BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN1e04.yg.2.1
         (361 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE439250.1|BE439250  CDO1416_WHE03D12R ITEC CDO Oat cDNA ...    32   0.32 

>gb|BE439250.1|BE439250 CDO1416_WHE03D12R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1416_WHE03D12, mRNA sequence
          Length = 274

 Score = 32.2 bits (16), Expect = 0.32
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 235 tctttccagatcctct 250
           ||||||||||||||||
Sbjct: 260 tctttccagatcctct 245



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 562
Number of Sequences: 8143
Number of extensions: 562
Number of successful extensions: 151
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 1
length of query: 361
length of database: 4,702,463
effective HSP length: 15
effective length of query: 346
effective length of database: 4,580,318
effective search space: 1584790028
effective search space used: 1584790028
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)