BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815935.1|CN815935 HRO4515_B02_D03ZS5 Lib AA071E1X Aven... 38 0.010
gb|CN817674.1|CN817674 HRO4461_H05_P09ZS5 Lib AA070E1X Aven... 34 0.16
gb|CN820333.1|CN820333 HRO4418_B10_C20ZS5 Lib AA069E1X Aven... 34 0.16
>gb|CN815935.1|CN815935 HRO4515_B02_D03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B02_D03, mRNA sequence
Length = 609
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 96 gcgccctcgcctccggtcc 114
|||||||||||||||||||
Sbjct: 91 gcgccctcgcctccggtcc 73
>gb|CN817674.1|CN817674 HRO4461_H05_P09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_H05_P09, mRNA sequence
Length = 466
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 48 catcgacggcgtcagcg 64
|||||||||||||||||
Sbjct: 163 catcgacggcgtcagcg 147
>gb|CN820333.1|CN820333 HRO4418_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B10_C20, mRNA
sequence
Length = 592
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 211 aacagaaacatcaacag 227
|||||||||||||||||
Sbjct: 99 aacagaaacatcaacag 83
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1551
Number of Sequences: 8143
Number of extensions: 1551
Number of successful extensions: 442
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 4
length of query: 714
length of database: 4,702,463
effective HSP length: 16
effective length of query: 698
effective length of database: 4,572,175
effective search space: 3191378150
effective search space used: 3191378150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)