BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 11001390.3.1
         (588 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL503348.1|AL503348  AL503348 Hordeum vulgare Barke roots...    38   0.31 
gb|AL504356.1|AL504356  AL504356 Hordeum vulgare Barke roots...    38   0.31 
gb|AV836393.1|AV836393  AV836393 K. Sato unpublished cDNA li...    34   4.9  
gb|BM374875.1|BM374875  EBma05_SQ003_F08_R maternal, 12 DPA,...    34   4.9  
gb|AV915359.1|AV915359  AV915359 K. Sato unpublished cDNA li...    34   4.9  
gb|BQ763633.1|BQ763633  EBro03_SQ005_B04_R root, 3 week, wat...    34   4.9  

>gb|AL503348.1|AL503348 AL503348 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW01L22T 5', mRNA sequence
          Length = 700

 Score = 38.2 bits (19), Expect = 0.31
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
           ||||| ||||||||||| ||| |||| ||||||||
Sbjct: 43  agctacgattatgatgctccacttgatgaatatgg 77



>gb|AL504356.1|AL504356 AL504356 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW05A11V 5', mRNA sequence
          Length = 662

 Score = 38.2 bits (19), Expect = 0.31
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
           ||||| ||||||||||| ||| |||| ||||||||
Sbjct: 23  agctacgattatgatgctccacttgatgaatatgg 57



>gb|AV836393.1|AV836393 AV836393 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
           vulgare seedling leaves second leaf stage Hordeum
           vulgare subsp. vulgare cDNA clone basd11e15, mRNA
           sequence
          Length = 572

 Score = 34.2 bits (17), Expect = 4.9
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 152 tatgattatgatgcaccaatt 172
           |||||||||||||| ||||||
Sbjct: 471 tatgattatgatgcgccaatt 491



>gb|BM374875.1|BM374875 EBma05_SQ003_F08_R maternal, 12 DPA, no treatment, cv Optic, EBma05
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma05_SQ003_F08 5', mRNA sequence
          Length = 377

 Score = 34.2 bits (17), Expect = 4.9
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 364 acagttttgctcagctt 380
           |||||||||||||||||
Sbjct: 136 acagttttgctcagctt 152



>gb|AV915359.1|AV915359 AV915359 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags14a14 5', mRNA sequence
          Length = 576

 Score = 34.2 bits (17), Expect = 4.9
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 338 acaaatggaagcatttc 354
           |||||||||||||||||
Sbjct: 255 acaaatggaagcatttc 239



>gb|BQ763633.1|BQ763633 EBro03_SQ005_B04_R root, 3 week, waterlogged, cv Optic, EBro03
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro03_SQ005_B04 5', mRNA sequence
          Length = 360

 Score = 34.2 bits (17), Expect = 4.9
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 364 acagttttgctcagctt 380
           |||||||||||||||||
Sbjct: 106 acagttttgctcagctt 122



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:38 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,423
Number of Sequences: 312970
Number of extensions: 37423
Number of successful extensions: 9569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9563
Number of HSP's gapped (non-prelim): 6
length of query: 588
length of database: 175,134,539
effective HSP length: 19
effective length of query: 569
effective length of database: 169,188,109
effective search space: 96268034021
effective search space used: 96268034021
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)