BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814774.1|CN814774 HRO4502_D02_G04ZS5 Lib AA071E1X Aven... 36 0.038
gb|CN817685.1|CN817685 HRO4461_G09_N17ZS5 Lib AA070E1X Aven... 36 0.038
gb|CN817698.1|CN817698 HRO4461_G03_N05ZS5 Lib AA070E1X Aven... 36 0.038
gb|CN821420.1|CN821420 HRO4425_B05_C09ZS5 Lib AA069E1X Aven... 36 0.038
gb|CN819030.1|CN819030 HRO4474_B08_D16ZS5 Lib AA070E1X Aven... 34 0.15
gb|CN819155.1|CN819155 HRO4468_F05_K10ZS5 Lib AA070E1X Aven... 34 0.15
>gb|CN814774.1|CN814774 HRO4502_D02_G04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_D02_G04, mRNA sequence
Length = 323
Score = 36.2 bits (18), Expect = 0.038
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctg 315
||||||||||||||||||
Sbjct: 94 tcgctgctgctgctgctg 77
>gb|CN817685.1|CN817685 HRO4461_G09_N17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_G09_N17, mRNA sequence
Length = 625
Score = 36.2 bits (18), Expect = 0.038
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctg 315
||||||||||||||||||
Sbjct: 376 tcgctgctgctgctgctg 359
>gb|CN817698.1|CN817698 HRO4461_G03_N05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_G03_N05, mRNA sequence
Length = 448
Score = 36.2 bits (18), Expect = 0.038
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctg 315
||||||||||||||||||
Sbjct: 236 tcgctgctgctgctgctg 219
>gb|CN821420.1|CN821420 HRO4425_B05_C09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_B05_C09, mRNA
sequence
Length = 461
Score = 36.2 bits (18), Expect = 0.038
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 298 tcgctgctgctgctgctg 315
||||||||||||||||||
Sbjct: 253 tcgctgctgctgctgctg 236
>gb|CN819030.1|CN819030 HRO4474_B08_D16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_B08_D16, mRNA sequence
Length = 582
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctga 316
|||||||||||||||||
Sbjct: 107 gctgctgctgctgctga 123
>gb|CN819155.1|CN819155 HRO4468_F05_K10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_F05_K10, mRNA sequence
Length = 479
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 299 cgctgctgctgctgctg 315
|||||||||||||||||
Sbjct: 121 cgctgctgctgctgctg 105
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1707
Number of Sequences: 8143
Number of extensions: 1707
Number of successful extensions: 608
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 13
length of query: 657
length of database: 4,702,463
effective HSP length: 16
effective length of query: 641
effective length of database: 4,572,175
effective search space: 2930764175
effective search space used: 2930764175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)