subs... 40 0.18
gb|AJ462878.1|AJ462878 AJ462878 S00002 Hordeum vulgare subs... 40 0.18
gb|AJ462884.1|AJ462884 AJ462884 S00002 Hordeum vulgare subs... 40 0.18
gb|BJ469205.1|BJ469205 BJ469205 K. Sato unpublished cDNA li... 40 0.18
gb|BJ470373.1|BJ470373 BJ470373 K. Sato unpublished cDNA li... 40 0.18
gb|BJ470501.1|BJ470501 BJ470501 K. Sato unpublished cDNA li... 40 0.18
gb|BJ471803.1|BJ471803 BJ471803 K. Sato unpublished cDNA li... 40 0.18
gb|BJ474410.1|BJ474410 BJ474410 K. Sato unpublished cDNA li... 40 0.18
gb|BJ475147.1|BJ475147 BJ475147 K. Sato unpublished cDNA li... 40 0.18
gb|BI780292.2|BI780292 EBem06_SQ001_C07_R embryo, 21 DPA, n... 40 0.18
gb|BM368632.2|BM368632 EBem08_SQ004_C18_R embryo, 40 DPA, n... 40 0.18
gb|BM097016.2|BM097016 EBpi07_SQ002_C04_R pistil, 12 DPA, n... 40 0.18
gb|BU976974.1|BU976974 HA10K03r HA Hordeum vulgare subsp. v... 40 0.18
gb|BU976975.1|BU976975 HA10K03u HA Hordeum vulgare subsp. v... 40 0.18
gb|BU977450.1|BU977450 HA11H06r HA Hordeum vulgare subsp. v... 40 0.18
gb|BU977451.1|BU977451 HA11H06u HA Hordeum vulgare subsp. v... 40 0.18
gb|BU978627.1|BU978627 HA13M15r HA Hordeum vulgare subsp. v... 40 0.18
gb|BU984228.1|BU984228 HF03F15r HF Hordeum vulgare subsp. v... 40 0.18
gb|BU998985.1|BU998985 HI12N04r HI Hordeum vulgare subsp. v... 40 0.18
gb|CA006288.1|CA006288 HU14M22u HU Hordeum vulgare subsp. v... 40 0.18
gb|CA007540.1|CA007540 HU08E13r HU Hordeum vulgare subsp. v... 40 0.18
gb|CA013725.1|CA013725 HT09E23r HT Hordeum vulgare subsp. v... 40 0.18
gb|CA019502.1|CA019502 HV12D01r HV Hordeum vulgare subsp. v... 40 0.18
gb|CA025105.1|CA025105 HZ51D15r HZ Hordeum vulgare subsp. v... 40 0.18
gb|CB875130.1|CB875130 HX07F21w HX Hordeum vulgare subsp. v... 40 0.18
>gb|AL508555.1|AL508555 AL508555 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09B18V 5',
mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 458 cccttcttgtcacctgttttctgg 481
>gb|AL508923.1|AL508923 AL508923 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10D05V 5',
mRNA sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 469 cccttcttgtcacctgttttctgg 492
>gb|BG343313.2|BG343313 HVSMEg0005G06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005G06f, mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 144 cccttcttgtcacctgttttctgg 121
>gb|AV921301.1|AV921301 AV921301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1p04 3', mRNA sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 433 cccttcttgtcacctgttttctgg 456
>gb|AV932248.1|AV932248 AV932248 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2n16 5', mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 162 cccttcttgtcacctgttttctgg 139
>gb|AV935089.1|AV935089 AV935089 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2n16 3', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 410 cccttcttgtcacctgttttctgg 433
>gb|AV935849.1|AV935849 AV935849 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6l08 3', mRNA sequence
Length = 572
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 428 cccttcttgtcacctgttttctgg 451
>gb|AJ462875.1|AJ462875 AJ462875 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200049D12F1, mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 101 cccttcttgtcacctgttttctgg 78
>gb|AJ462876.1|AJ462876 AJ462876 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200050D12F1, mRNA sequence
Length = 240
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 92 cccttcttgtcacctgttttctgg 69
>gb|AJ462878.1|AJ462878 AJ462878 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070A12F1, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 99 cccttcttgtcacctgttttctgg 76
>gb|AJ462884.1|AJ462884 AJ462884 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200032H09F1, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 292 cccttcttgtcacctgttttctgg 269
>gb|BJ469205.1|BJ469205 BJ469205 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13k14 5', mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 160 cccttcttgtcacctgttttctgg 137
>gb|BJ470373.1|BJ470373 BJ470373 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal16o03 5', mRNA sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 171 cccttcttgtcacctgttttctgg 148
>gb|BJ470501.1|BJ470501 BJ470501 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal22o17 5', mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 101 cccttcttgtcacctgttttctgg 78
>gb|BJ471803.1|BJ471803 BJ471803 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21m01 5', mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 108 cccttcttgtcacctgttttctgg 85
>gb|BJ474410.1|BJ474410 BJ474410 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13k14 3', mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 441 cccttcttgtcacctgttttctgg 464
>gb|BJ475147.1|BJ475147 BJ475147 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal21m01 3', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 410 cccttcttgtcacctgttttctgg 433
>gb|BI780292.2|BI780292 EBem06_SQ001_C07_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ001_C07 5', mRNA sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 120 cccttcttgtcacctgttttctgg 97
>gb|BM368632.2|BM368632 EBem08_SQ004_C18_R embryo, 40 DPA, no treatment, cv Optic, EBem08
Hordeum vulgare subsp. vulgare cDNA clone
EBem08_SQ004_C18 5', mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 269 cccttcttgtcacctgttttctgg 246
>gb|BM097016.2|BM097016 EBpi07_SQ002_C04_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_C04 5', mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 125 cccttcttgtcacctgttttctgg 102
>gb|BU976974.1|BU976974 HA10K03r HA Hordeum vulgare subsp. vulgare cDNA clone HA10K03
5-PRIME, mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 518 cccttcttgtcacctgttttctgg 495
>gb|BU976975.1|BU976975 HA10K03u HA Hordeum vulgare subsp. vulgare cDNA clone HA10K03
3-PRIME, mRNA sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 486 cccttcttgtcacctgttttctgg 509
>gb|BU977450.1|BU977450 HA11H06r HA Hordeum vulgare subsp. vulgare cDNA clone HA11H06
5-PRIME, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 443 cccttcttgtcacctgttttctgg 420
>gb|BU977451.1|BU977451 HA11H06u HA Hordeum vulgare subsp. vulgare cDNA clone HA11H06
3-PRIME, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 436 cccttcttgtcacctgttttctgg 459
>gb|BU978627.1|BU978627 HA13M15r HA Hordeum vulgare subsp. vulgare cDNA clone HA13M15
5-PRIME, mRNA sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 443 cccttcttgtcacctgttttctgg 420
>gb|BU984228.1|BU984228 HF03F15r HF Hordeum vulgare subsp. vulgare cDNA clone HF03F15
5-PRIME, mRNA sequence
Length = 488
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 183 cccttcttgtcacctgttttctgg 160
>gb|BU998985.1|BU998985 HI12N04r HI Hordeum vulgare subsp. vulgare cDNA clone HI12N04
5-PRIME, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 452 cccttcttgtcacctgttttctgg 475
>gb|CA006288.1|CA006288 HU14M22u HU Hordeum vulgare subsp. vulgare cDNA clone HU14M22
3-PRIME, mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 410 cccttcttgtcacctgttttctgg 433
>gb|CA007540.1|CA007540 HU08E13r HU Hordeum vulgare subsp. vulgare cDNA clone HU08E13
5-PRIME, mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 444 cccttcttgtcacctgttttctgg 421
>gb|CA013725.1|CA013725 HT09E23r HT Hordeum vulgare subsp. vulgare cDNA clone HT09E23
5-PRIME, mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 608 cccttcttgtcacctgttttctgg 585
>gb|CA019502.1|CA019502 HV12D01r HV Hordeum vulgare subsp. vulgare cDNA clone HV12D01
5-PRIME, mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 401 cccttcttgtcacctgttttctgg 378
>gb|CA025105.1|CA025105 HZ51D15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51D15
5-PRIME, mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 316 cccttcttgtcacctgttttctgg 293
>gb|CB875130.1|CB875130 HX07F21w HX Hordeum vulgare subsp. vulgare cDNA clone HX07F21
3-PRIME, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 450 cccttcttgccacctgttttctgg 473
||||||||| ||||||||||||||
Sbjct: 268 cccttcttgtcacctgttttctgg 291
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,187
Number of Sequences: 312970
Number of extensions: 145187
Number of successful extensions: 41103
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41014
Number of HSP's gapped (non-prelim): 89
length of query: 1297
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1278
effective length of database: 169,188,109
effective search space: 216222403302
effective search space used: 216222403302
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)