BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820249.1|CN820249 HRO4417_C01_E01ZS5 Lib AA069E1X Aven... 72 2e-012
gb|CN814835.1|CN814835 HRO4503_A04_B07ZS5 Lib AA071E1X Aven... 34 0.46
gb|CN819602.1|CN819602 HRO4402_A08_A16ZS5 Lib AA069E1X Aven... 34 0.46
gb|CN819741.1|CN819741 HRO4403_E12_J23ZS5 Lib AA069E1X Aven... 34 0.46
gb|CN820035.1|CN820035 HRO4410_D05_G10ZS5 Lib AA069E1X Aven... 34 0.46
gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Aven... 32 1.8
gb|CN817362.1|CN817362 HRO4454_E02_J04ZS5 Lib AA070E1X Aven... 32 1.8
gb|CN821390.1|CN821390 HRO4424_G06_N12ZS5 Lib AA069E1X Aven... 32 1.8
gb|AA231932.1|AA231932 CDO118.F cDNA from oat Avena sativa ... 30 7.2
gb|BE439217.1|BE439217 CDO689_WHE03B06R ITEC CDO Oat cDNA L... 30 7.2
gb|BE439260.1|BE439260 CDO312_WHE04F03F ITEC CDO Oat cDNA L... 30 7.2
gb|CN815092.1|CN815092 HRO4505_G07_M13ZS5 Lib AA071E1X Aven... 30 7.2
gb|CN815563.1|CN815563 HRO4513_A10_A19ZS5 Lib AA071E1X Aven... 30 7.2
gb|CN815831.1|CN815831 HRO4510_H12_O24ZS5 Lib AA071E1X Aven... 30 7.2
gb|CN816001.1|CN816001 HRO4515_G09_N17ZS5 Lib AA071E1X Aven... 30 7.2
gb|CN816342.1|CN816342 HRO4519_F06_L11ZS5 Lib AA071E1X Aven... 30 7.2
gb|CN817223.1|CN817223 HRO4454_C02_F04ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN817373.1|CN817373 HRO4465_D10_H19ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN817419.1|CN817419 HRO4454_E12_J24ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN817730.1|CN817730 HRO4453_G04_N07ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN818113.1|CN818113 HRO4471_F09_K17ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN818244.1|CN818244 HRO4470_E06_J12ZS5 Lib AA070E1X Aven... 30 7.2
gb|CN819487.1|CN819487 HRO4406_F07_K14ZS5 Lib AA069E1X Aven... 30 7.2
gb|CN820344.1|CN820344 HRO4418_C09_E18ZS5 Lib AA069E1X Aven... 30 7.2
gb|CN820721.1|CN820721 HRO4416_H01_P02ZS5 Lib AA069E1X Aven... 30 7.2
gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks o... 30 7.2
gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox... 30 7.2
dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag... 30 7.2
dbj|AB061328.1| Avena sativa LTR-retrotransposon OARE-1 gag... 30 7.2
>gb|CN820249.1|CN820249 HRO4417_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C01_E01, mRNA
sequence
Length = 422
Score = 71.9 bits (36), Expect = 2e-012
Identities = 91/107 (85%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 1478 agcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttgagaatatcta 1537
|||| ||||| |||||||||| |||||||||||||||| | ||||||||| |||||||
Sbjct: 4 agcatcagacttgtatgacaaagacttgcaaagaatgcccttgtcttttgagcatatcta 63
Query: 1538 ggcattatgttccacca--catggaac-agagcagatcagaagaagc 1581
|| | |||||||| ||| |||||||| |||| ||||||| ||||||
Sbjct: 64 ggtactatgttccgccattcatggaacaagagtagatcagcagaagc 110
Score = 58.0 bits (29), Expect = 3e-008
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1741 atgcataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttcc 1800
||||| || |||||| |||| |||||||| || ||||||| ||||||||| |||||||
Sbjct: 275 atgcacagaaaagtacattctggagtctccctttctttctcgtgaaaattgttgttttc- 333
Query: 1801 ttctgtacacgac 1813
|||||||||||||
Sbjct: 334 ttctgtacacgac 346
Score = 36.2 bits (18), Expect = 0.12
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1647 gttgatacagaaatcatcctcc 1668
|||||||||||||||| |||||
Sbjct: 181 gttgatacagaaatcaacctcc 202
>gb|CN814835.1|CN814835 HRO4503_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A04_B07, mRNA sequence
Length = 624
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1276 acattggacaagaaaaa 1292
|||||||||||||||||
Sbjct: 311 acattggacaagaaaaa 327
>gb|CN819602.1|CN819602 HRO4402_A08_A16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_A08_A16, mRNA
sequence
Length = 622
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5 cctttccttgctttcca 21
|||||||||||||||||
Sbjct: 302 cctttccttgctttcca 286
>gb|CN819741.1|CN819741 HRO4403_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E12_J23, mRNA
sequence
Length = 655
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5 cctttccttgctttcca 21
|||||||||||||||||
Sbjct: 69 cctttccttgctttcca 53
>gb|CN820035.1|CN820035 HRO4410_D05_G10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_D05_G10, mRNA
sequence
Length = 662
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1455 cagccacagcaacagct 1471
|||||||||||||||||
Sbjct: 270 cagccacagcaacagct 286
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G05_M09, mRNA sequence
Length = 662
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1285 aagaaaaagatacaag 1300
||||||||||||||||
Sbjct: 622 aagaaaaagatacaag 607
>gb|CN817362.1|CN817362 HRO4454_E02_J04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_E02_J04, mRNA sequence
Length = 490
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1836 tttgttctctctggtg 1851
||||||||||||||||
Sbjct: 107 tttgttctctctggtg 122
>gb|CN821390.1|CN821390 HRO4424_G06_N12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G06_N12, mRNA
sequence
Length = 848
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1691 gctggcaatatcaaggaaag 1710
|||| |||||||||||||||
Sbjct: 275 gctgccaatatcaaggaaag 294
>gb|AA231932.1|AA231932 CDO118.F cDNA from oat Avena sativa cDNA clone CDO118, mRNA sequence
Length = 214
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcag 1189
|||||||||||||||
Sbjct: 83 tagcagcagtagcag 97
>gb|BE439217.1|BE439217 CDO689_WHE03B06R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO689_WHE03B06, mRNA sequence
Length = 230
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1571 tcagaagaagcagaa 1585
|||||||||||||||
Sbjct: 60 tcagaagaagcagaa 74
>gb|BE439260.1|BE439260 CDO312_WHE04F03F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO312_WHE04, mRNA sequence
Length = 390
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1572 cagaagaagcagaaa 1586
|||||||||||||||
Sbjct: 290 cagaagaagcagaaa 304
>gb|CN815092.1|CN815092 HRO4505_G07_M13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_G07_M13, mRNA sequence
Length = 381
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 595 agaagaagctgaggcagaa 613
|||||||||||||| ||||
Sbjct: 167 agaagaagctgaggaagaa 185
>gb|CN815563.1|CN815563 HRO4513_A10_A19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_A10_A19, mRNA sequence
Length = 666
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 994 cactctggttcaacc 1008
|||||||||||||||
Sbjct: 582 cactctggttcaacc 568
>gb|CN815831.1|CN815831 HRO4510_H12_O24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H12_O24, mRNA sequence
Length = 799
Score = 30.2 bits (15), Expect = 7.2
Identities = 24/27 (88%)
Strand = Plus / Minus
Query: 526 ctcaaattgcagcgcagctgccaggga 552
||||||||||| ||||||| ||||||
Sbjct: 427 ctcaaattgcaaagcagctggcaggga 401
>gb|CN816001.1|CN816001 HRO4515_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G09_N17, mRNA sequence
Length = 782
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1792 atgttttccttctgtacac 1810
||||| |||||||||||||
Sbjct: 268 atgttatccttctgtacac 250
>gb|CN816342.1|CN816342 HRO4519_F06_L11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F06_L11, mRNA sequence
Length = 692
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1780 tcttgaaaattgatg 1794
|||||||||||||||
Sbjct: 419 tcttgaaaattgatg 433
>gb|CN817223.1|CN817223 HRO4454_C02_F04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_C02_F04, mRNA sequence
Length = 482
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1765 gtctcctttcctttctctt 1783
||||||| |||||||||||
Sbjct: 127 gtctcctgtcctttctctt 109
>gb|CN817373.1|CN817373 HRO4465_D10_H19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D10_H19, mRNA sequence
Length = 412
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1929 ttcaactgctgccat 1943
|||||||||||||||
Sbjct: 137 ttcaactgctgccat 123
>gb|CN817419.1|CN817419 HRO4454_E12_J24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_E12_J24, mRNA sequence
Length = 461
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1929 ttcaactgctgccat 1943
|||||||||||||||
Sbjct: 302 ttcaactgctgccat 288
>gb|CN817730.1|CN817730 HRO4453_G04_N07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G04_N07, mRNA sequence
Length = 751
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1834 tttttgttctctctg 1848
|||||||||||||||
Sbjct: 225 tttttgttctctctg 239
>gb|CN818113.1|CN818113 HRO4471_F09_K17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_F09_K17, mRNA sequence
Length = 775
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1439 ttggttccagaatca 1453
|||||||||||||||
Sbjct: 406 ttggttccagaatca 420
>gb|CN818244.1|CN818244 HRO4470_E06_J12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_E06_J12, mRNA sequence
Length = 742
Score = 30.2 bits (15), Expect = 7.2
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Minus
Query: 1733 gcagcaggatgcataggaaagta 1755
||||||||||||| |||||||||
Sbjct: 180 gcagcaggatgca-aggaaagta 159
>gb|CN819487.1|CN819487 HRO4406_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_F07_K14, mRNA
sequence
Length = 752
Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 593 caagaagaagctgaggcag 611
||||| |||||||||||||
Sbjct: 493 caagaggaagctgaggcag 511
>gb|CN820344.1|CN820344 HRO4418_C09_E18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C09_E18, mRNA
sequence
Length = 384
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1616 ttatgctgaattgct 1630
|||||||||||||||
Sbjct: 192 ttatgctgaattgct 206
>gb|CN820721.1|CN820721 HRO4416_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H01_P02, mRNA
sequence
Length = 606
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1938 tgccatgcatgtcca 1952
|||||||||||||||
Sbjct: 339 tgccatgcatgtcca 325
>gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks old, post-germination Avena
sativa cDNA clone ASCID1-1_037_g11, mRNA sequence
Length = 748
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 359 tggctgctggagctc 373
|||||||||||||||
Sbjct: 34 tggctgctggagctc 20
>gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox protein gene, partial cds
Length = 285
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 664 gtgcagctcccacca 678
|||||||||||||||
Sbjct: 57 gtgcagctcccacca 43
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
polyprotein
Length = 8665
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1788 attgatgttttcctt 1802
|||||||||||||||
Sbjct: 3789 attgatgttttcctt 3803
>dbj|AB061328.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene mRNA for
polyprotein
Length = 3528
Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1788 attgatgttttcctt 1802
|||||||||||||||
Sbjct: 998 attgatgttttcctt 1012
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5451
Number of Sequences: 8143
Number of extensions: 5451
Number of successful extensions: 1501
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 42
length of query: 1992
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1975
effective length of database: 4,564,032
effective search space: 9013963200
effective search space used: 9013963200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)