BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 62 5e-010
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 34 0.12
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 32 0.46
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 61.9 bits (31), Expect = 5e-010
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| |||||||| || |||||||||||| ||||| ||||| ||||
Sbjct: 183 cccttgaggaatgggtagaggtggacgatgacccagaaggaaaagaagagcttcccgaag 124
Query: 479 agcgggcccca 489
|| ||||||||
Sbjct: 123 agggggcccca 113
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 34.2 bits (17), Expect = 0.12
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 270 cacaatccaagccacagacctccag 294
|||||||||||||||| |||||||
Sbjct: 192 cacaatccaagccacactcctccag 168
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggt 434
||||||||||||||||
Sbjct: 87 cccttgaggaacgggt 72
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1343
Number of Sequences: 8143
Number of extensions: 1343
Number of successful extensions: 549
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 4
length of query: 520
length of database: 4,702,463
effective HSP length: 16
effective length of query: 504
effective length of database: 4,572,175
effective search space: 2304376200
effective search space used: 2304376200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)