BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Aven... 513 e-146
gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Aven... 176 2e-044
gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Aven... 48 1e-005
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.014
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
sequence
Length = 733
Score = 513 bits (259), Expect = e-146
Identities = 431/493 (87%)
Strand = Plus / Plus
Query: 88 tgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtttt 147
|||||||||||||| || ||||||||||||| | ||||||| ||||||
Sbjct: 76 tgggatgttgatctaaaaggaaaggtcaatggtgcagtggagacctgtggagagagtttc 135
Query: 148 caccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatcca 207
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 136 caccgttttgacaagtatcttaatttttcaaatcctcatattgctcggaactttgatcct 195
Query: 208 aatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaa 267
||||| ||||| ||||||||||||||||||||||||||||| | | |||||||||| |||
Sbjct: 196 aatgcttgtggttgggcttatgggatgaacatctttgatctaaagcagtggaagaacaaa 255
Query: 268 gatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttggaag 327
|||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 256 gatattaccgggatctaccacaagtggcaaaacatgaatgaagacagggttctttggaag 315
Query: 328 cttgggacacttccgcctggcctcttgaccttctataagttgacgcacccactggacaag 387
|| ||||||||||| ||||||||| |||| ||||| ||| |||| || || || || |||
Sbjct: 316 ctcgggacacttccacctggcctcatgacgttctacaagctgacacatccccttgataag 375
Query: 388 tcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagacaat 447
|| |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 376 tcgtggcatgtccttggattaggatacaacccaagcatagaccgctcggagatagacaat 435
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaag 507
|||||||| | ||||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 436 gctgctgttgctcattacaatgggaatatgaagccatggttggagctggcaatgaccaag 495
Query: 508 taccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgcaac 567
|| || ||||| ||||| | |||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 496 tatcggccatactggacaaggtatataaagtatgatcatccttatatccgcggatgcaac 555
Query: 568 ttgagtgagtaga 580
|||||||| ||||
Sbjct: 556 ttgagtgactaga 568
>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A06_B12, mRNA sequence
Length = 570
Score = 176 bits (89), Expect = 2e-044
Identities = 314/389 (80%)
Strand = Plus / Plus
Query: 154 tttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatccaaatgca 213
|||||||| || || ||||||||||| ||| | ||||| | |||||||||| | ||||||
Sbjct: 31 tttgacaagtacctcaatttttcaaacccaaatattgcccagaactttgatgctaatgca 90
Query: 214 tgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaagatatt 273
||||| ||||||||||| ||||| || ||||||||| || ||||||||||| || |||
Sbjct: 91 tgtggttgggcttatggaatgaatatgtttgatctggaagaatggaagaagaaggacatt 150
Query: 274 actgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttggaagcttggg 333
|||||||| ||||| | |||||| | ||||||| ||||| | || ||||| || |||
Sbjct: 151 actgggatttaccatagatggcagaccctgaatgagaacaggctgctgtggaaactgggg 210
Query: 334 acacttccgcctggcctcttgaccttctataagttgacgcacccactggacaagtcatgg 393
|||||||| || || || |||| ||||| ||| |||| ||||| |||||||| ||||||
Sbjct: 211 acacttccaccaggtcttatgactttctacaagctgacacacccgctggacaaatcatgg 270
Query: 394 catgttcttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgct 453
|| || |||||||||||||||||||||| | |||| | || || || |||| || |||
Sbjct: 271 cacgtgcttggattaggatacaacccaaccgttgagcactcggaaatcgacagcgccgct 330
Query: 454 gtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccga 513
|| | || ||||| || |||||||| |||||||||||| | || ||||| ||||||||
Sbjct: 331 gtcatccactacaacggaaacatgaaaccatggctggagatcgcgatgacaaagtaccgg 390
Query: 514 ccatattggaccaagtatatcaagtatga 542
|| || ||||| ||||| ||||| |||||
Sbjct: 391 ccttactggacaaagtacatcaattatga 419
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D01_H01, mRNA sequence
Length = 653
Score = 48.1 bits (24), Expect = 1e-005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctgga 491
|||||||| || |||| |||||| ||||||||||| ||||||||
Sbjct: 484 gctgctgttgtgcatttcaatggtaacatgaagccttggctgga 527
Score = 36.2 bits (18), Expect = 0.056
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 379 ctggacaagtcatggcatgttcttgg 404
|||||||| || ||||||||||||||
Sbjct: 415 ctggacaaatcctggcatgttcttgg 440
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 951 tacctgcccgggcggccgc 969
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2157
Number of Sequences: 8143
Number of extensions: 2157
Number of successful extensions: 582
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 9
length of query: 969
length of database: 4,702,463
effective HSP length: 16
effective length of query: 953
effective length of database: 4,572,175
effective search space: 4357282775
effective search space used: 4357282775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)