BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815939.1|CN815939 HRO4515_B06_D11ZS5 Lib AA071E1X Aven... 38 0.009
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 36 0.037
gb|CN820343.1|CN820343 HRO4418_C08_E16ZS5 Lib AA069E1X Aven... 34 0.14
>gb|CN815939.1|CN815939 HRO4515_B06_D11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B06_D11, mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 246 agaactatgctgttgtttc 264
|||||||||||||||||||
Sbjct: 685 agaactatgctgttgtttc 703
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 618 tacctgcccgggcggccg 635
||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccg 6
>gb|CN820343.1|CN820343 HRO4418_C08_E16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C08_E16, mRNA
sequence
Length = 696
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 511 aaaaaatgttgtatttt 527
|||||||||||||||||
Sbjct: 659 aaaaaatgttgtatttt 675
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1612
Number of Sequences: 8143
Number of extensions: 1612
Number of successful extensions: 455
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 3
length of query: 636
length of database: 4,702,463
effective HSP length: 16
effective length of query: 620
effective length of database: 4,572,175
effective search space: 2834748500
effective search space used: 2834748500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)