BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN11a10.yg.3.1
(1341 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818669.1|CN818669 HRO4467_F09_K17ZS5 Lib AA070E1X Aven... 428 e-120
gb|CN817711.1|CN817711 HRO4461_F03_L05ZS5 Lib AA070E1X Aven... 121 2e-027
gb|CN814816.1|CN814816 HRO4502_G09_M18ZS5 Lib AA071E1X Aven... 38 0.020
gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Aven... 38 0.020
gb|CN819938.1|CN819938 HRO4406_F05_K10ZS5 Lib AA069E1X Aven... 38 0.020
gb|CN816954.1|CN816954 HRO4526_F08_K16ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN819266.1|CN819266 HRO4452_A04_A08ZS5 Lib AA070E1X Aven... 34 0.31
>gb|CN818669.1|CN818669 HRO4467_F09_K17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_F09_K17, mRNA sequence
Length = 885
Score = 428 bits (216), Expect = e-120
Identities = 546/656 (83%)
Strand = Plus / Plus
Query: 377 gtcatggagaggtatacgaagatgagcaacgctatgaagacgtatgggaagggcatcttc 436
|||||||| || || || ||||||||||| || ||||||| ||||||||| |||||||
Sbjct: 33 gtcatggatagatacactaagatgagcaaagccatgaagaaatatgggaagaacatcttc 92
Query: 437 ttctcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggcggcatggggaac 496
||||| || || |||||||| | | ||||||||||| |||||| | |||||||| ||
Sbjct: 93 ttctcactctgtgaatggggaaacgagaaccctgctacatgggcacgtggcatgggtaat 152
Query: 497 agctggagaacgaccgatgatatcgccgacaactggggcagcatgacgtctcgtgcagac 556
|||||||| || || | || || ||||||||||||||||||||||| || || || |||
Sbjct: 153 agctggaggacaactggcgacattgccgacaactggggcagcatgacatcccgcgcggac 212
Query: 557 cagaacgacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatgctt 616
||||||||||| ||||| |||||||| |||||||| || |||||||||||||||||||||
Sbjct: 213 cagaacgacagatgggcctcctacgcgggacctggtggatggaacgatcctgacatgctt 272
Query: 617 gaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcg 676
|| || || || || || ||| | || || ||||||||||| |||||||||||||||||
Sbjct: 273 gaagttgggaatggtgggatgactgaagctgagtaccgctcgcacttcagcatctgggca 332
Query: 677 ctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatg 736
|| ||||||||||| ||||||||||||||||| |||||| |||||||||||||||| | |
Sbjct: 333 cttgccaaggctcctcttctgatcgggtgcgatgtgcgctcgatgagccagcagacaaag 392
Query: 737 ggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcaggga 796
| ||| ||||||||| ||| ||||||| ||| ||||||||| |||||||||| ||||||
Sbjct: 393 gaaataatcagcaactgggaggtcatcggcgtcaaccaagatggcctaggcgtccaggga 452
Query: 797 aagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacagg 856
||||| |||||||| | ||||| |||||||| ||||| || || |||| ||||||
Sbjct: 453 aagaaggtgcagtctaataatggtttggaggtatgggccggtcctctcactgggaacagg 512
Query: 857 aaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcg 916
|| || |||||||| |||||| ||||||| ||||||||||||||||| || | |||||
Sbjct: 513 aaagctgtggttctatggaacaggcaggggtaccaggcaaccatcactgcatattggtca 572
Query: 917 agcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtca 976
||| | ||||| ||| | || |||| ||||||| ||| |||||||||||||||||||||
Sbjct: 573 agcgttgggcttcctgcatcagctgccgtcactgttcgcgatctatgggcgcactcgtca 632
Query: 977 ttctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgta 1032
| || ||||| || ||| |||| || |||||| ||||||| ||||||||||||||
Sbjct: 633 tcttccgctcaggggcagatatccgcctcggtggcacctcatgactgcaagatgta 688
>gb|CN817711.1|CN817711 HRO4461_F03_L05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_F03_L05, mRNA sequence
Length = 528
Score = 121 bits (61), Expect = 2e-027
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 852 acaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagt 911
||||||| || |||||||| |||||| ||||||| ||||||||||||||||| || | |
Sbjct: 54 acaggaaagctgtggttctatggaacaggcaggggtaccaggcaaccatcactgcatatt 113
Query: 912 ggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcact 971
|||| ||| | ||||| ||| | || |||| ||||||| ||| ||||||||||||||||
Sbjct: 114 ggtcaagcgttgggcttcctgcatcagctgccgtcactgttcgcgatctatgggcgcact 173
Query: 972 cgtcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgt 1031
|||||| || ||||| || ||| |||| || |||||| ||||||| |||||||||||||
Sbjct: 174 cgtcatcttccgctcaggggcagatatccgcctcggtggcacctcatgactgcaagatgt 233
Query: 1032 a 1032
|
Sbjct: 234 a 234
>gb|CN814816.1|CN814816 HRO4502_G09_M18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_G09_M18, mRNA sequence
Length = 741
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 850 caacaggaaggccgtggtt 868
|||||||||||||||||||
Sbjct: 102 caacaggaaggccgtggtt 120
>gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_H03_P06, mRNA sequence
Length = 713
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 850 caacaggaaggccgtggtt 868
|||||||||||||||||||
Sbjct: 107 caacaggaaggccgtggtt 125
>gb|CN819938.1|CN819938 HRO4406_F05_K10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_F05_K10, mRNA
sequence
Length = 807
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 850 caacaggaaggccgtggtt 868
|||||||||||||||||||
Sbjct: 160 caacaggaaggccgtggtt 178
>gb|CN816954.1|CN816954 HRO4526_F08_K16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_F08_K16, mRNA sequence
Length = 853
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 851 aacaggaaggccgtggt 867
|||||||||||||||||
Sbjct: 776 aacaggaaggccgtggt 792
>gb|CN819266.1|CN819266 HRO4452_A04_A08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_A04_A08, mRNA sequence
Length = 654
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 852 acaggaaggccgtggtt 868
|||||||||||||||||
Sbjct: 17 acaggaaggccgtggtt 33
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2766
Number of Sequences: 8143
Number of extensions: 2766
Number of successful extensions: 748
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 8
length of query: 1341
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1325
effective length of database: 4,572,175
effective search space: 6058131875
effective search space used: 6058131875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)