BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT2a11.yg.2.1
(532 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Aven... 42 5e-004
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 42 5e-004
gb|CN819732.1|CN819732 HRO4403_E02_J03ZS5 Lib AA069E1X Aven... 34 0.12
>gb|CN820645.1|CN820645 HRO4415_G08_N15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G08_N15, mRNA
sequence
Length = 646
Score = 42.1 bits (21), Expect = 5e-004
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 236 cgttgaactgtttcaaccacttggc 260
||||||||| |||||||||||||||
Sbjct: 372 cgttgaactctttcaaccacttggc 348
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 42.1 bits (21), Expect = 5e-004
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 236 cgttgaactgtttcaaccacttggc 260
||||||||| |||||||||||||||
Sbjct: 1645 cgttgaactctttcaaccacttggc 1621
>gb|CN819732.1|CN819732 HRO4403_E02_J03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E02_J03, mRNA
sequence
Length = 598
Score = 34.2 bits (17), Expect = 0.12
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 236 cgttgaactgtttcaaccacttggc 260
||||||||| | |||||||||||||
Sbjct: 254 cgttgaactctctcaaccacttggc 230
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 600
Number of Sequences: 8143
Number of extensions: 600
Number of successful extensions: 142
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 3
length of query: 532
length of database: 4,702,463
effective HSP length: 16
effective length of query: 516
effective length of database: 4,572,175
effective search space: 2359242300
effective search space used: 2359242300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)