BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAT2e04.yg.2.1
         (424 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816112.1|CN816112  HRO4517_B04_C07ZS5 Lib AA071E1X Aven...    34   0.095
gb|AF234528.1|AF234528  Avena nuda actin 1 gene, complete cds      34   0.095
dbj|AB076980.1|  Avena sativa AsHHT1 mRNA for hydroxyanthran...    32   0.38 
dbj|AB076981.1|  Avena sativa AsHHT2 mRNA for hydroxyanthran...    32   0.38 
dbj|AB076982.1|  Avena sativa AsHHT3 mRNA for hydroxyanthran...    32   0.38 

>gb|CN816112.1|CN816112 HRO4517_B04_C07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_B04_C07, mRNA sequence
          Length = 521

 Score = 34.2 bits (17), Expect = 0.095
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 380 catcatgaagtgcgacg 396
           |||||||||||||||||
Sbjct: 67  catcatgaagtgcgacg 83



>gb|AF234528.1|AF234528 Avena nuda actin 1 gene, complete cds
          Length = 1796

 Score = 34.2 bits (17), Expect = 0.095
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 380  catcatgaagtgcgacg 396
            |||||||||||||||||
Sbjct: 1411 catcatgaagtgcgacg 1427



>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
           hydroxycinnamoyltransferase 1, complete cds
          Length = 1755

 Score = 32.2 bits (16), Expect = 0.38
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 295 tgccgttcatcgaccg 310
           ||||||||||||||||
Sbjct: 684 tgccgttcatcgaccg 699



>dbj|AB076981.1| Avena sativa AsHHT2 mRNA for hydroxyanthranilate
           hydroxycinnamoyltransferase 2, complete cds
          Length = 1770

 Score = 32.2 bits (16), Expect = 0.38
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 295 tgccgttcatcgaccg 310
           ||||||||||||||||
Sbjct: 704 tgccgttcatcgaccg 719



>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
           hydroxycinnamoyltransferase 3, complete cds
          Length = 1659

 Score = 32.2 bits (16), Expect = 0.38
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 295 tgccgttcatcgaccg 310
           ||||||||||||||||
Sbjct: 557 tgccgttcatcgaccg 572



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 917
Number of Sequences: 8143
Number of extensions: 917
Number of successful extensions: 239
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 5
length of query: 424
length of database: 4,702,463
effective HSP length: 16
effective length of query: 408
effective length of database: 4,572,175
effective search space: 1865447400
effective search space used: 1865447400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)