BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBF12h04.xg.3.2
(747 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815209.1|CN815209 HRO4507_B02_D03ZS5 Lib AA071E1X Aven... 54 2e-007
gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Aven... 36 0.043
gb|AA231922.1|AA231922 CDO520.F cDNA from oat Avena sativa ... 34 0.17
gb|BE439045.1|BE439045 CDO520_WHE2F0031F ITEC CDO Oat cDNA ... 34 0.17
gb|BE439089.1|BE439089 CDO520_WHE2F0032F ITEC CDO Oat cDNA ... 34 0.17
>gb|CN815209.1|CN815209 HRO4507_B02_D03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_B02_D03, mRNA sequence
Length = 492
Score = 54.0 bits (27), Expect = 2e-007
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 461 accgtgtccgcatcttcgtcgacatcgtcgcccagacgccccacatcggct 511
|||||||||| ||||||||||||| ||||||| ||| |||| ||||||||
Sbjct: 385 accgtgtccgtatcttcgtcgacaccgtcgccgagatcccccgcatcggct 335
Score = 40.1 bits (20), Expect = 0.003
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 367 gaggacgccaagaaggtgatcctcaaggacaagccggacg 406
||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 483 gaggaggccaagaagaccatcctcaaggacaggccggacg 444
>gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A11_A22, mRNA sequence
Length = 528
Score = 36.2 bits (18), Expect = 0.043
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 366 ggaggacgccaagaaggtgatc 387
|||||||| |||||||||||||
Sbjct: 265 ggaggacggcaagaaggtgatc 286
>gb|AA231922.1|AA231922 CDO520.F cDNA from oat Avena sativa cDNA clone CDO520, mRNA
sequence
Length = 216
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17 ccggagccgctgaggcc 33
|||||||||||||||||
Sbjct: 182 ccggagccgctgaggcc 166
>gb|BE439045.1|BE439045 CDO520_WHE2F0031F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO520_WHE2, mRNA sequence
Length = 238
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17 ccggagccgctgaggcc 33
|||||||||||||||||
Sbjct: 159 ccggagccgctgaggcc 143
>gb|BE439089.1|BE439089 CDO520_WHE2F0032F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO520_WHE2, mRNA sequence
Length = 485
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17 ccggagccgctgaggcc 33
|||||||||||||||||
Sbjct: 206 ccggagccgctgaggcc 190
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1549
Number of Sequences: 8143
Number of extensions: 1549
Number of successful extensions: 416
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 6
length of query: 747
length of database: 4,702,463
effective HSP length: 16
effective length of query: 731
effective length of database: 4,572,175
effective search space: 3342259925
effective search space used: 3342259925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)