BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817222.1|CN817222 HRO4464_D02_G04ZS5 Lib AA070E1X Aven... 38 0.024
gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Aven... 38 0.024
gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Aven... 38 0.024
gb|CN818732.1|CN818732 HRO4457_E10_J19ZS5 Lib AA070E1X Aven... 38 0.024
gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Aven... 38 0.024
gb|CN815272.1|CN815272 HRO4507_H01_P01ZS5 Lib AA071E1X Aven... 34 0.37
gb|CN818050.1|CN818050 HRO4472_C08_E16ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818401.1|CN818401 HRO4469_C11_F21ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818914.1|CN818914 HRO4455_H04_O07ZS5 Lib AA070E1X Aven... 34 0.37
>gb|CN817222.1|CN817222 HRO4464_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_D02_G04, mRNA sequence
Length = 356
Score = 38.2 bits (19), Expect = 0.024
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 827 agacccacaaggagaaggagctc 849
|||||||||||||| ||||||||
Sbjct: 77 agacccacaaggaggaggagctc 99
>gb|CN817582.1|CN817582 HRO4463_E08_I15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_E08_I15, mRNA sequence
Length = 424
Score = 38.2 bits (19), Expect = 0.024
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 827 agacccacaaggagaaggagctc 849
|||||||||||||| ||||||||
Sbjct: 152 agacccacaaggaggaggagctc 174
>gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C12_F23, mRNA sequence
Length = 469
Score = 38.2 bits (19), Expect = 0.024
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 827 agacccacaaggagaaggagctc 849
|||||||||||||| ||||||||
Sbjct: 272 agacccacaaggaggaggagctc 294
>gb|CN818732.1|CN818732 HRO4457_E10_J19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_E10_J19, mRNA sequence
Length = 343
Score = 38.2 bits (19), Expect = 0.024
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 827 agacccacaaggagaaggagctc 849
|||||||||||||| ||||||||
Sbjct: 64 agacccacaaggaggaggagctc 86
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
sequence
Length = 595
Score = 38.2 bits (19), Expect = 0.024
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 827 agacccacaaggagaaggagctc 849
|||||||||||||| ||||||||
Sbjct: 432 agacccacaaggaggaggagctc 454
>gb|CN815272.1|CN815272 HRO4507_H01_P01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_H01_P01, mRNA sequence
Length = 541
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 484 tgacaaacaaaacattc 500
|||||||||||||||||
Sbjct: 64 tgacaaacaaaacattc 48
>gb|CN818050.1|CN818050 HRO4472_C08_E16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C08_E16, mRNA sequence
Length = 792
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 834 caaggagaaggagctcg 850
|||||||||||||||||
Sbjct: 665 caaggagaaggagctcg 681
>gb|CN818401.1|CN818401 HRO4469_C11_F21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C11_F21, mRNA sequence
Length = 501
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 834 caaggagaaggagctcg 850
|||||||||||||||||
Sbjct: 76 caaggagaaggagctcg 92
>gb|CN818914.1|CN818914 HRO4455_H04_O07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_H04_O07, mRNA sequence
Length = 700
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 834 caaggagaaggagctcg 850
|||||||||||||||||
Sbjct: 290 caaggagaaggagctcg 306
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4362
Number of Sequences: 8143
Number of extensions: 4362
Number of successful extensions: 1210
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 14
length of query: 1626
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1609
effective length of database: 4,564,032
effective search space: 7343527488
effective search space used: 7343527488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)