BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820918.1|CN820918 HRO4421_D11_G21ZS5 Lib AA069E1X Aven... 34 0.13
gb|CN816677.1|CN816677 HRO4523_E06_J11ZS5 Lib AA071E1X Aven... 30 2.0
gb|CN818101.1|CN818101 HRO4471_H08_O15ZS5 Lib AA070E1X Aven... 30 2.0
gb|CN818552.1|CN818552 HRO4466_G10_N20ZS5 Lib AA070E1X Aven... 30 2.0
gb|CN815517.1|CN815517 HRO4512_E06_J12ZS5 Lib AA071E1X Aven... 28 7.8
gb|CN816685.1|CN816685 HRO4523_F02_L03ZS5 Lib AA071E1X Aven... 28 7.8
gb|CN817191.1|CN817191 HRO4458_E11_J22ZS5 Lib AA070E1X Aven... 28 7.8
gb|CN818064.1|CN818064 HRO4472_C04_E08ZS5 Lib AA070E1X Aven... 28 7.8
gb|CN818394.1|CN818394 HRO4457_C03_F05ZS5 Lib AA070E1X Aven... 28 7.8
gb|CN819169.1|CN819169 HRO4451_A01_A01ZS5 Lib AA070E1X Aven... 28 7.8
gb|CN819949.1|CN819949 HRO4409_A06_A11ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN819962.1|CN819962 HRO4409_C03_E05ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN820062.1|CN820062 HRO4410_F09_K18ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN820690.1|CN820690 HRO4416_D06_H12ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN820692.1|CN820692 HRO4416_D10_H20ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN821035.1|CN821035 HRO4422_G10_M20ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN821105.1|CN821105 HRO4427_E11_J21ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN821345.1|CN821345 HRO4424_C06_F12ZS5 Lib AA069E1X Aven... 28 7.8
gb|CN821358.1|CN821358 HRO4424_D07_H14ZS5 Lib AA069E1X Aven... 28 7.8
>gb|CN820918.1|CN820918 HRO4421_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_D11_G21, mRNA
sequence
Length = 819
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 tgctgaagacatgttgc 151
|||||||||||||||||
Sbjct: 216 tgctgaagacatgttgc 200
>gb|CN816677.1|CN816677 HRO4523_E06_J11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_E06_J11, mRNA sequence
Length = 776
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 544 aaagaacattggaag 558
|||||||||||||||
Sbjct: 419 aaagaacattggaag 433
>gb|CN818101.1|CN818101 HRO4471_H08_O15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H08_O15, mRNA sequence
Length = 660
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 aacagttcaacaaaa 111
|||||||||||||||
Sbjct: 115 aacagttcaacaaaa 101
>gb|CN818552.1|CN818552 HRO4466_G10_N20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_G10_N20, mRNA sequence
Length = 450
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 290 cagaggaagatgagg 304
|||||||||||||||
Sbjct: 63 cagaggaagatgagg 77
>gb|CN815517.1|CN815517 HRO4512_E06_J12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_E06_J12, mRNA sequence
Length = 623
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 538 gcactcaaagaaca 551
||||||||||||||
Sbjct: 431 gcactcaaagaaca 444
>gb|CN816685.1|CN816685 HRO4523_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_F02_L03, mRNA sequence
Length = 639
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 314 aaatggtaaaaaga 327
||||||||||||||
Sbjct: 48 aaatggtaaaaaga 61
>gb|CN817191.1|CN817191 HRO4458_E11_J22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_E11_J22, mRNA sequence
Length = 729
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 tcctcacaagaaaa 232
||||||||||||||
Sbjct: 407 tcctcacaagaaaa 420
>gb|CN818064.1|CN818064 HRO4472_C04_E08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C04_E08, mRNA sequence
Length = 711
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 agagggacctcctc 223
||||||||||||||
Sbjct: 509 agagggacctcctc 496
>gb|CN818394.1|CN818394 HRO4457_C03_F05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_C03_F05, mRNA sequence
Length = 684
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 291 agaggaagatgagg 304
||||||||||||||
Sbjct: 340 agaggaagatgagg 353
>gb|CN819169.1|CN819169 HRO4451_A01_A01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_A01_A01, mRNA sequence
Length = 649
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 gccaaggcgtggaa 198
||||||||||||||
Sbjct: 560 gccaaggcgtggaa 547
>gb|CN819949.1|CN819949 HRO4409_A06_A11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A06_A11, mRNA
sequence
Length = 547
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 314 aaatggtaaaaaga 327
||||||||||||||
Sbjct: 496 aaatggtaaaaaga 509
>gb|CN819962.1|CN819962 HRO4409_C03_E05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_C03_E05, mRNA
sequence
Length = 586
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tgctgaagacatgt 148
||||||||||||||
Sbjct: 501 tgctgaagacatgt 488
>gb|CN820062.1|CN820062 HRO4410_F09_K18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_F09_K18, mRNA
sequence
Length = 704
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 544 aaagaacattggaa 557
||||||||||||||
Sbjct: 178 aaagaacattggaa 165
>gb|CN820690.1|CN820690 HRO4416_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_D06_H12, mRNA
sequence
Length = 717
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 504 aatggtcaaacatt 517
||||||||||||||
Sbjct: 653 aatggtcaaacatt 640
>gb|CN820692.1|CN820692 HRO4416_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_D10_H20, mRNA
sequence
Length = 592
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 agtaatataccaca 167
||||||||||||||
Sbjct: 279 agtaatataccaca 266
>gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F03_L06, mRNA
sequence
Length = 577
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 tgtgccaaggcgtg 195
||||||||||||||
Sbjct: 347 tgtgccaaggcgtg 360
>gb|CN821035.1|CN821035 HRO4422_G10_M20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G10_M20, mRNA
sequence
Length = 435
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 ttcaacaaaacact 115
||||||||||||||
Sbjct: 368 ttcaacaaaacact 355
>gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H12_O24, mRNA
sequence
Length = 661
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 atcagaggaagatg 301
||||||||||||||
Sbjct: 34 atcagaggaagatg 21
>gb|CN821105.1|CN821105 HRO4427_E11_J21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_E11_J21, mRNA
sequence
Length = 796
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 291 agaggaagatgagg 304
||||||||||||||
Sbjct: 603 agaggaagatgagg 616
>gb|CN821345.1|CN821345 HRO4424_C06_F12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C06_F12, mRNA
sequence
Length = 745
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 504 aatggtcaaacatt 517
||||||||||||||
Sbjct: 646 aatggtcaaacatt 633
>gb|CN821358.1|CN821358 HRO4424_D07_H14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_D07_H14, mRNA
sequence
Length = 559
Score = 28.2 bits (14), Expect = 7.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 525 caggacaaatgatg 538
||||||||||||||
Sbjct: 472 caggacaaatgatg 485
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1481
Number of Sequences: 8143
Number of extensions: 1481
Number of successful extensions: 338
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 21
length of query: 559
length of database: 4,702,463
effective HSP length: 16
effective length of query: 543
effective length of database: 4,572,175
effective search space: 2482691025
effective search space used: 2482691025
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)