BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Aven... 359 2e-099
gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Aven... 198 4e-051
gb|CN818561.1|CN818561 HRO4466_H04_P08ZS5 Lib AA070E1X Aven... 34 0.14
>gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D08_G16, mRNA sequence
Length = 842
Score = 359 bits (181), Expect = 2e-099
Identities = 325/374 (86%)
Strand = Plus / Minus
Query: 177 taaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccc 236
|||||||| |||| |||||||| ||||||||||| | |||||||||||| | | ||||
Sbjct: 398 taaatgctttctgtcttaaacctccctctctctctaacaaataagtggtatactattcct 339
Query: 237 tttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaa 296
|||||| |||||||| |||| | ||||| ||||||||||||||||||| || ||| |
Sbjct: 338 tttttgctggaacagttacatgtgcgattcataaattttggagtcctttcttctttttca 279
Query: 297 tggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtca 356
|| ||||| ||||| |||||||| || || ||||| ||||||||||||||||||||||||
Sbjct: 278 tgaatcttcgtagcgatatgtatgcagaggcgacatgatgaatgaaccgctgccatgtca 219
Query: 357 ataagagctttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaag 416
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 218 ataagtgccttgaaagaatcagatggaccatcatacttccacctcaaagattgattaaaa 159
Query: 417 gcatcagggtttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagc 476
|| ||||| ||||| ||||||| |||||||||| |||||||||||| ||| |||||||||
Sbjct: 158 gcgtcaggatttgatgcaatatgtttcattgtcctagcaactgaagtaacgtcatcaagc 99
Query: 477 tnnttaatatgtaatattgcgccttctcccggagnaaactcttgaatatttggagcacca 536
| ||||| ||||||||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 98 tccttaatgtgtaatattgcaccttctcctggagaaaactcttgaatatttggtgcacca 39
Query: 537 acaacaaccggaat 550
|| ||||| |||||
Sbjct: 38 acgacaactggaat 25
Score = 83.8 bits (42), Expect = 2e-016
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 21 agaccgactgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggc 80
||||| ||||| ||||||||||| | |||| ||||||||||||| ||||| | ||||
Sbjct: 554 agaccaactggataaattctgtacaccttcaactcatccccacctcgtatgcttgatggc 495
Query: 81 ctttcatccttccatacaggaacgtggttgagggacctaaat 122
|||||||||||||||| |||||| ||||||| ||| ||||||
Sbjct: 494 ctttcatccttccatataggaacatggttgatggatctaaat 453
>gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D09_H18, mRNA sequence
Length = 542
Score = 198 bits (100), Expect = 4e-051
Identities = 193/224 (86%)
Strand = Plus / Minus
Query: 177 taaatgctctctgacttaaaccgccctctctctcggataaataagtggtaaattgttccc 236
|||||||| |||| ||||| || ||||||||||| |||||||||||| | ||||||
Sbjct: 226 taaatgctttctgtcttaagcctccctctctctctagcaaataagtggtatactgttcct 167
Query: 237 tttttggtggaacagctacaaggacgatttgtaaattttggagtcctttcctcctttaaa 296
|||||| |||||||| |||| | ||||| ||||||||||||||||||| || ||| |
Sbjct: 166 tttttgctggaacagttacatgtgcgattcataaattttggagtcctttcttctttttca 107
Query: 297 tggatcttggtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtca 356
|| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 106 tgaatctttgtagcgatatgtatgcagagacgacaggatgaatgaaccgctgccatgtca 47
Query: 357 ataagagctttgaaagaatcggatggaccatcatacttccacct 400
||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 46 ataagtgccttgaaagaatcagatggaccatcatacttccacct 3
Score = 67.9 bits (34), Expect = 1e-011
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 77 tggcctttcatccttccatacaggaacgtggttgagggacctaaat 122
||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct: 326 tggcctttcatccttccatacaggaacatggttgatggatctaaat 281
>gb|CN818561.1|CN818561 HRO4466_H04_P08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H04_P08, mRNA sequence
Length = 699
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 260 acgatttgtaaattttg 276
|||||||||||||||||
Sbjct: 455 acgatttgtaaattttg 471
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1431
Number of Sequences: 8143
Number of extensions: 1431
Number of successful extensions: 377
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 5
length of query: 637
length of database: 4,702,463
effective HSP length: 16
effective length of query: 621
effective length of database: 4,572,175
effective search space: 2839320675
effective search space used: 2839320675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)