BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Y13733
(1516 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Aven... 38 0.022
gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Aven... 36 0.088
gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Aven... 36 0.088
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 36 0.088
gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Aven... 36 0.088
gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Aven... 36 0.088
gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Aven... 36 0.088
gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Aven... 36 0.088
gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Aven... 34 0.35
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 34 0.35
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 34 0.35
emb|AM071409.1| Avena sativa partial mRNA for CBF-like tran... 34 0.35
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 32 1.4
gb|CN815534.1|CN815534 HRO4512_G01_N02ZS5 Lib AA071E1X Aven... 32 1.4
gb|CN816453.1|CN816453 HRO4520_H06_P12ZS5 Lib AA071E1X Aven... 32 1.4
gb|CN817815.1|CN817815 HRO4462_H08_P16ZS5 Lib AA070E1X Aven... 32 1.4
gb|CN821417.1|CN821417 HRO4425_B02_C03ZS5 Lib AA069E1X Aven... 32 1.4
gb|AA231834.1|AA231834 CDO1328.F cDNA from oat Avena sativa... 30 5.4
gb|BE439320.1|BE439320 CDO1388_WHE05G06F ITEC CDO Oat cDNA ... 30 5.4
gb|BE439372.1|BE439372 CDO1527_WHE05H10R ITEC CDO Oat cDNA ... 30 5.4
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN815177.1|CN815177 HRO4506_G02_M04ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN817136.1|CN817136 HRO4528_F06_L12ZS5 Lib AA071E1X Aven... 30 5.4
gb|CN817226.1|CN817226 HRO4458_E05_J10ZS5 Lib AA070E1X Aven... 30 5.4
gb|CN818057.1|CN818057 HRO4472_B09_C18ZS5 Lib AA070E1X Aven... 30 5.4
gb|CN818081.1|CN818081 HRO4472_A10_A20ZS5 Lib AA070E1X Aven... 30 5.4
gb|CN818711.1|CN818711 HRO4467_H12_O23ZS5 Lib AA070E1X Aven... 30 5.4
gb|CN818838.1|CN818838 HRO4473_H03_XXXZS5 Lib AA070E1X Aven... 30 5.4
gb|CN819467.1|CN819467 HRO4406_C08_E16ZS5 Lib AA069E1X Aven... 30 5.4
gb|CN819582.1|CN819582 HRO4401_G12_M23ZS5 Lib AA069E1X Aven... 30 5.4
gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Aven... 30 5.4
dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthran... 30 5.4
dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthran... 30 5.4
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 30 5.4
>gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F10_K19, mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 858 cgctggactacatcatcga 876
|||||||||||||||||||
Sbjct: 674 cgctggactacatcatcga 656
>gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_F11_K21, mRNA sequence
Length = 401
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 57 cgaggtggtcggcgaggt 40
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 63 ggtcggcgaggtggt 49
>gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_D05_H10, mRNA sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 121 cgaggtggtcggcgaggt 104
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 127 ggtcggcgaggtggt 113
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 250 cgaggtggtcggcgaggt 267
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 244 ggtcggcgaggtggt 258
>gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B02_C04, mRNA sequence
Length = 317
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 32 cgaggtggtcggcgaggt 15
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 38 ggtcggcgaggtggt 24
>gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E01_I02, mRNA
sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 123 cgaggtggtcggcgaggt 106
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 129 ggtcggcgaggtggt 115
>gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C06_F11, mRNA
sequence
Length = 398
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 133 cgaggtggtcggcgaggt 116
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 139 ggtcggcgaggtggt 125
>gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C11_E21, mRNA
sequence
Length = 476
Score = 36.2 bits (18), Expect = 0.088
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 334 cgaggtggtcggcgaggt 351
||||||||||||||||||
Sbjct: 218 cgaggtggtcggcgaggt 201
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 224 ggtcggcgaggtggt 210
>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D09_G17, mRNA sequence
Length = 450
Score = 34.2 bits (17), Expect = 0.35
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1195 ggcggaggcggcggcggcgga 1215
||||| |||||||||||||||
Sbjct: 50 ggcggcggcggcggcggcgga 70
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1198 ggaggcggcggcggcgg 1214
|||||||||||||||||
Sbjct: 422 ggaggcggcggcggcgg 438
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 34.2 bits (17), Expect = 0.35
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcg 1213
||||||| |||||||||||||
Sbjct: 357 gaggcggcggcggcggcggcg 377
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1198 ggaggcggcggcggcgg 1214
|||||||||||||||||
Sbjct: 356 ggaggcggcggcggcgg 372
>emb|AM071409.1| Avena sativa partial mRNA for CBF-like transcription factor (cbf4
gene)
Length = 848
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 382 cggcgtcggcgacgtgg 398
|||||||||||||||||
Sbjct: 170 cggcgtcggcgacgtgg 154
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 ccgcgccgatcccgaa 123
||||||||||||||||
Sbjct: 119 ccgcgccgatcccgaa 134
>gb|CN815534.1|CN815534 HRO4512_G01_N02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_G01_N02, mRNA sequence
Length = 346
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1166 gtcgtcgacgtcgccg 1181
||||||||||||||||
Sbjct: 88 gtcgtcgacgtcgccg 73
>gb|CN816453.1|CN816453 HRO4520_H06_P12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_H06_P12, mRNA sequence
Length = 815
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 429 gcgagtgcagcccctg 444
||||||||||||||||
Sbjct: 306 gcgagtgcagcccctg 291
>gb|CN817815.1|CN817815 HRO4462_H08_P16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_H08_P16, mRNA sequence
Length = 266
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 336 aggtggtcggcgaggt 351
||||||||||||||||
Sbjct: 82 aggtggtcggcgaggt 67
>gb|CN821417.1|CN821417 HRO4425_B02_C03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_B02_C03, mRNA
sequence
Length = 449
Score = 32.2 bits (16), Expect = 1.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1395 aatgtcagactgaataacta 1414
|||| |||||||||||||||
Sbjct: 445 aatggcagactgaataacta 426
>gb|AA231834.1|AA231834 CDO1328.F cDNA from oat Avena sativa cDNA clone CDO1328, mRNA
sequence
Length = 182
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 380 tacggcgtcggcgac 394
|||||||||||||||
Sbjct: 168 tacggcgtcggcgac 154
>gb|BE439320.1|BE439320 CDO1388_WHE05G06F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1388_WHE05G06, mRNA sequence
Length = 390
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 380 tacggcgtcggcgac 394
|||||||||||||||
Sbjct: 186 tacggcgtcggcgac 172
>gb|BE439372.1|BE439372 CDO1527_WHE05H10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1527_WHE05H10, mRNA sequence
Length = 251
Score = 30.2 bits (15), Expect = 5.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 92 gtcgtcgtcgtccccgccg 110
||||||||||||| |||||
Sbjct: 169 gtcgtcgtcgtcctcgccg 187
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1198 ggaggcggcggcggc 1212
|||||||||||||||
Sbjct: 246 ggaggcggcggcggc 260
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1198 ggaggcggcggcggc 1212
|||||||||||||||
Sbjct: 228 ggaggcggcggcggc 242
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1195 ggcggaggcggcggc 1209
|||||||||||||||
Sbjct: 210 ggcggaggcggcggc 224
>gb|CN815177.1|CN815177 HRO4506_G02_M04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_G02_M04, mRNA sequence
Length = 256
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1198 ggaggcggcggcggc 1212
|||||||||||||||
Sbjct: 67 ggaggcggcggcggc 53
>gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B03_D05, mRNA sequence
Length = 798
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1201 ggcggcggcggcgga 1215
|||||||||||||||
Sbjct: 38 ggcggcggcggcgga 24
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1201 ggcggcggcggcgga 1215
|||||||||||||||
Sbjct: 72 ggcggcggcggcgga 86
>gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E03_I06, mRNA sequence
Length = 493
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 838 catggcggcggccgc 852
|||||||||||||||
Sbjct: 95 catggcggcggccgc 81
>gb|CN817136.1|CN817136 HRO4528_F06_L12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_F06_L12, mRNA sequence
Length = 241
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 585 tggctccggagcaag 599
|||||||||||||||
Sbjct: 160 tggctccggagcaag 146
>gb|CN817226.1|CN817226 HRO4458_E05_J10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_E05_J10, mRNA sequence
Length = 628
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1480 tctggatttgccaag 1494
|||||||||||||||
Sbjct: 205 tctggatttgccaag 219
>gb|CN818057.1|CN818057 HRO4472_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_B09_C18, mRNA sequence
Length = 801
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1201 ggcggcggcggcgga 1215
|||||||||||||||
Sbjct: 36 ggcggcggcggcgga 22
>gb|CN818081.1|CN818081 HRO4472_A10_A20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_A10_A20, mRNA sequence
Length = 820
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1480 tctggatttgccaag 1494
|||||||||||||||
Sbjct: 585 tctggatttgccaag 599
>gb|CN818711.1|CN818711 HRO4467_H12_O23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_H12_O23, mRNA sequence
Length = 865
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1196 gcggaggcggcggcg 1210
|||||||||||||||
Sbjct: 95 gcggaggcggcggcg 81
>gb|CN818838.1|CN818838 HRO4473_H03_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_H03_XXX, mRNA sequence
Length = 595
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1480 tctggatttgccaag 1494
|||||||||||||||
Sbjct: 341 tctggatttgccaag 355
>gb|CN819467.1|CN819467 HRO4406_C08_E16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_C08_E16, mRNA
sequence
Length = 501
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 174 ggtcggcgaggtggt 160
>gb|CN819582.1|CN819582 HRO4401_G12_M23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_G12_M23, mRNA
sequence
Length = 359
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 340 ggtcggcgaggtggt 354
|||||||||||||||
Sbjct: 159 ggtcggcgaggtggt 145
>gb|CN821029.1|CN821029 HRO4422_G03_M06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G03_M06, mRNA
sequence
Length = 508
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 643 gaagcactttgggct 657
|||||||||||||||
Sbjct: 299 gaagcactttgggct 313
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 1, complete cds
Length = 1755
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 385 cgtcggcgacgtggt 399
|||||||||||||||
Sbjct: 617 cgtcggcgacgtggt 603
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 3, complete cds
Length = 1659
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 385 cgtcggcgacgtggt 399
|||||||||||||||
Sbjct: 490 cgtcggcgacgtggt 476
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 30.2 bits (15), Expect = 5.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1198 ggaggcggcggcggc 1212
|||||||||||||||
Sbjct: 324 ggaggcggcggcggc 310
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3386
Number of Sequences: 8143
Number of extensions: 3386
Number of successful extensions: 1077
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 84
length of query: 1516
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1499
effective length of database: 4,564,032
effective search space: 6841483968
effective search space used: 6841483968
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)